README.md

metadata

title: Bioinformatics with BB Tutor
emoji: 🧬
colorFrom: blue
colorTo: green
sdk: gradio
sdk_version: 5.29.0
app_file: app.py
pinned: true
license: mit
short_description: AI-powered bioinformatics teaching assistant

🧬 Bioinformatics with BB Tutor

An AI-powered bioinformatics teaching assistant with 7 specialized modules covering RNA-seq, exome sequencing, genome sequencing, microbiome analysis, variant interpretation, molecular genetics, and advanced NGS methods.

Modules

Module	Description
🧬 Ask the Tutor	Ask any bioinformatics question with RAG-augmented answers
📄 Upload & Explain	Upload PDFs, VCFs, FASTA files for AI-powered analysis
❓ Quiz Me	Auto-generated quizzes (MCQ, True/False, Short Answer)
📚 Build a Lesson	Generate structured lessons with exercises
🔬 Workflow Coach	Step-by-step pipeline guidance
📰 Paper to Lesson	Convert research papers into teaching material
🎓 Viva Practice	Oral examination practice with AI examiner

Setup

Add your HF_TOKEN as a Space secret to enable LLM-powered responses.

Domains Covered

RNA-seq · Exome Sequencing · Genome Sequencing · Microbiome Analysis · Variant Interpretation · Molecular Genetics · Single-cell RNA-seq · ATAC-seq · ChIP-seq · Methylation Sequencing · Small RNA-seq · Targeted Panels · Long-read Sequencing · Spatial Transcriptomics · Multi-omics Integration