README.md

---
title: Bioinformatics with BB Tutor
emoji: 🧬
colorFrom: blue
colorTo: green
sdk: gradio
sdk_version: 5.29.0
app_file: app.py
pinned: true
license: mit
short_description: AI-powered bioinformatics teaching assistant
---

# 🧬 Bioinformatics with BB Tutor

An AI-powered bioinformatics teaching assistant with 7 specialized modules covering RNA-seq, exome sequencing, genome sequencing, microbiome analysis, variant interpretation, molecular genetics, and advanced NGS methods.

## Modules

| Module | Description |
|--------|-------------|
| 🧬 **Ask the Tutor** | Ask any bioinformatics question with RAG-augmented answers |
| 📄 **Upload & Explain** | Upload PDFs, VCFs, FASTA files for AI-powered analysis |
| ❓ **Quiz Me** | Auto-generated quizzes (MCQ, True/False, Short Answer) |
| 📚 **Build a Lesson** | Generate structured lessons with exercises |
| 🔬 **Workflow Coach** | Step-by-step pipeline guidance |
| 📰 **Paper to Lesson** | Convert research papers into teaching material |
| 🎓 **Viva Practice** | Oral examination practice with AI examiner |

## Setup

Add your `HF_TOKEN` as a Space secret to enable LLM-powered responses.

## Domains Covered

RNA-seq · Exome Sequencing · Genome Sequencing · Microbiome Analysis · Variant Interpretation · Molecular Genetics · Single-cell RNA-seq · ATAC-seq · ChIP-seq · Methylation Sequencing · Small RNA-seq · Targeted Panels · Long-read Sequencing · Spatial Transcriptomics · Multi-omics Integration