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README.md
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title: Bioinformatics
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sdk: gradio
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app_file: app.py
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title: Bioinformatics with BB Tutor
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emoji: 🧬
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sdk: gradio
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sdk_version: 5.29.0
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app_file: app.py
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license: mit
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short_description: AI-powered bioinformatics teaching assistant
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# 🧬 Bioinformatics with BB Tutor
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An AI-powered bioinformatics teaching assistant with 7 specialized modules covering RNA-seq, exome sequencing, genome sequencing, microbiome analysis, variant interpretation, molecular genetics, and advanced NGS methods.
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## Modules
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| Module | Description |
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|--------|-------------|
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| 🧬 **Ask the Tutor** | Ask any bioinformatics question with RAG-augmented answers |
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| 📄 **Upload & Explain** | Upload PDFs, VCFs, FASTA files for AI-powered analysis |
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| ❓ **Quiz Me** | Auto-generated quizzes (MCQ, True/False, Short Answer) |
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| 📚 **Build a Lesson** | Generate structured lessons with exercises |
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| 🔬 **Workflow Coach** | Step-by-step pipeline guidance |
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| 📰 **Paper to Lesson** | Convert research papers into teaching material |
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| 🎓 **Viva Practice** | Oral examination practice with AI examiner |
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## Setup
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Add your `HF_TOKEN` as a Space secret to enable LLM-powered responses.
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## Domains Covered
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RNA-seq · Exome Sequencing · Genome Sequencing · Microbiome Analysis · Variant Interpretation · Molecular Genetics · Single-cell RNA-seq · ATAC-seq · ChIP-seq · Methylation Sequencing · Small RNA-seq · Targeted Panels · Long-read Sequencing · Spatial Transcriptomics · Multi-omics Integration
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