serial_number int64 1 315 | task_id stringlengths 21 21 | task stringlengths 421 509 | image_sequence stringlengths 408 924 | json_data stringlengths 3.77k 7.08k | num_steps int64 11 24 | num_images int64 11 24 | image_paths stringlengths 839 1.86k | images_dir stringclasses 1
value |
|---|---|---|---|---|---|---|---|---|
201 | 3dslicer_endtoend_201 | Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, apply Gaussian smoothing to denoise the volume, invert grayscale to highlight low-intensity structures, threshold ventricles in the segmentation editor, threshold ventricles in the segmentation editor, create a rectangular ROI t... | Import_Rishu_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_42_ScreenCapture_Module.png → BMRI_24_Model_... | {
"id": "3dslicer_endtoend_201",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
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"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, apply Gaussian ... | 17 | 17 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects... | /home/rishu/Projects/3D slicer/MRI Brain |
202 | 3dslicer_endtoend_202 | Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram equalization for better contrast, normalize intensity levels across slices, use the Paint tool to refine segmentation boundaries, convert segmentation to 3D model for visualization, place two fiducial points (AC an... | Import_Rishu_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_26_Select... | {
"id": "3dslicer_endtoend_202",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram e... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI... | /home/rishu/Projects/3D slicer/MRI Brain |
203 | 3dslicer_endtoend_203 | Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, invert grayscale to highlight low-intensity structures, apply Gaussian smoothing to denoise the volume, use the Paint tool to refine segmentation boundaries, create a new segmentation for white and gray matter regions, place two... | Import_Rishu_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_26_Select_F... | {
"id": "3dslicer_endtoend_203",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
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"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, invert grayscal... | 17 | 17 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects... | /home/rishu/Projects/3D slicer/MRI Brain |
204 | 3dslicer_endtoend_204 | Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, normalize intensity levels across slices, run bias correction to remove shading artifacts, create a new segmentation for white and gray matter regions, create a new segmentation for white and gray matter regions, place two fiducia... | Import_Rishu_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_26_Select_Fiducial... | {
"id": "3dslicer_endtoend_204",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, normalize intensi... | 16 | 16 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MR... | /home/rishu/Projects/3D slicer/MRI Brain |
205 | 3dslicer_endtoend_205 | Open MRI project for Rishu, set layout to 1×2, and ensure axial and sagittal slices are visible, apply histogram equalization for better contrast, run bias correction to remove shading artifacts, convert segmentation to 3D model for visualization, use the Paint tool to refine segmentation boundaries, add annotation lab... | Import_Rishu_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_23_Segmentation_To_Model_Conversion.png → BM... | {
"id": "3dslicer_endtoend_205",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Open MRI project for Rishu, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, apply... | 17 | 17 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/M... | /home/rishu/Projects/3D slicer/MRI Brain |
206 | 3dslicer_endtoend_206 | Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, invert grayscale to highlight low-intensity structures, run bias correction to remove shading artifacts, use the Paint tool to refine segmentation boundaries, apply smoothing to the segmentation mask, draw a circular ROI over the ... | Import_Rishu_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_... | {
"id": "3dslicer_endtoend_206",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, invert grayscale ... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MR... | /home/rishu/Projects/3D slicer/MRI Brain |
207 | 3dslicer_endtoend_207 | Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, apply Gaussian smoothing to denoise the volume, invert grayscale to highlight low-intensity structures, use the Paint tool to refine segmentation boundaries, convert segmentation to 3D model for visualization, create a rectangular... | Import_Rishu_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Mo... | {
"id": "3dslicer_endtoend_207",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, apply Gaussian sm... | 19 | 19 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MR... | /home/rishu/Projects/3D slicer/MRI Brain |
208 | 3dslicer_endtoend_208 | Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, apply histogram equalization for better contrast, run bias correction to remove shading artifacts, create a new segmentation for white and gray matter regions, create a new segmentation for white and gray matter regions, compute... | Import_Rishu_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_20_Select_Apply.png → BMRI_20_ROI_Statistics_Table.p... | {
"id": "3dslicer_endtoend_208",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, apply histogram... | 14 | 14 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Pr... | /home/rishu/Projects/3D slicer/MRI Brain |
209 | 3dslicer_endtoend_209 | Open MRI project for Rishu, set layout to 1×2, and ensure axial and sagittal slices are visible, apply Gaussian smoothing to denoise the volume, apply Gaussian smoothing to denoise the volume, create a new segmentation for white and gray matter regions, apply smoothing to the segmentation mask, draw a circular ROI over... | Import_Rishu_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_Cir... | {
"id": "3dslicer_endtoend_209",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Open MRI project for Rishu, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, apply... | 16 | 16 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/M... | /home/rishu/Projects/3D slicer/MRI Brain |
210 | 3dslicer_endtoend_210 | Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, run bias correction to remove shading artifacts, invert grayscale to highlight low-intensity structures, create a new segmentation for white and gray matter regions, convert segmentation to 3D model for visualization, add annotati... | Import_Rishu_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segme... | {
"id": "3dslicer_endtoend_210",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, run bias correcti... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MR... | /home/rishu/Projects/3D slicer/MRI Brain |
211 | 3dslicer_endtoend_211 | Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, normalize intensity levels across slices, apply Gaussian smoothing to denoise the volume, convert segmentation to 3D model for visualization, apply smoothing to the segmentation mask, create a rectangular ROI to isolate temporal... | Import_Shaurya_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_37_Layou... | {
"id": "3dslicer_endtoend_211",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, normalize int... | 17 | 17 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/... | /home/rishu/Projects/3D slicer/MRI Brain |
212 | 3dslicer_endtoend_212 | Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, apply histogram equalization for better contrast, normalize intensity levels across slices, apply smoothing to the segmentation mask, threshold ventricles in the segmentation editor, draw a circular ROI over the left ventricle... | Import_Shaurya_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI... | {
"id": "3dslicer_endtoend_212",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, apply histo... | 16 | 16 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D sl... | /home/rishu/Projects/3D slicer/MRI Brain |
213 | 3dslicer_endtoend_213 | Open MRI project for Shaurya, set layout to 1×2, and ensure axial and sagittal slices are visible, run bias correction to remove shading artifacts, run bias correction to remove shading artifacts, convert segmentation to 3D model for visualization, use the Paint tool to refine segmentation boundaries, draw a circular R... | Import_Shaurya_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png... | {
"id": "3dslicer_endtoend_213",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Open MRI project for Shaurya, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, r... | 16 | 16 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer... | /home/rishu/Projects/3D slicer/MRI Brain |
214 | 3dslicer_endtoend_214 | Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, apply Gaussian smoothing to denoise the volume, run bias correction to remove shading artifacts, use the Paint tool to refine segmentation boundaries, convert segmentation to 3D model for visualization, draw a circular ROI ove... | Import_Shaurya_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisi... | {
"id": "3dslicer_endtoend_214",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, apply Gauss... | 17 | 17 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/... | /home/rishu/Projects/3D slicer/MRI Brain |
215 | 3dslicer_endtoend_215 | Open MRI project for Shaurya, set layout to 1×2, and ensure axial and sagittal slices are visible, run bias correction to remove shading artifacts, apply histogram equalization for better contrast, use the Paint tool to refine segmentation boundaries, use the Paint tool to refine segmentation boundaries, place two fidu... | Import_Shaurya_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_26_Select_Fiducial.png → BMRI_26_Fiducials... | {
"id": "3dslicer_endtoend_215",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Open MRI project for Shaurya, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, r... | 15 | 15 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer... | /home/rishu/Projects/3D slicer/MRI Brain |
216 | 3dslicer_endtoend_216 | Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, run bias correction to remove shading artifacts, apply Gaussian smoothing to denoise the volume, apply smoothing to the segmentation mask, create a new segmentation for white and gray matter regions, add annotation label to high... | Import_Shaurya_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation... | {
"id": "3dslicer_endtoend_216",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, run bias corr... | 16 | 16 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/... | /home/rishu/Projects/3D slicer/MRI Brain |
217 | 3dslicer_endtoend_217 | Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, apply Gaussian smoothing to denoise the volume, apply Gaussian smoothing to denoise the volume, threshold ventricles in the segmentation editor, apply smoothing to the segmentation mask, place two fiducial points (AC and PC) a... | Import_Shaurya_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_26_Select_Fiducial.png → BMRI_26_Fiducials_ACPC_Placed.png → BMRI_27_Fiducials_Di... | {
"id": "3dslicer_endtoend_217",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, apply Gauss... | 15 | 15 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Threshold_Ventricles_Segmentation.png|/home/rishu/Proj... | /home/rishu/Projects/3D slicer/MRI Brain |
218 | 3dslicer_endtoend_218 | Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram equalization for better contrast, apply histogram equalization for better contrast, threshold ventricles in the segmentation editor, use the Paint tool to refine segmentation boundaries, draw a circular ROI over ... | Import_Shaurya_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_Lat... | {
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"application": "3D Slicer",
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1920,
1080
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"loaded_image": "Import_Shaurya_Data.png"
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"instruction": "Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, apply histogr... | 14 | 14 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MR... | /home/rishu/Projects/3D slicer/MRI Brain |
219 | 3dslicer_endtoend_219 | Open MRI project for Shaurya, set layout to 1×2, and ensure axial and sagittal slices are visible, invert grayscale to highlight low-intensity structures, apply histogram equalization for better contrast, apply smoothing to the segmentation mask, threshold ventricles in the segmentation editor, compute ROI statistics f... | Import_Shaurya_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segment... | {
"id": "3dslicer_endtoend_219",
"initial_state": {
"application": "3D Slicer",
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1920,
1080
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"loaded_image": "Import_Shaurya_Data.png"
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"instruction": "Open MRI project for Shaurya, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, i... | 21 | 21 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/M... | /home/rishu/Projects/3D slicer/MRI Brain |
220 | 3dslicer_endtoend_220 | Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, run bias correction to remove shading artifacts, invert grayscale to highlight low-intensity structures, create a new segmentation for white and gray matter regions, create a new segmentation for white and gray matter regions,... | Import_Shaurya_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_26_Se... | {
"id": "3dslicer_endtoend_220",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
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"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, run bias co... | 15 | 15 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/... | /home/rishu/Projects/3D slicer/MRI Brain |
221 | 3dslicer_endtoend_221 | Open MRI project for Shaurya, set layout to 1×2, and ensure axial and sagittal slices are visible, invert grayscale to highlight low-intensity structures, normalize intensity levels across slices, apply smoothing to the segmentation mask, use the Paint tool to refine segmentation boundaries, draw a circular ROI over th... | Import_Shaurya_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_19_Se... | {
"id": "3dslicer_endtoend_221",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Open MRI project for Shaurya, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, i... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/... | /home/rishu/Projects/3D slicer/MRI Brain |
222 | 3dslicer_endtoend_222 | Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, invert grayscale to highlight low-intensity structures, apply Gaussian smoothing to denoise the volume, convert segmentation to 3D model for visualization, create a new segmentation for white and gray matter regions, place two... | Import_Shaurya_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3... | {
"id": "3dslicer_endtoend_222",
"initial_state": {
"application": "3D Slicer",
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1920,
1080
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"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, invert gray... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projec... | /home/rishu/Projects/3D slicer/MRI Brain |
223 | 3dslicer_endtoend_223 | Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, apply Gaussian smoothing to denoise the volume, run bias correction to remove shading artifacts, create a new segmentation for white and gray matter regions, use the Paint tool to refine segmentation boundaries, create a rectang... | Import_Shaurya_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation... | {
"id": "3dslicer_endtoend_223",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, apply Gaussia... | 19 | 19 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/... | /home/rishu/Projects/3D slicer/MRI Brain |
224 | 3dslicer_endtoend_224 | Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, apply Gaussian smoothing to denoise the volume, invert grayscale to highlight low-intensity structures, apply smoothing to the segmentation mask, convert segmentation to 3D model for visualization, place two fiducial points (A... | Import_Shaurya_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BM... | {
"id": "3dslicer_endtoend_224",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, apply Gauss... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projec... | /home/rishu/Projects/3D slicer/MRI Brain |
225 | 3dslicer_endtoend_225 | Open MRI project for Shaurya, set layout to 1×2, and ensure axial and sagittal slices are visible, invert grayscale to highlight low-intensity structures, invert grayscale to highlight low-intensity structures, convert segmentation to 3D model for visualization, convert segmentation to 3D model for visualization, compu... | Import_Shaurya_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_20_Select_Apply.png → BMRI_20_ROI_Statistics_Tabl... | {
"id": "3dslicer_endtoend_225",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Open MRI project for Shaurya, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, i... | 19 | 19 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D s... | /home/rishu/Projects/3D slicer/MRI Brain |
226 | 3dslicer_endtoend_226 | Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, run bias correction to remove shading artifacts, apply Gaussian smoothing to denoise the volume, apply smoothing to the segmentation mask, use the Paint tool to refine segmentation boundaries, place two fiducial points (AC and... | Import_Shaurya_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_26_Select_Fiducial.png → BMRI... | {
"id": "3dslicer_endtoend_226",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, run bias co... | 15 | 15 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/... | /home/rishu/Projects/3D slicer/MRI Brain |
227 | 3dslicer_endtoend_227 | Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, apply histogram equalization for better contrast, invert grayscale to highlight low-intensity structures, create a new segmentation for white and gray matter regions, threshold ventricles in the segmentation editor, place two ... | Import_Shaurya_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_S... | {
"id": "3dslicer_endtoend_227",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, apply histo... | 17 | 17 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects... | /home/rishu/Projects/3D slicer/MRI Brain |
228 | 3dslicer_endtoend_228 | Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, normalize intensity levels across slices, apply histogram equalization for better contrast, use the Paint tool to refine segmentation boundaries, create a new segmentation for white and gray matter regions, compute ROI statist... | Import_Shaurya_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_20_Select_Apply.png → BMRI_20_ROI_Statistics_Table.png ... | {
"id": "3dslicer_endtoend_228",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, normalize i... | 16 | 16 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D sl... | /home/rishu/Projects/3D slicer/MRI Brain |
229 | 3dslicer_endtoend_229 | Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, apply Gaussian smoothing to denoise the volume, run bias correction to remove shading artifacts, threshold ventricles in the segmentation editor, threshold ventricles in the segmentation editor, place two fiducial points (AC and... | Import_Shaurya_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_... | {
"id": "3dslicer_endtoend_229",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, apply Gaussia... | 20 | 20 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/... | /home/rishu/Projects/3D slicer/MRI Brain |
230 | 3dslicer_endtoend_230 | Open MRI project for Shaurya, set layout to 1×2, and ensure axial and sagittal slices are visible, apply histogram equalization for better contrast, invert grayscale to highlight low-intensity structures, apply smoothing to the segmentation mask, use the Paint tool to refine segmentation boundaries, create a rectangula... | Import_Shaurya_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_42_Scr... | {
"id": "3dslicer_endtoend_230",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Open MRI project for Shaurya, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, a... | 17 | 17 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/M... | /home/rishu/Projects/3D slicer/MRI Brain |
231 | 3dslicer_endtoend_231 | Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, invert grayscale to highlight low-intensity structures, apply Gaussian smoothing to denoise the volume, use the Paint tool to refine segmentation boundaries, convert segmentation to 3D model for visualization, place two fiducial... | Import_Shaurya_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_... | {
"id": "3dslicer_endtoend_231",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, invert graysc... | 21 | 21 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/... | /home/rishu/Projects/3D slicer/MRI Brain |
232 | 3dslicer_endtoend_232 | Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, run bias correction to remove shading artifacts, normalize intensity levels across slices, apply smoothing to the segmentation mask, apply smoothing to the segmentation mask, compute ROI statistics for mean and standard deviat... | Import_Shaurya_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_20_Select_Apply.png → BMRI_20_ROI_Statistics_Table.png → BMRI_21_Intensity_His... | {
"id": "3dslicer_endtoend_232",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, run bias co... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/... | /home/rishu/Projects/3D slicer/MRI Brain |
233 | 3dslicer_endtoend_233 | Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, apply histogram equalization for better contrast, apply histogram equalization for better contrast, use the Paint tool to refine segmentation boundaries, apply smoothing to the segmentation mask, compute ROI statistics for mea... | Import_Shaurya_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_20_Select_Apply.png → BMRI_20_ROI_Statistics_Table.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_36_Export_Labelmap_Di... | {
"id": "3dslicer_endtoend_233",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, apply histo... | 15 | 15 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Apply_Tool.png|/home/rishu/Projec... | /home/rishu/Projects/3D slicer/MRI Brain |
234 | 3dslicer_endtoend_234 | Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, normalize intensity levels across slices, normalize intensity levels across slices, create a new segmentation for white and gray matter regions, use the Paint tool to refine segmentation boundaries, create a rectangular ROI to... | Import_Shaurya_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_42_ScreenCapture_Module.png → BMRI_19_Select_Circle_R... | {
"id": "3dslicer_endtoend_234",
"initial_state": {
"application": "3D Slicer",
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1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, normalize i... | 11 | 11 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer... | /home/rishu/Projects/3D slicer/MRI Brain |
235 | 3dslicer_endtoend_235 | Open MRI project for Shaurya, set layout to 1×2, and ensure axial and sagittal slices are visible, normalize intensity levels across slices, apply Gaussian smoothing to denoise the volume, use the Paint tool to refine segmentation boundaries, apply smoothing to the segmentation mask, add annotation label to highlight R... | Import_Shaurya_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_25_Select_File_Tool.png → BMRI_25_Export_STL_Con... | {
"id": "3dslicer_endtoend_235",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Open MRI project for Shaurya, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, n... | 17 | 17 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer... | /home/rishu/Projects/3D slicer/MRI Brain |
236 | 3dslicer_endtoend_236 | Open MRI project for Shaurya, set layout to 1×2, and ensure axial and sagittal slices are visible, invert grayscale to highlight low-intensity structures, invert grayscale to highlight low-intensity structures, threshold ventricles in the segmentation editor, create a new segmentation for white and gray matter regions,... | Import_Shaurya_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmen... | {
"id": "3dslicer_endtoend_236",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Open MRI project for Shaurya, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, i... | 17 | 17 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D s... | /home/rishu/Projects/3D slicer/MRI Brain |
237 | 3dslicer_endtoend_237 | Open MRI project for Shaurya, set layout to 1×2, and ensure axial and sagittal slices are visible, apply histogram equalization for better contrast, run bias correction to remove shading artifacts, use the Paint tool to refine segmentation boundaries, create a new segmentation for white and gray matter regions, place t... | Import_Shaurya_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_... | {
"id": "3dslicer_endtoend_237",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Open MRI project for Shaurya, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, a... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer... | /home/rishu/Projects/3D slicer/MRI Brain |
238 | 3dslicer_endtoend_238 | Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, normalize intensity levels across slices, run bias correction to remove shading artifacts, create a new segmentation for white and gray matter regions, apply smoothing to the segmentation mask, draw a circular ROI over the left ... | Import_Shaurya_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_... | {
"id": "3dslicer_endtoend_238",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, normalize int... | 16 | 16 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/... | /home/rishu/Projects/3D slicer/MRI Brain |
239 | 3dslicer_endtoend_239 | Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, apply Gaussian smoothing to denoise the volume, normalize intensity levels across slices, use the Paint tool to refine segmentation boundaries, convert segmentation to 3D model for visualization, draw a circular ROI over the l... | Import_Shaurya_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_1... | {
"id": "3dslicer_endtoend_239",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, apply Gauss... | 17 | 17 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D ... | /home/rishu/Projects/3D slicer/MRI Brain |
240 | 3dslicer_endtoend_240 | Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, apply Gaussian smoothing to denoise the volume, apply histogram equalization for better contrast, apply smoothing to the segmentation mask, convert segmentation to 3D model for visualization, add annotation label to highlight RO... | Import_Shaurya_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_38_MPR_Sl... | {
"id": "3dslicer_endtoend_240",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, apply Gaussia... | 16 | 16 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/... | /home/rishu/Projects/3D slicer/MRI Brain |
241 | 3dslicer_endtoend_241 | Open MRI project for Shaurya, set layout to 1×2, and ensure axial and sagittal slices are visible, normalize intensity levels across slices, normalize intensity levels across slices, threshold ventricles in the segmentation editor, use the Paint tool to refine segmentation boundaries, create a rectangular ROI to isolat... | Import_Shaurya_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_42_ScreenCapture_Module.png → BMRI_22_Change_... | {
"id": "3dslicer_endtoend_241",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Open MRI project for Shaurya, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, n... | 16 | 16 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/... | /home/rishu/Projects/3D slicer/MRI Brain |
242 | 3dslicer_endtoend_242 | Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, invert grayscale to highlight low-intensity structures, invert grayscale to highlight low-intensity structures, threshold ventricles in the segmentation editor, create a new segmentation for white and gray matter regions, place ... | Import_Shaurya_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segment... | {
"id": "3dslicer_endtoend_242",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, invert graysc... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D sl... | /home/rishu/Projects/3D slicer/MRI Brain |
243 | 3dslicer_endtoend_243 | Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram equalization for better contrast, normalize intensity levels across slices, create a new segmentation for white and gray matter regions, convert segmentation to 3D model for visualization, compute ROI statistics ... | Import_Shaurya_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_Surface... | {
"id": "3dslicer_endtoend_243",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, apply histogr... | 19 | 19 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/M... | /home/rishu/Projects/3D slicer/MRI Brain |
244 | 3dslicer_endtoend_244 | Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, normalize intensity levels across slices, apply Gaussian smoothing to denoise the volume, convert segmentation to 3D model for visualization, use the Paint tool to refine segmentation boundaries, add annotation label to highli... | Import_Shaurya_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_25_Select_File_Tool.png → BMRI_25_Expo... | {
"id": "3dslicer_endtoend_244",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, normalize i... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D ... | /home/rishu/Projects/3D slicer/MRI Brain |
245 | 3dslicer_endtoend_245 | Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, run bias correction to remove shading artifacts, apply histogram equalization for better contrast, threshold ventricles in the segmentation editor, threshold ventricles in the segmentation editor, compute ROI statistics for me... | Import_Shaurya_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_20_Select_Apply.png → BMRI_20_ROI_S... | {
"id": "3dslicer_endtoend_245",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, run bias co... | 19 | 19 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/... | /home/rishu/Projects/3D slicer/MRI Brain |
246 | 3dslicer_endtoend_246 | Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, normalize intensity levels across slices, normalize intensity levels across slices, convert segmentation to 3D model for visualization, apply smoothing to the segmentation mask, place two fiducial points (AC and PC) and compute ... | Import_Shaurya_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_26_Select_Fiducial.png → BMRI_26_Fiducials_ACPC_P... | {
"id": "3dslicer_endtoend_246",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, normalize int... | 17 | 17 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/M... | /home/rishu/Projects/3D slicer/MRI Brain |
247 | 3dslicer_endtoend_247 | Open MRI project for Shaurya, set layout to 1×2, and ensure axial and sagittal slices are visible, apply Gaussian smoothing to denoise the volume, invert grayscale to highlight low-intensity structures, create a new segmentation for white and gray matter regions, use the Paint tool to refine segmentation boundaries, cr... | Import_Shaurya_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothi... | {
"id": "3dslicer_endtoend_247",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Open MRI project for Shaurya, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, a... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer... | /home/rishu/Projects/3D slicer/MRI Brain |
248 | 3dslicer_endtoend_248 | Open MRI project for Shaurya, set layout to 1×2, and ensure axial and sagittal slices are visible, apply histogram equalization for better contrast, apply histogram equalization for better contrast, threshold ventricles in the segmentation editor, convert segmentation to 3D model for visualization, add annotation label... | Import_Shaurya_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_13_3D... | {
"id": "3dslicer_endtoend_248",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Open MRI project for Shaurya, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, a... | 19 | 19 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/M... | /home/rishu/Projects/3D slicer/MRI Brain |
249 | 3dslicer_endtoend_249 | Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, normalize intensity levels across slices, normalize intensity levels across slices, create a new segmentation for white and gray matter regions, create a new segmentation for white and gray matter regions, add annotation label t... | Import_Shaurya_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_46_SaveScene_Dialog.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_22_Change_Opacity_And_Slice.png → BMRI_... | {
"id": "3dslicer_endtoend_249",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, normalize int... | 14 | 14 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/M... | /home/rishu/Projects/3D slicer/MRI Brain |
250 | 3dslicer_endtoend_250 | Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, apply Gaussian smoothing to denoise the volume, invert grayscale to highlight low-intensity structures, threshold ventricles in the segmentation editor, apply smoothing to the segmentation mask, draw a circular ROI over the left... | Import_Shaurya_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmen... | {
"id": "3dslicer_endtoend_250",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, apply Gaussia... | 19 | 19 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/... | /home/rishu/Projects/3D slicer/MRI Brain |
251 | 3dslicer_endtoend_251 | Open MRI project for Shaurya, set layout to 1×2, and ensure axial and sagittal slices are visible, invert grayscale to highlight low-intensity structures, apply Gaussian smoothing to denoise the volume, convert segmentation to 3D model for visualization, apply smoothing to the segmentation mask, create a rectangular RO... | Import_Shaurya_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Mo... | {
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1920,
1080
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},
"instruction": "Open MRI project for Shaurya, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, i... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer... | /home/rishu/Projects/3D slicer/MRI Brain |
252 | 3dslicer_endtoend_252 | Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, apply Gaussian smoothing to denoise the volume, run bias correction to remove shading artifacts, apply smoothing to the segmentation mask, create a new segmentation for white and gray matter regions, draw a circular ROI over t... | Import_Shaurya_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_19_... | {
"id": "3dslicer_endtoend_252",
"initial_state": {
"application": "3D Slicer",
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1920,
1080
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"loaded_image": "Import_Shaurya_Data.png"
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"instruction": "Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, apply Gauss... | 15 | 15 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/... | /home/rishu/Projects/3D slicer/MRI Brain |
253 | 3dslicer_endtoend_253 | Open MRI project for Shaurya, set layout to 1×2, and ensure axial and sagittal slices are visible, run bias correction to remove shading artifacts, apply histogram equalization for better contrast, use the Paint tool to refine segmentation boundaries, apply smoothing to the segmentation mask, add annotation label to hi... | Import_Shaurya_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_35_Segmentation_Smoothing_Applied.png → BM... | {
"id": "3dslicer_endtoend_253",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Open MRI project for Shaurya, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, r... | 17 | 17 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer... | /home/rishu/Projects/3D slicer/MRI Brain |
254 | 3dslicer_endtoend_254 | Open MRI project for Shaurya, set layout to 1×2, and ensure axial and sagittal slices are visible, normalize intensity levels across slices, invert grayscale to highlight low-intensity structures, convert segmentation to 3D model for visualization, threshold ventricles in the segmentation editor, compute ROI statistics... | Import_Shaurya_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_23_Segmen... | {
"id": "3dslicer_endtoend_254",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
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"loaded_image": "Import_Shaurya_Data.png"
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"instruction": "Open MRI project for Shaurya, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, n... | 22 | 22 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/... | /home/rishu/Projects/3D slicer/MRI Brain |
255 | 3dslicer_endtoend_255 | Open MRI project for Shaurya, set layout to 1×2, and ensure axial and sagittal slices are visible, apply histogram equalization for better contrast, apply Gaussian smoothing to denoise the volume, create a new segmentation for white and gray matter regions, create a new segmentation for white and gray matter regions, a... | Import_Shaurya_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_46_SaveScene_Dialog.png → B... | {
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"application": "3D Slicer",
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1920,
1080
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"loaded_image": "Import_Shaurya_Data.png"
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"instruction": "Open MRI project for Shaurya, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, a... | 13 | 13 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer... | /home/rishu/Projects/3D slicer/MRI Brain |
256 | 3dslicer_endtoend_256 | Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, invert grayscale to highlight low-intensity structures, apply Gaussian smoothing to denoise the volume, threshold ventricles in the segmentation editor, use the Paint tool to refine segmentation boundaries, draw a circular ROI... | Import_Shaurya_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png →... | {
"id": "3dslicer_endtoend_256",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, invert gray... | 19 | 19 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projec... | /home/rishu/Projects/3D slicer/MRI Brain |
257 | 3dslicer_endtoend_257 | Open MRI project for Shaurya, set layout to 1×2, and ensure axial and sagittal slices are visible, normalize intensity levels across slices, run bias correction to remove shading artifacts, create a new segmentation for white and gray matter regions, apply smoothing to the segmentation mask, place two fiducial points (... | Import_Shaurya_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation... | {
"id": "3dslicer_endtoend_257",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Open MRI project for Shaurya, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, n... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer... | /home/rishu/Projects/3D slicer/MRI Brain |
258 | 3dslicer_endtoend_258 | Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, normalize intensity levels across slices, invert grayscale to highlight low-intensity structures, create a new segmentation for white and gray matter regions, create a new segmentation for white and gray matter regions, comput... | Import_Shaurya_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_20_Select_Apply.png → BMRI_20_ROI_Statistics_Table.png → B... | {
"id": "3dslicer_endtoend_258",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, normalize i... | 15 | 15 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Project... | /home/rishu/Projects/3D slicer/MRI Brain |
259 | 3dslicer_endtoend_259 | Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, apply Gaussian smoothing to denoise the volume, apply histogram equalization for better contrast, apply smoothing to the segmentation mask, convert segmentation to 3D model for visualization, create a rectangular ROI to isolat... | Import_Shaurya_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_42... | {
"id": "3dslicer_endtoend_259",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, apply Gauss... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D s... | /home/rishu/Projects/3D slicer/MRI Brain |
260 | 3dslicer_endtoend_260 | Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, run bias correction to remove shading artifacts, run bias correction to remove shading artifacts, create a new segmentation for white and gray matter regions, use the Paint tool to refine segmentation boundaries, create a rect... | Import_Shaurya_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_... | {
"id": "3dslicer_endtoend_260",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, run bias co... | 13 | 13 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/... | /home/rishu/Projects/3D slicer/MRI Brain |
261 | 3dslicer_endtoend_261 | Open MRI project for Shaurya, set layout to 1×2, and ensure axial and sagittal slices are visible, run bias correction to remove shading artifacts, apply Gaussian smoothing to denoise the volume, use the Paint tool to refine segmentation boundaries, threshold ventricles in the segmentation editor, place two fiducial po... | Import_Shaurya_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI... | {
"id": "3dslicer_endtoend_261",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Open MRI project for Shaurya, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, r... | 21 | 21 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer... | /home/rishu/Projects/3D slicer/MRI Brain |
262 | 3dslicer_endtoend_262 | Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, invert grayscale to highlight low-intensity structures, invert grayscale to highlight low-intensity structures, use the Paint tool to refine segmentation boundaries, threshold ventricles in the segmentation editor, draw a circul... | Import_Shaurya_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_19... | {
"id": "3dslicer_endtoend_262",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, invert graysc... | 15 | 15 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D sl... | /home/rishu/Projects/3D slicer/MRI Brain |
263 | 3dslicer_endtoend_263 | Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, apply histogram equalization for better contrast, invert grayscale to highlight low-intensity structures, apply smoothing to the segmentation mask, convert segmentation to 3D model for visualization, compute ROI statistics for... | Import_Shaurya_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI... | {
"id": "3dslicer_endtoend_263",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, apply histo... | 17 | 17 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects... | /home/rishu/Projects/3D slicer/MRI Brain |
264 | 3dslicer_endtoend_264 | Open MRI project for Shaurya, set layout to 1×2, and ensure axial and sagittal slices are visible, apply Gaussian smoothing to denoise the volume, normalize intensity levels across slices, create a new segmentation for white and gray matter regions, threshold ventricles in the segmentation editor, compute ROI statistic... | Import_Shaurya_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentat... | {
"id": "3dslicer_endtoend_264",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Open MRI project for Shaurya, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, a... | 21 | 21 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer... | /home/rishu/Projects/3D slicer/MRI Brain |
265 | 3dslicer_endtoend_265 | Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, apply histogram equalization for better contrast, apply histogram equalization for better contrast, create a new segmentation for white and gray matter regions, apply smoothing to the segmentation mask, add annotation label to... | Import_Shaurya_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_25_Select_File_Tool.png → BMRI_25_Export_STL_Confirmation... | {
"id": "3dslicer_endtoend_265",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, apply histo... | 12 | 12 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/... | /home/rishu/Projects/3D slicer/MRI Brain |
266 | 3dslicer_endtoend_266 | Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, invert grayscale to highlight low-intensity structures, apply histogram equalization for better contrast, use the Paint tool to refine segmentation boundaries, apply smoothing to the segmentation mask, place two fiducial points ... | Import_Shaurya_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_26_Sele... | {
"id": "3dslicer_endtoend_266",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, invert graysc... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MR... | /home/rishu/Projects/3D slicer/MRI Brain |
267 | 3dslicer_endtoend_267 | Open MRI project for Shaurya, set layout to 1×2, and ensure axial and sagittal slices are visible, run bias correction to remove shading artifacts, apply Gaussian smoothing to denoise the volume, create a new segmentation for white and gray matter regions, use the Paint tool to refine segmentation boundaries, place two... | Import_Shaurya_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentatio... | {
"id": "3dslicer_endtoend_267",
"initial_state": {
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"instruction": "Open MRI project for Shaurya, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, r... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer... | /home/rishu/Projects/3D slicer/MRI Brain |
268 | 3dslicer_endtoend_268 | Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram equalization for better contrast, invert grayscale to highlight low-intensity structures, convert segmentation to 3D model for visualization, apply smoothing to the segmentation mask, add annotation label to high... | Import_Shaurya_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model... | {
"id": "3dslicer_endtoend_268",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, apply histogr... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MR... | /home/rishu/Projects/3D slicer/MRI Brain |
269 | 3dslicer_endtoend_269 | Open MRI project for Shaurya, set layout to 1×2, and ensure axial and sagittal slices are visible, normalize intensity levels across slices, apply Gaussian smoothing to denoise the volume, apply smoothing to the segmentation mask, create a new segmentation for white and gray matter regions, place two fiducial points (A... | Import_Shaurya_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_26_Select_Fiducial.png... | {
"id": "3dslicer_endtoend_269",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Open MRI project for Shaurya, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, n... | 17 | 17 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer... | /home/rishu/Projects/3D slicer/MRI Brain |
270 | 3dslicer_endtoend_270 | Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, normalize intensity levels across slices, run bias correction to remove shading artifacts, apply smoothing to the segmentation mask, threshold ventricles in the segmentation editor, add annotation label to highlight ROI region, ... | Import_Shaurya_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_3... | {
"id": "3dslicer_endtoend_270",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, normalize int... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/... | /home/rishu/Projects/3D slicer/MRI Brain |
271 | 3dslicer_endtoend_271 | Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, run bias correction to remove shading artifacts, normalize intensity levels across slices, apply smoothing to the segmentation mask, convert segmentation to 3D model for visualization, draw a circular ROI over the left ventricle... | Import_Shaurya_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMR... | {
"id": "3dslicer_endtoend_271",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, run bias corr... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/... | /home/rishu/Projects/3D slicer/MRI Brain |
272 | 3dslicer_endtoend_272 | Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, run bias correction to remove shading artifacts, apply Gaussian smoothing to denoise the volume, create a new segmentation for white and gray matter regions, use the Paint tool to refine segmentation boundaries, create a rectang... | Import_Shaurya_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation... | {
"id": "3dslicer_endtoend_272",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, run bias corr... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/... | /home/rishu/Projects/3D slicer/MRI Brain |
273 | 3dslicer_endtoend_273 | Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, apply histogram equalization for better contrast, normalize intensity levels across slices, apply smoothing to the segmentation mask, convert segmentation to 3D model for visualization, create a rectangular ROI to isolate temp... | Import_Shaurya_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_36_Export_Labelmap_Dialog.png → BMRI_06_Exp... | {
"id": "3dslicer_endtoend_273",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, apply histo... | 16 | 16 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D sl... | /home/rishu/Projects/3D slicer/MRI Brain |
274 | 3dslicer_endtoend_274 | Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram equalization for better contrast, apply Gaussian smoothing to denoise the volume, apply smoothing to the segmentation mask, threshold ventricles in the segmentation editor, compute ROI statistics for mean and sta... | Import_Shaurya_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_20_Select... | {
"id": "3dslicer_endtoend_274",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, apply histogr... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/... | /home/rishu/Projects/3D slicer/MRI Brain |
275 | 3dslicer_endtoend_275 | Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, invert grayscale to highlight low-intensity structures, invert grayscale to highlight low-intensity structures, convert segmentation to 3D model for visualization, threshold ventricles in the segmentation editor, place two fid... | Import_Shaurya_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png →... | {
"id": "3dslicer_endtoend_275",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, invert gray... | 19 | 19 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Scroll_To_Inverted_Gray.png|/home/rishu/Projects/... | /home/rishu/Projects/3D slicer/MRI Brain |
276 | 3dslicer_endtoend_276 | Open MRI project for Shaurya, set layout to 1×2, and ensure axial and sagittal slices are visible, apply Gaussian smoothing to denoise the volume, run bias correction to remove shading artifacts, threshold ventricles in the segmentation editor, convert segmentation to 3D model for visualization, add annotation label to... | Import_Shaurya_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI... | {
"id": "3dslicer_endtoend_276",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Open MRI project for Shaurya, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, a... | 20 | 20 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer... | /home/rishu/Projects/3D slicer/MRI Brain |
277 | 3dslicer_endtoend_277 | Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, apply Gaussian smoothing to denoise the volume, run bias correction to remove shading artifacts, threshold ventricles in the segmentation editor, use the Paint tool to refine segmentation boundaries, create a rectangular ROI t... | Import_Shaurya_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmentation_Smoothing_Apply_T... | {
"id": "3dslicer_endtoend_277",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, apply Gauss... | 19 | 19 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/... | /home/rishu/Projects/3D slicer/MRI Brain |
278 | 3dslicer_endtoend_278 | Open MRI project for Shaurya, set layout to 1×2, and ensure axial and sagittal slices are visible, invert grayscale to highlight low-intensity structures, invert grayscale to highlight low-intensity structures, use the Paint tool to refine segmentation boundaries, use the Paint tool to refine segmentation boundaries, a... | Import_Shaurya_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_42_ScreenCapture_Module.png → BMRI_24_Model_3DView... | {
"id": "3dslicer_endtoend_278",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Open MRI project for Shaurya, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, i... | 16 | 16 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D s... | /home/rishu/Projects/3D slicer/MRI Brain |
279 | 3dslicer_endtoend_279 | Open MRI project for Shaurya, set layout to 1×2, and ensure axial and sagittal slices are visible, invert grayscale to highlight low-intensity structures, apply histogram equalization for better contrast, use the Paint tool to refine segmentation boundaries, apply smoothing to the segmentation mask, compute ROI statist... | Import_Shaurya_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_20_Sel... | {
"id": "3dslicer_endtoend_279",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Open MRI project for Shaurya, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, i... | 20 | 20 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/M... | /home/rishu/Projects/3D slicer/MRI Brain |
280 | 3dslicer_endtoend_280 | Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, apply Gaussian smoothing to denoise the volume, invert grayscale to highlight low-intensity structures, create a new segmentation for white and gray matter regions, apply smoothing to the segmentation mask, compute ROI statist... | Import_Shaurya_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_20_Select_Ap... | {
"id": "3dslicer_endtoend_280",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, apply Gauss... | 19 | 19 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projec... | /home/rishu/Projects/3D slicer/MRI Brain |
281 | 3dslicer_endtoend_281 | Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, invert grayscale to highlight low-intensity structures, apply Gaussian smoothing to denoise the volume, apply smoothing to the segmentation mask, convert segmentation to 3D model for visualization, draw a circular ROI over the... | Import_Shaurya_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BM... | {
"id": "3dslicer_endtoend_281",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, invert gray... | 17 | 17 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projec... | /home/rishu/Projects/3D slicer/MRI Brain |
282 | 3dslicer_endtoend_282 | Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, normalize intensity levels across slices, invert grayscale to highlight low-intensity structures, create a new segmentation for white and gray matter regions, create a new segmentation for white and gray matter regions, add anno... | Import_Shaurya_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_37_Layout_FourUp_View.png... | {
"id": "3dslicer_endtoend_282",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, normalize int... | 15 | 15 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/M... | /home/rishu/Projects/3D slicer/MRI Brain |
283 | 3dslicer_endtoend_283 | Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, apply Gaussian smoothing to denoise the volume, apply histogram equalization for better contrast, convert segmentation to 3D model for visualization, apply smoothing to the segmentation mask, add annotation label to highlight ... | Import_Shaurya_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_3... | {
"id": "3dslicer_endtoend_283",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, apply Gauss... | 15 | 15 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D s... | /home/rishu/Projects/3D slicer/MRI Brain |
284 | 3dslicer_endtoend_284 | Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, invert grayscale to highlight low-intensity structures, invert grayscale to highlight low-intensity structures, convert segmentation to 3D model for visualization, apply smoothing to the segmentation mask, create a rectangular... | Import_Shaurya_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_42_ScreenCapture_Module.png → BMRI_22_... | {
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"instruction": "Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, invert gray... | 16 | 16 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Scroll_To_Inverted_Gray.png|/home/rishu/Projects/... | /home/rishu/Projects/3D slicer/MRI Brain |
285 | 3dslicer_endtoend_285 | Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, normalize intensity levels across slices, run bias correction to remove shading artifacts, convert segmentation to 3D model for visualization, threshold ventricles in the segmentation editor, draw a circular ROI over the left ... | Import_Shaurya_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_23_Segmentation_To_Model_Conversio... | {
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"instruction": "Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, normalize i... | 19 | 19 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/... | /home/rishu/Projects/3D slicer/MRI Brain |
286 | 3dslicer_endtoend_286 | Open MRI project for Shaurya, set layout to 1×2, and ensure axial and sagittal slices are visible, apply histogram equalization for better contrast, apply Gaussian smoothing to denoise the volume, create a new segmentation for white and gray matter regions, apply smoothing to the segmentation mask, place two fiducial p... | Import_Shaurya_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_26_Select_Fiducial.png ... | {
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"instruction": "Open MRI project for Shaurya, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, a... | 16 | 16 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer... | /home/rishu/Projects/3D slicer/MRI Brain |
287 | 3dslicer_endtoend_287 | Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, run bias correction to remove shading artifacts, invert grayscale to highlight low-intensity structures, create a new segmentation for white and gray matter regions, apply smoothing to the segmentation mask, compute ROI statisti... | Import_Shaurya_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Seg... | {
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"application": "3D Slicer",
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1920,
1080
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"loaded_image": "Import_Shaurya_Data.png"
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"instruction": "Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, run bias corr... | 20 | 20 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/... | /home/rishu/Projects/3D slicer/MRI Brain |
288 | 3dslicer_endtoend_288 | Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram equalization for better contrast, apply histogram equalization for better contrast, use the Paint tool to refine segmentation boundaries, threshold ventricles in the segmentation editor, compute ROI statistics fo... | Import_Shaurya_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_20_Select_Apply.png → BMRI_20_ROI_Statistics_Ta... | {
"id": "3dslicer_endtoend_288",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
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"loaded_image": "Import_Shaurya_Data.png"
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"instruction": "Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, apply histogr... | 19 | 19 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MR... | /home/rishu/Projects/3D slicer/MRI Brain |
289 | 3dslicer_endtoend_289 | Open MRI project for Shaurya, set layout to 1×2, and ensure axial and sagittal slices are visible, apply histogram equalization for better contrast, run bias correction to remove shading artifacts, create a new segmentation for white and gray matter regions, create a new segmentation for white and gray matter regions, ... | Import_Shaurya_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_20_Select_Apply.... | {
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"application": "3D Slicer",
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1920,
1080
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"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Open MRI project for Shaurya, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, a... | 17 | 17 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer... | /home/rishu/Projects/3D slicer/MRI Brain |
290 | 3dslicer_endtoend_290 | Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, normalize intensity levels across slices, normalize intensity levels across slices, threshold ventricles in the segmentation editor, use the Paint tool to refine segmentation boundaries, draw a circular ROI over the left ventr... | Import_Shaurya_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → B... | {
"id": "3dslicer_endtoend_290",
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"application": "3D Slicer",
"display_resolution": [
1920,
1080
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"loaded_image": "Import_Shaurya_Data.png"
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"instruction": "Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, normalize i... | 16 | 16 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Threshold_Ventricles_Segmentation.png|/home/rishu/Proje... | /home/rishu/Projects/3D slicer/MRI Brain |
291 | 3dslicer_endtoend_291 | Open MRI project for Shaurya, set layout to 1×2, and ensure axial and sagittal slices are visible, normalize intensity levels across slices, apply Gaussian smoothing to denoise the volume, apply smoothing to the segmentation mask, apply smoothing to the segmentation mask, place two fiducial points (AC and PC) and compu... | Import_Shaurya_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_26_Select_Fiducial.png → BMRI_26_Fiducials_ACPC_Placed.png → BMRI_27_Fiducials_Distance_Measured... | {
"id": "3dslicer_endtoend_291",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Open MRI project for Shaurya, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, n... | 16 | 16 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer... | /home/rishu/Projects/3D slicer/MRI Brain |
292 | 3dslicer_endtoend_292 | Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, apply Gaussian smoothing to denoise the volume, run bias correction to remove shading artifacts, threshold ventricles in the segmentation editor, convert segmentation to 3D model for visualization, add annotation label to highli... | Import_Shaurya_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_... | {
"id": "3dslicer_endtoend_292",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, apply Gaussia... | 21 | 21 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/... | /home/rishu/Projects/3D slicer/MRI Brain |
293 | 3dslicer_endtoend_293 | Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, normalize intensity levels across slices, apply histogram equalization for better contrast, convert segmentation to 3D model for visualization, convert segmentation to 3D model for visualization, draw a circular ROI over the l... | Import_Shaurya_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_38_MP... | {
"id": "3dslicer_endtoend_293",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
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"loaded_image": "Import_Shaurya_Data.png"
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"instruction": "Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, normalize i... | 13 | 13 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D sl... | /home/rishu/Projects/3D slicer/MRI Brain |
294 | 3dslicer_endtoend_294 | Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, invert grayscale to highlight low-intensity structures, run bias correction to remove shading artifacts, threshold ventricles in the segmentation editor, threshold ventricles in the segmentation editor, place two fiducial poin... | Import_Shaurya_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.p... | {
"id": "3dslicer_endtoend_294",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
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"loaded_image": "Import_Shaurya_Data.png"
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"instruction": "Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, invert gray... | 17 | 17 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/... | /home/rishu/Projects/3D slicer/MRI Brain |
295 | 3dslicer_endtoend_295 | Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, normalize intensity levels across slices, invert grayscale to highlight low-intensity structures, convert segmentation to 3D model for visualization, use the Paint tool to refine segmentation boundaries, create a rectangular R... | Import_Shaurya_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → ... | {
"id": "3dslicer_endtoend_295",
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"application": "3D Slicer",
"display_resolution": [
1920,
1080
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"loaded_image": "Import_Shaurya_Data.png"
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"instruction": "Load MRI brain series of Shaurya, import the dataset, and verify orientation in Four-up view, normalize i... | 17 | 17 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Project... | /home/rishu/Projects/3D slicer/MRI Brain |
296 | 3dslicer_endtoend_296 | Open MRI project for Shaurya, set layout to 1×2, and ensure axial and sagittal slices are visible, invert grayscale to highlight low-intensity structures, apply Gaussian smoothing to denoise the volume, threshold ventricles in the segmentation editor, create a new segmentation for white and gray matter regions, place t... | Import_Shaurya_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_04_Add_N... | {
"id": "3dslicer_endtoend_296",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Open MRI project for Shaurya, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, i... | 19 | 19 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer... | /home/rishu/Projects/3D slicer/MRI Brain |
297 | 3dslicer_endtoend_297 | Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, normalize intensity levels across slices, run bias correction to remove shading artifacts, convert segmentation to 3D model for visualization, apply smoothing to the segmentation mask, add annotation label to highlight ROI regio... | Import_Shaurya_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMR... | {
"id": "3dslicer_endtoend_297",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, normalize int... | 19 | 19 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/... | /home/rishu/Projects/3D slicer/MRI Brain |
298 | 3dslicer_endtoend_298 | Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, run bias correction to remove shading artifacts, normalize intensity levels across slices, threshold ventricles in the segmentation editor, create a new segmentation for white and gray matter regions, compute ROI statistics for ... | Import_Shaurya_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_0... | {
"id": "3dslicer_endtoend_298",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, run bias corr... | 22 | 22 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/... | /home/rishu/Projects/3D slicer/MRI Brain |
299 | 3dslicer_endtoend_299 | Open MRI project for Shaurya, set layout to 1×2, and ensure axial and sagittal slices are visible, normalize intensity levels across slices, invert grayscale to highlight low-intensity structures, convert segmentation to 3D model for visualization, convert segmentation to 3D model for visualization, add annotation labe... | Import_Shaurya_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_25_Select... | {
"id": "3dslicer_endtoend_299",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Open MRI project for Shaurya, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, n... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/... | /home/rishu/Projects/3D slicer/MRI Brain |
300 | 3dslicer_endtoend_300 | Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, apply Gaussian smoothing to denoise the volume, apply Gaussian smoothing to denoise the volume, create a new segmentation for white and gray matter regions, apply smoothing to the segmentation mask, draw a circular ROI over the ... | Import_Shaurya_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_Ci... | {
"id": "3dslicer_endtoend_300",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Shaurya_Data.png"
},
"instruction": "Import MRI volume of Shaurya, open the Data module, and confirm T1 and T2 scans are loaded, apply Gaussia... | 14 | 14 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Shaurya_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/... | /home/rishu/Projects/3D slicer/MRI Brain |
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