serial_number int64 1 315 | task_id stringlengths 21 21 | task stringlengths 421 509 | image_sequence stringlengths 408 924 | json_data stringlengths 3.77k 7.08k | num_steps int64 11 24 | num_images int64 11 24 | image_paths stringlengths 839 1.86k | images_dir stringclasses 1
value |
|---|---|---|---|---|---|---|---|---|
101 | 3dslicer_endtoend_101 | Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, invert grayscale to highlight low-intensity structures, run bias correction to remove shading artifacts, convert segmentation to 3D model for visualization, convert segmentation to 3D model for visualization, add annotation labe... | Import_Akash_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png... | {
"id": "3dslicer_endtoend_101",
"initial_state": {
"application": "3D Slicer",
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1920,
1080
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"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, invert grayscal... | 15 | 15 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Pr... | /home/rishu/Projects/3D slicer/MRI Brain |
102 | 3dslicer_endtoend_102 | Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, run bias correction to remove shading artifacts, invert grayscale to highlight low-intensity structures, apply smoothing to the segmentation mask, threshold ventricles in the segmentation editor, create a rectangular ROI to isolat... | Import_Akash_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_... | {
"id": "3dslicer_endtoend_102",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, run bias correcti... | 19 | 19 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MR... | /home/rishu/Projects/3D slicer/MRI Brain |
103 | 3dslicer_endtoend_103 | Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, normalize intensity levels across slices, run bias correction to remove shading artifacts, use the Paint tool to refine segmentation boundaries, use the Paint tool to refine segmentation boundaries, draw a circular ROI over the ... | Import_Akash_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png →... | {
"id": "3dslicer_endtoend_103",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, normalize inten... | 16 | 16 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Pr... | /home/rishu/Projects/3D slicer/MRI Brain |
104 | 3dslicer_endtoend_104 | Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, normalize intensity levels across slices, apply Gaussian smoothing to denoise the volume, convert segmentation to 3D model for visualization, convert segmentation to 3D model for visualization, compute ROI statistics for mean an... | Import_Akash_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_20_Select_Apply.png → BMRI_20_ROI_Statistics_Table.png → BMRI_21_Intensity_Histogram_Plo... | {
"id": "3dslicer_endtoend_104",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
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"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, normalize inten... | 19 | 19 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D sl... | /home/rishu/Projects/3D slicer/MRI Brain |
105 | 3dslicer_endtoend_105 | Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, apply histogram equalization for better contrast, apply histogram equalization for better contrast, create a new segmentation for white and gray matter regions, use the Paint tool to refine segmentation boundaries, compute ROI s... | Import_Akash_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_20_Select_Apply.png → BMRI_20_ROI_Statistics_Table.png → BMRI_12_Select_Volume_Rendering_Tool.png... | {
"id": "3dslicer_endtoend_105",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
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"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, apply histogram... | 15 | 15 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MR... | /home/rishu/Projects/3D slicer/MRI Brain |
106 | 3dslicer_endtoend_106 | Open MRI project for Rishu, set layout to 1×2, and ensure axial and sagittal slices are visible, normalize intensity levels across slices, run bias correction to remove shading artifacts, apply smoothing to the segmentation mask, threshold ventricles in the segmentation editor, create a rectangular ROI to isolate tempo... | Import_Rishu_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35... | {
"id": "3dslicer_endtoend_106",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Open MRI project for Rishu, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, norma... | 19 | 19 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/M... | /home/rishu/Projects/3D slicer/MRI Brain |
107 | 3dslicer_endtoend_107 | Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, apply Gaussian smoothing to denoise the volume, invert grayscale to highlight low-intensity structures, use the Paint tool to refine segmentation boundaries, threshold ventricles in the segmentation editor, place two fiducial po... | Import_Rishu_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → B... | {
"id": "3dslicer_endtoend_107",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, apply Gaussian ... | 20 | 20 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects... | /home/rishu/Projects/3D slicer/MRI Brain |
108 | 3dslicer_endtoend_108 | Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, normalize intensity levels across slices, invert grayscale to highlight low-intensity structures, apply smoothing to the segmentation mask, apply smoothing to the segmentation mask, draw a circular ROI over the left ventricle an... | Import_Rishu_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_25_Sel... | {
"id": "3dslicer_endtoend_108",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, normalize inten... | 16 | 16 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/... | /home/rishu/Projects/3D slicer/MRI Brain |
109 | 3dslicer_endtoend_109 | Open MRI project for Rishu, set layout to 1×2, and ensure axial and sagittal slices are visible, run bias correction to remove shading artifacts, normalize intensity levels across slices, apply smoothing to the segmentation mask, convert segmentation to 3D model for visualization, compute ROI statistics for mean and st... | Import_Rishu_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI... | {
"id": "3dslicer_endtoend_109",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Open MRI project for Rishu, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, run b... | 21 | 21 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/M... | /home/rishu/Projects/3D slicer/MRI Brain |
110 | 3dslicer_endtoend_110 | Open MRI project for Rishu, set layout to 1×2, and ensure axial and sagittal slices are visible, invert grayscale to highlight low-intensity structures, apply histogram equalization for better contrast, use the Paint tool to refine segmentation boundaries, create a new segmentation for white and gray matter regions, cr... | Import_Rishu_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_A... | {
"id": "3dslicer_endtoend_110",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Open MRI project for Rishu, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, inver... | 17 | 17 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI... | /home/rishu/Projects/3D slicer/MRI Brain |
111 | 3dslicer_endtoend_111 | Open MRI project for Rishu, set layout to 1×2, and ensure axial and sagittal slices are visible, apply Gaussian smoothing to denoise the volume, normalize intensity levels across slices, create a new segmentation for white and gray matter regions, create a new segmentation for white and gray matter regions, place two f... | Import_Rishu_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_26_Select_Fiducial.png → BMRI_26_Fiducials_ACPC_Placed.png → BMRI_27_... | {
"id": "3dslicer_endtoend_111",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Open MRI project for Rishu, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, apply... | 15 | 15 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/M... | /home/rishu/Projects/3D slicer/MRI Brain |
112 | 3dslicer_endtoend_112 | Open MRI project for Rishu, set layout to 1×2, and ensure axial and sagittal slices are visible, invert grayscale to highlight low-intensity structures, apply Gaussian smoothing to denoise the volume, convert segmentation to 3D model for visualization, convert segmentation to 3D model for visualization, draw a circular... | Import_Rishu_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_19_Select_... | {
"id": "3dslicer_endtoend_112",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Open MRI project for Rishu, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, inver... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/M... | /home/rishu/Projects/3D slicer/MRI Brain |
113 | 3dslicer_endtoend_113 | Open MRI project for Rishu, set layout to 1×2, and ensure axial and sagittal slices are visible, run bias correction to remove shading artifacts, run bias correction to remove shading artifacts, convert segmentation to 3D model for visualization, threshold ventricles in the segmentation editor, create a rectangular ROI... | Import_Rishu_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_23_Segmentation_To_Model_Conversion.png → ... | {
"id": "3dslicer_endtoend_113",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Open MRI project for Rishu, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, run b... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/M... | /home/rishu/Projects/3D slicer/MRI Brain |
114 | 3dslicer_endtoend_114 | Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram equalization for better contrast, apply histogram equalization for better contrast, use the Paint tool to refine segmentation boundaries, apply smoothing to the segmentation mask, add annotation label to highlight ... | Import_Rishu_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_12_Select_Volume_Rendering_Tool.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_36_Expor... | {
"id": "3dslicer_endtoend_114",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram e... | 16 | 16 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI ... | /home/rishu/Projects/3D slicer/MRI Brain |
115 | 3dslicer_endtoend_115 | Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, invert grayscale to highlight low-intensity structures, apply histogram equalization for better contrast, threshold ventricles in the segmentation editor, threshold ventricles in the segmentation editor, add annotation label to ... | Import_Rishu_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_42_Scr... | {
"id": "3dslicer_endtoend_115",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, invert grayscal... | 17 | 17 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3... | /home/rishu/Projects/3D slicer/MRI Brain |
116 | 3dslicer_endtoend_116 | Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, normalize intensity levels across slices, run bias correction to remove shading artifacts, threshold ventricles in the segmentation editor, use the Paint tool to refine segmentation boundaries, draw a circular ROI over the left ... | Import_Rishu_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmentation_Smoothing_Apply_Tool... | {
"id": "3dslicer_endtoend_116",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, normalize inten... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Pr... | /home/rishu/Projects/3D slicer/MRI Brain |
117 | 3dslicer_endtoend_117 | Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, normalize intensity levels across slices, normalize intensity levels across slices, apply smoothing to the segmentation mask, create a new segmentation for white and gray matter regions, draw a circular ROI over the left ventricle... | Import_Rishu_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_Circl... | {
"id": "3dslicer_endtoend_117",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, normalize intensi... | 15 | 15 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI... | /home/rishu/Projects/3D slicer/MRI Brain |
118 | 3dslicer_endtoend_118 | Open MRI project for Rishu, set layout to 1×2, and ensure axial and sagittal slices are visible, normalize intensity levels across slices, apply histogram equalization for better contrast, apply smoothing to the segmentation mask, use the Paint tool to refine segmentation boundaries, compute ROI statistics for mean and... | Import_Rishu_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_20_Select_Apply.png → BMRI_20_ROI_Statistics_Table.p... | {
"id": "3dslicer_endtoend_118",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Open MRI project for Rishu, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, norma... | 19 | 19 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MR... | /home/rishu/Projects/3D slicer/MRI Brain |
119 | 3dslicer_endtoend_119 | Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, apply Gaussian smoothing to denoise the volume, invert grayscale to highlight low-intensity structures, use the Paint tool to refine segmentation boundaries, threshold ventricles in the segmentation editor, create a rectangular RO... | Import_Rishu_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmenta... | {
"id": "3dslicer_endtoend_119",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, apply Gaussian sm... | 19 | 19 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MR... | /home/rishu/Projects/3D slicer/MRI Brain |
120 | 3dslicer_endtoend_120 | Open MRI project for Rishu, set layout to 1×2, and ensure axial and sagittal slices are visible, run bias correction to remove shading artifacts, invert grayscale to highlight low-intensity structures, threshold ventricles in the segmentation editor, use the Paint tool to refine segmentation boundaries, draw a circular... | Import_Rishu_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI... | {
"id": "3dslicer_endtoend_120",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Open MRI project for Rishu, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, run b... | 19 | 19 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/M... | /home/rishu/Projects/3D slicer/MRI Brain |
121 | 3dslicer_endtoend_121 | Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, run bias correction to remove shading artifacts, apply Gaussian smoothing to denoise the volume, use the Paint tool to refine segmentation boundaries, apply smoothing to the segmentation mask, add annotation label to highlight R... | Import_Rishu_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_12_Select_Volume_Rendering_Tool... | {
"id": "3dslicer_endtoend_121",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, run bias correc... | 16 | 16 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Pr... | /home/rishu/Projects/3D slicer/MRI Brain |
122 | 3dslicer_endtoend_122 | Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram equalization for better contrast, run bias correction to remove shading artifacts, threshold ventricles in the segmentation editor, create a new segmentation for white and gray matter regions, place two fiducial po... | Import_Rishu_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_04_A... | {
"id": "3dslicer_endtoend_122",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram e... | 19 | 19 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MR... | /home/rishu/Projects/3D slicer/MRI Brain |
123 | 3dslicer_endtoend_123 | Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, normalize intensity levels across slices, apply Gaussian smoothing to denoise the volume, create a new segmentation for white and gray matter regions, convert segmentation to 3D model for visualization, add annotation label to hig... | Import_Rishu_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_Surface... | {
"id": "3dslicer_endtoend_123",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, normalize intensi... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MR... | /home/rishu/Projects/3D slicer/MRI Brain |
124 | 3dslicer_endtoend_124 | Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, apply Gaussian smoothing to denoise the volume, apply histogram equalization for better contrast, use the Paint tool to refine segmentation boundaries, threshold ventricles in the segmentation editor, compute ROI statistics for ... | Import_Rishu_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_20_Select_Apply.png → BMRI_20_ROI_Statist... | {
"id": "3dslicer_endtoend_124",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, apply Gaussian ... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D sli... | /home/rishu/Projects/3D slicer/MRI Brain |
125 | 3dslicer_endtoend_125 | Open MRI project for Rishu, set layout to 1×2, and ensure axial and sagittal slices are visible, apply Gaussian smoothing to denoise the volume, invert grayscale to highlight low-intensity structures, create a new segmentation for white and gray matter regions, convert segmentation to 3D model for visualization, add an... | Import_Rishu_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_23_Segmentation_To_Model_... | {
"id": "3dslicer_endtoend_125",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Open MRI project for Rishu, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, apply... | 20 | 20 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/M... | /home/rishu/Projects/3D slicer/MRI Brain |
126 | 3dslicer_endtoend_126 | Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, run bias correction to remove shading artifacts, run bias correction to remove shading artifacts, use the Paint tool to refine segmentation boundaries, apply smoothing to the segmentation mask, compute ROI statistics for mean an... | Import_Rishu_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_20_Select_Apply.png → BMRI_20_ROI_Statistics_Table.png → BMRI_21_Intensi... | {
"id": "3dslicer_endtoend_126",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, run bias correc... | 20 | 20 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Pr... | /home/rishu/Projects/3D slicer/MRI Brain |
127 | 3dslicer_endtoend_127 | Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram equalization for better contrast, normalize intensity levels across slices, convert segmentation to 3D model for visualization, threshold ventricles in the segmentation editor, draw a circular ROI over the left ven... | Import_Rishu_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3... | {
"id": "3dslicer_endtoend_127",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram e... | 19 | 19 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI... | /home/rishu/Projects/3D slicer/MRI Brain |
128 | 3dslicer_endtoend_128 | Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, apply Gaussian smoothing to denoise the volume, invert grayscale to highlight low-intensity structures, create a new segmentation for white and gray matter regions, apply smoothing to the segmentation mask, place two fiducial poin... | Import_Rishu_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_... | {
"id": "3dslicer_endtoend_128",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, apply Gaussian sm... | 16 | 16 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MR... | /home/rishu/Projects/3D slicer/MRI Brain |
129 | 3dslicer_endtoend_129 | Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, invert grayscale to highlight low-intensity structures, apply Gaussian smoothing to denoise the volume, apply smoothing to the segmentation mask, create a new segmentation for white and gray matter regions, add annotation label to... | Import_Rishu_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_... | {
"id": "3dslicer_endtoend_129",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, invert grayscale ... | 15 | 15 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MR... | /home/rishu/Projects/3D slicer/MRI Brain |
130 | 3dslicer_endtoend_130 | Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram equalization for better contrast, apply histogram equalization for better contrast, convert segmentation to 3D model for visualization, convert segmentation to 3D model for visualization, add annotation label to hi... | Import_Rishu_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_12_Select_Volume_Rendering_Tool.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_42_ScreenCap... | {
"id": "3dslicer_endtoend_130",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram e... | 15 | 15 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI ... | /home/rishu/Projects/3D slicer/MRI Brain |
131 | 3dslicer_endtoend_131 | Open MRI project for Rishu, set layout to 1×2, and ensure axial and sagittal slices are visible, invert grayscale to highlight low-intensity structures, invert grayscale to highlight low-intensity structures, threshold ventricles in the segmentation editor, create a new segmentation for white and gray matter regions, a... | Import_Rishu_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmenta... | {
"id": "3dslicer_endtoend_131",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Open MRI project for Rishu, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, inver... | 17 | 17 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D sli... | /home/rishu/Projects/3D slicer/MRI Brain |
132 | 3dslicer_endtoend_132 | Open MRI project for Rishu, set layout to 1×2, and ensure axial and sagittal slices are visible, apply histogram equalization for better contrast, run bias correction to remove shading artifacts, convert segmentation to 3D model for visualization, convert segmentation to 3D model for visualization, compute ROI statisti... | Import_Rishu_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_20_... | {
"id": "3dslicer_endtoend_132",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Open MRI project for Rishu, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, apply... | 17 | 17 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/M... | /home/rishu/Projects/3D slicer/MRI Brain |
133 | 3dslicer_endtoend_133 | Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, apply Gaussian smoothing to denoise the volume, apply histogram equalization for better contrast, convert segmentation to 3D model for visualization, create a new segmentation for white and gray matter regions, place two fiducia... | Import_Rishu_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_26_Select_Fiduc... | {
"id": "3dslicer_endtoend_133",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, apply Gaussian ... | 15 | 15 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D sli... | /home/rishu/Projects/3D slicer/MRI Brain |
134 | 3dslicer_endtoend_134 | Open MRI project for Rishu, set layout to 1×2, and ensure axial and sagittal slices are visible, normalize intensity levels across slices, run bias correction to remove shading artifacts, apply smoothing to the segmentation mask, apply smoothing to the segmentation mask, compute ROI statistics for mean and standard dev... | Import_Rishu_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_20_Select_Apply.png → BMRI_20_ROI_Statistics_T... | {
"id": "3dslicer_endtoend_134",
"initial_state": {
"application": "3D Slicer",
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1920,
1080
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"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Open MRI project for Rishu, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, norma... | 19 | 19 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/M... | /home/rishu/Projects/3D slicer/MRI Brain |
135 | 3dslicer_endtoend_135 | Open MRI project for Rishu, set layout to 1×2, and ensure axial and sagittal slices are visible, normalize intensity levels across slices, apply histogram equalization for better contrast, use the Paint tool to refine segmentation boundaries, apply smoothing to the segmentation mask, compute ROI statistics for mean and... | Import_Rishu_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_20_Select_Apply.png → BMRI_20_ROI_Statistics_Table.p... | {
"id": "3dslicer_endtoend_135",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Open MRI project for Rishu, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, norma... | 16 | 16 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MR... | /home/rishu/Projects/3D slicer/MRI Brain |
136 | 3dslicer_endtoend_136 | Open MRI project for Rishu, set layout to 1×2, and ensure axial and sagittal slices are visible, apply histogram equalization for better contrast, apply histogram equalization for better contrast, apply smoothing to the segmentation mask, convert segmentation to 3D model for visualization, add annotation label to highl... | Import_Rishu_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_37_Layout_FourUp_View.png → BMRI_25_Select_File_Too... | {
"id": "3dslicer_endtoend_136",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Open MRI project for Rishu, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, apply... | 16 | 16 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI... | /home/rishu/Projects/3D slicer/MRI Brain |
137 | 3dslicer_endtoend_137 | Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, apply Gaussian smoothing to denoise the volume, apply Gaussian smoothing to denoise the volume, threshold ventricles in the segmentation editor, apply smoothing to the segmentation mask, compute ROI statistics for mean and stand... | Import_Rishu_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_20_Select_Apply.png → BMRI_20_ROI_Statistics_Table.png → BMRI_21_Intensity_Histogra... | {
"id": "3dslicer_endtoend_137",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, apply Gaussian ... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Threshold_Ventricles_Segmentation.png|/home/rishu/Projec... | /home/rishu/Projects/3D slicer/MRI Brain |
138 | 3dslicer_endtoend_138 | Open MRI project for Rishu, set layout to 1×2, and ensure axial and sagittal slices are visible, apply histogram equalization for better contrast, normalize intensity levels across slices, apply smoothing to the segmentation mask, convert segmentation to 3D model for visualization, create a rectangular ROI to isolate t... | Import_Rishu_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_46_SaveScen... | {
"id": "3dslicer_endtoend_138",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Open MRI project for Rishu, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, apply... | 16 | 16 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MR... | /home/rishu/Projects/3D slicer/MRI Brain |
139 | 3dslicer_endtoend_139 | Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, run bias correction to remove shading artifacts, run bias correction to remove shading artifacts, convert segmentation to 3D model for visualization, convert segmentation to 3D model for visualization, draw a circular ROI over the... | Import_Rishu_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI... | {
"id": "3dslicer_endtoend_139",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, run bias correcti... | 16 | 16 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MR... | /home/rishu/Projects/3D slicer/MRI Brain |
140 | 3dslicer_endtoend_140 | Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, normalize intensity levels across slices, invert grayscale to highlight low-intensity structures, use the Paint tool to refine segmentation boundaries, threshold ventricles in the segmentation editor, place two fiducial points (AC... | Import_Rishu_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmentat... | {
"id": "3dslicer_endtoend_140",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, normalize intensi... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI... | /home/rishu/Projects/3D slicer/MRI Brain |
141 | 3dslicer_endtoend_141 | Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, normalize intensity levels across slices, apply Gaussian smoothing to denoise the volume, apply smoothing to the segmentation mask, create a new segmentation for white and gray matter regions, compute ROI statistics for mean and s... | Import_Rishu_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_20_Select_Apply.png → BMR... | {
"id": "3dslicer_endtoend_141",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, normalize intensi... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MR... | /home/rishu/Projects/3D slicer/MRI Brain |
142 | 3dslicer_endtoend_142 | Open MRI project for Rishu, set layout to 1×2, and ensure axial and sagittal slices are visible, run bias correction to remove shading artifacts, invert grayscale to highlight low-intensity structures, apply smoothing to the segmentation mask, convert segmentation to 3D model for visualization, create a rectangular ROI... | Import_Rishu_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_23... | {
"id": "3dslicer_endtoend_142",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Open MRI project for Rishu, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, run b... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/M... | /home/rishu/Projects/3D slicer/MRI Brain |
143 | 3dslicer_endtoend_143 | Open MRI project for Rishu, set layout to 1×2, and ensure axial and sagittal slices are visible, apply Gaussian smoothing to denoise the volume, invert grayscale to highlight low-intensity structures, create a new segmentation for white and gray matter regions, apply smoothing to the segmentation mask, compute ROI stat... | Import_Rishu_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing... | {
"id": "3dslicer_endtoend_143",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Open MRI project for Rishu, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, apply... | 20 | 20 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/M... | /home/rishu/Projects/3D slicer/MRI Brain |
144 | 3dslicer_endtoend_144 | Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, apply Gaussian smoothing to denoise the volume, invert grayscale to highlight low-intensity structures, use the Paint tool to refine segmentation boundaries, create a new segmentation for white and gray matter regions, add annotat... | Import_Rishu_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_... | {
"id": "3dslicer_endtoend_144",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, apply Gaussian sm... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MR... | /home/rishu/Projects/3D slicer/MRI Brain |
145 | 3dslicer_endtoend_145 | Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, normalize intensity levels across slices, apply histogram equalization for better contrast, create a new segmentation for white and gray matter regions, apply smoothing to the segmentation mask, place two fiducial points (AC and... | Import_Rishu_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_26_Select_Fiducial.png → BMRI_26_Fiducials_ACPC_Placed.png →... | {
"id": "3dslicer_endtoend_145",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, normalize inten... | 13 | 13 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slic... | /home/rishu/Projects/3D slicer/MRI Brain |
146 | 3dslicer_endtoend_146 | Open MRI project for Rishu, set layout to 1×2, and ensure axial and sagittal slices are visible, apply histogram equalization for better contrast, apply Gaussian smoothing to denoise the volume, convert segmentation to 3D model for visualization, create a new segmentation for white and gray matter regions, create a rec... | Import_Rishu_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_Surface... | {
"id": "3dslicer_endtoend_146",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Open MRI project for Rishu, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, apply... | 17 | 17 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/M... | /home/rishu/Projects/3D slicer/MRI Brain |
147 | 3dslicer_endtoend_147 | Open MRI project for Rishu, set layout to 1×2, and ensure axial and sagittal slices are visible, invert grayscale to highlight low-intensity structures, normalize intensity levels across slices, threshold ventricles in the segmentation editor, apply smoothing to the segmentation mask, compute ROI statistics for mean an... | Import_Rishu_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmenta... | {
"id": "3dslicer_endtoend_147",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Open MRI project for Rishu, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, inver... | 22 | 22 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MR... | /home/rishu/Projects/3D slicer/MRI Brain |
148 | 3dslicer_endtoend_148 | Open MRI project for Rishu, set layout to 1×2, and ensure axial and sagittal slices are visible, invert grayscale to highlight low-intensity structures, normalize intensity levels across slices, use the Paint tool to refine segmentation boundaries, apply smoothing to the segmentation mask, place two fiducial points (AC... | Import_Rishu_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_26_Sele... | {
"id": "3dslicer_endtoend_148",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Open MRI project for Rishu, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, inver... | 17 | 17 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MR... | /home/rishu/Projects/3D slicer/MRI Brain |
149 | 3dslicer_endtoend_149 | Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, invert grayscale to highlight low-intensity structures, invert grayscale to highlight low-intensity structures, use the Paint tool to refine segmentation boundaries, threshold ventricles in the segmentation editor, create a rect... | Import_Rishu_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_38_MPR_Slice_Intersections_On.png → B... | {
"id": "3dslicer_endtoend_149",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, invert grayscal... | 15 | 15 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Scroll_To_Inverted_Gray.png|/home/rishu/Projects/3D... | /home/rishu/Projects/3D slicer/MRI Brain |
150 | 3dslicer_endtoend_150 | Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, run bias correction to remove shading artifacts, normalize intensity levels across slices, convert segmentation to 3D model for visualization, create a new segmentation for white and gray matter regions, place two fiducial point... | Import_Rishu_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_M... | {
"id": "3dslicer_endtoend_150",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, run bias correc... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Pr... | /home/rishu/Projects/3D slicer/MRI Brain |
151 | 3dslicer_endtoend_151 | Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, normalize intensity levels across slices, run bias correction to remove shading artifacts, apply smoothing to the segmentation mask, threshold ventricles in the segmentation editor, draw a circular ROI over the left ventricle an... | Import_Rishu_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmentation_Smoothing_Applied.pn... | {
"id": "3dslicer_endtoend_151",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, normalize inten... | 17 | 17 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Pr... | /home/rishu/Projects/3D slicer/MRI Brain |
152 | 3dslicer_endtoend_152 | Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, normalize intensity levels across slices, run bias correction to remove shading artifacts, convert segmentation to 3D model for visualization, apply smoothing to the segmentation mask, place two fiducial points (AC and PC) and com... | Import_Rishu_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_... | {
"id": "3dslicer_endtoend_152",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, normalize intensi... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MR... | /home/rishu/Projects/3D slicer/MRI Brain |
153 | 3dslicer_endtoend_153 | Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, normalize intensity levels across slices, apply Gaussian smoothing to denoise the volume, apply smoothing to the segmentation mask, apply smoothing to the segmentation mask, create a rectangular ROI to isolate temporal lobe stru... | Import_Rishu_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_12_Select_Volume_Rendering_Tool.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_36_Export_Labelmap_Dialog.png → BMRI_06_Export_... | {
"id": "3dslicer_endtoend_153",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, normalize inten... | 15 | 15 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D sl... | /home/rishu/Projects/3D slicer/MRI Brain |
154 | 3dslicer_endtoend_154 | Open MRI project for Rishu, set layout to 1×2, and ensure axial and sagittal slices are visible, normalize intensity levels across slices, run bias correction to remove shading artifacts, convert segmentation to 3D model for visualization, create a new segmentation for white and gray matter regions, place two fiducial ... | Import_Rishu_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_23_Segmentation_T... | {
"id": "3dslicer_endtoend_154",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Open MRI project for Rishu, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, norma... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/M... | /home/rishu/Projects/3D slicer/MRI Brain |
155 | 3dslicer_endtoend_155 | Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, run bias correction to remove shading artifacts, normalize intensity levels across slices, use the Paint tool to refine segmentation boundaries, threshold ventricles in the segmentation editor, add annotation label to highlight RO... | Import_Rishu_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_... | {
"id": "3dslicer_endtoend_155",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, run bias correcti... | 19 | 19 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MR... | /home/rishu/Projects/3D slicer/MRI Brain |
156 | 3dslicer_endtoend_156 | Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, run bias correction to remove shading artifacts, apply histogram equalization for better contrast, use the Paint tool to refine segmentation boundaries, apply smoothing to the segmentation mask, draw a circular ROI over the left... | Import_Rishu_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_19_Select_Circle_ROI_Tool.png → B... | {
"id": "3dslicer_endtoend_156",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, run bias correc... | 17 | 17 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Pr... | /home/rishu/Projects/3D slicer/MRI Brain |
157 | 3dslicer_endtoend_157 | Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, run bias correction to remove shading artifacts, run bias correction to remove shading artifacts, use the Paint tool to refine segmentation boundaries, apply smoothing to the segmentation mask, add annotation label to highlight RO... | Import_Rishu_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_38_MPR_Slice_Intersections_On.png → BMR... | {
"id": "3dslicer_endtoend_157",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, run bias correcti... | 15 | 15 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MR... | /home/rishu/Projects/3D slicer/MRI Brain |
158 | 3dslicer_endtoend_158 | Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, normalize intensity levels across slices, apply Gaussian smoothing to denoise the volume, convert segmentation to 3D model for visualization, apply smoothing to the segmentation mask, create a rectangular ROI to isolate temporal l... | Import_Rishu_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_25_Select_... | {
"id": "3dslicer_endtoend_158",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, normalize intensi... | 17 | 17 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MR... | /home/rishu/Projects/3D slicer/MRI Brain |
159 | 3dslicer_endtoend_159 | Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram equalization for better contrast, normalize intensity levels across slices, create a new segmentation for white and gray matter regions, convert segmentation to 3D model for visualization, create a rectangular ROI ... | Import_Rishu_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVi... | {
"id": "3dslicer_endtoend_159",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram e... | 14 | 14 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI... | /home/rishu/Projects/3D slicer/MRI Brain |
160 | 3dslicer_endtoend_160 | Open MRI project for Rishu, set layout to 1×2, and ensure axial and sagittal slices are visible, apply histogram equalization for better contrast, apply Gaussian smoothing to denoise the volume, apply smoothing to the segmentation mask, use the Paint tool to refine segmentation boundaries, place two fiducial points (AC... | Import_Rishu_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_26_Select_Fiducial.png → BMRI_26_Fiducials_ACPC_Pla... | {
"id": "3dslicer_endtoend_160",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Open MRI project for Rishu, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, apply... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/M... | /home/rishu/Projects/3D slicer/MRI Brain |
161 | 3dslicer_endtoend_161 | Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, apply Gaussian smoothing to denoise the volume, apply Gaussian smoothing to denoise the volume, threshold ventricles in the segmentation editor, apply smoothing to the segmentation mask, create a rectangular ROI to isolate tempo... | Import_Rishu_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_42_ScreenCapture_Module.png → BMRI_38_MPR_S... | {
"id": "3dslicer_endtoend_161",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, apply Gaussian ... | 15 | 15 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Threshold_Ventricles_Segmentation.png|/home/rishu/Projec... | /home/rishu/Projects/3D slicer/MRI Brain |
162 | 3dslicer_endtoend_162 | Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, invert grayscale to highlight low-intensity structures, apply histogram equalization for better contrast, apply smoothing to the segmentation mask, create a new segmentation for white and gray matter regions, add annotation labe... | Import_Rishu_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_38_MPR_Slice_Int... | {
"id": "3dslicer_endtoend_162",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, invert grayscal... | 13 | 13 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3... | /home/rishu/Projects/3D slicer/MRI Brain |
163 | 3dslicer_endtoend_163 | Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram equalization for better contrast, run bias correction to remove shading artifacts, apply smoothing to the segmentation mask, create a new segmentation for white and gray matter regions, place two fiducial points (A... | Import_Rishu_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smo... | {
"id": "3dslicer_endtoend_163",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram e... | 17 | 17 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MR... | /home/rishu/Projects/3D slicer/MRI Brain |
164 | 3dslicer_endtoend_164 | Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, run bias correction to remove shading artifacts, apply Gaussian smoothing to denoise the volume, threshold ventricles in the segmentation editor, apply smoothing to the segmentation mask, compute ROI statistics for mean and standa... | Import_Rishu_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35... | {
"id": "3dslicer_endtoend_164",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, run bias correcti... | 21 | 21 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MR... | /home/rishu/Projects/3D slicer/MRI Brain |
165 | 3dslicer_endtoend_165 | Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, apply histogram equalization for better contrast, invert grayscale to highlight low-intensity structures, apply smoothing to the segmentation mask, create a new segmentation for white and gray matter regions, draw a circular ROI... | Import_Rishu_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_19_Select_Circle... | {
"id": "3dslicer_endtoend_165",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, apply histogram... | 14 | 14 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3... | /home/rishu/Projects/3D slicer/MRI Brain |
166 | 3dslicer_endtoend_166 | Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, apply Gaussian smoothing to denoise the volume, apply histogram equalization for better contrast, apply smoothing to the segmentation mask, use the Paint tool to refine segmentation boundaries, place two fiducial points (AC and PC... | Import_Rishu_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_26_Select_Fiducial.png → BMRI_26_Fiducials_ACPC_Plac... | {
"id": "3dslicer_endtoend_166",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, apply Gaussian sm... | 16 | 16 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MR... | /home/rishu/Projects/3D slicer/MRI Brain |
167 | 3dslicer_endtoend_167 | Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram equalization for better contrast, normalize intensity levels across slices, use the Paint tool to refine segmentation boundaries, create a new segmentation for white and gray matter regions, place two fiducial poin... | Import_Rishu_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_26_Select_Fiducial.png →... | {
"id": "3dslicer_endtoend_167",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram e... | 16 | 16 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI... | /home/rishu/Projects/3D slicer/MRI Brain |
168 | 3dslicer_endtoend_168 | Open MRI project for Rishu, set layout to 1×2, and ensure axial and sagittal slices are visible, apply Gaussian smoothing to denoise the volume, normalize intensity levels across slices, convert segmentation to 3D model for visualization, create a new segmentation for white and gray matter regions, add annotation label... | Import_Rishu_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_Surfac... | {
"id": "3dslicer_endtoend_168",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Open MRI project for Rishu, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, apply... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/M... | /home/rishu/Projects/3D slicer/MRI Brain |
169 | 3dslicer_endtoend_169 | Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, invert grayscale to highlight low-intensity structures, invert grayscale to highlight low-intensity structures, use the Paint tool to refine segmentation boundaries, threshold ventricles in the segmentation editor, add annotatio... | Import_Rishu_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_12_Select_Volume_Rendering_Tool.png →... | {
"id": "3dslicer_endtoend_169",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, invert grayscal... | 17 | 17 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Scroll_To_Inverted_Gray.png|/home/rishu/Projects/3D... | /home/rishu/Projects/3D slicer/MRI Brain |
170 | 3dslicer_endtoend_170 | Open MRI project for Rishu, set layout to 1×2, and ensure axial and sagittal slices are visible, invert grayscale to highlight low-intensity structures, apply histogram equalization for better contrast, convert segmentation to 3D model for visualization, apply smoothing to the segmentation mask, compute ROI statistics ... | Import_Rishu_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_... | {
"id": "3dslicer_endtoend_170",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Open MRI project for Rishu, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, inver... | 20 | 20 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI... | /home/rishu/Projects/3D slicer/MRI Brain |
171 | 3dslicer_endtoend_171 | Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, invert grayscale to highlight low-intensity structures, run bias correction to remove shading artifacts, apply smoothing to the segmentation mask, convert segmentation to 3D model for visualization, compute ROI statistics for mean... | Import_Rishu_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_23_... | {
"id": "3dslicer_endtoend_171",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, invert grayscale ... | 22 | 22 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MR... | /home/rishu/Projects/3D slicer/MRI Brain |
172 | 3dslicer_endtoend_172 | Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, apply Gaussian smoothing to denoise the volume, run bias correction to remove shading artifacts, use the Paint tool to refine segmentation boundaries, use the Paint tool to refine segmentation boundaries, compute ROI statistics fo... | Import_Rishu_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_20_Select_Apply.png → BMRI_20_ROI_Statistic... | {
"id": "3dslicer_endtoend_172",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, apply Gaussian sm... | 20 | 20 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MR... | /home/rishu/Projects/3D slicer/MRI Brain |
173 | 3dslicer_endtoend_173 | Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram equalization for better contrast, run bias correction to remove shading artifacts, convert segmentation to 3D model for visualization, threshold ventricles in the segmentation editor, create a rectangular ROI to is... | Import_Rishu_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_23_S... | {
"id": "3dslicer_endtoend_173",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram e... | 20 | 20 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MR... | /home/rishu/Projects/3D slicer/MRI Brain |
174 | 3dslicer_endtoend_174 | Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram equalization for better contrast, invert grayscale to highlight low-intensity structures, apply smoothing to the segmentation mask, create a new segmentation for white and gray matter regions, place two fiducial po... | Import_Rishu_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_Ap... | {
"id": "3dslicer_endtoend_174",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram e... | 16 | 16 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI ... | /home/rishu/Projects/3D slicer/MRI Brain |
175 | 3dslicer_endtoend_175 | Open MRI project for Rishu, set layout to 1×2, and ensure axial and sagittal slices are visible, apply histogram equalization for better contrast, apply histogram equalization for better contrast, create a new segmentation for white and gray matter regions, apply smoothing to the segmentation mask, create a rectangular... | Import_Rishu_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_12_Select_Volume_Rendering_Tool.png → BMRI_12_VolumeRendering_Modu... | {
"id": "3dslicer_endtoend_175",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Open MRI project for Rishu, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, apply... | 15 | 15 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI... | /home/rishu/Projects/3D slicer/MRI Brain |
176 | 3dslicer_endtoend_176 | Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, run bias correction to remove shading artifacts, apply histogram equalization for better contrast, convert segmentation to 3D model for visualization, convert segmentation to 3D model for visualization, place two fiducial points (... | Import_Rishu_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_26_S... | {
"id": "3dslicer_endtoend_176",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, run bias correcti... | 17 | 17 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MR... | /home/rishu/Projects/3D slicer/MRI Brain |
177 | 3dslicer_endtoend_177 | Open MRI project for Rishu, set layout to 1×2, and ensure axial and sagittal slices are visible, invert grayscale to highlight low-intensity structures, run bias correction to remove shading artifacts, use the Paint tool to refine segmentation boundaries, create a new segmentation for white and gray matter regions, com... | Import_Rishu_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segm... | {
"id": "3dslicer_endtoend_177",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Open MRI project for Rishu, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, inver... | 20 | 20 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/M... | /home/rishu/Projects/3D slicer/MRI Brain |
178 | 3dslicer_endtoend_178 | Open MRI project for Rishu, set layout to 1×2, and ensure axial and sagittal slices are visible, invert grayscale to highlight low-intensity structures, invert grayscale to highlight low-intensity structures, use the Paint tool to refine segmentation boundaries, use the Paint tool to refine segmentation boundaries, cre... | Import_Rishu_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_25_Select_File_Tool.png → BMRI_25_Export_STL_Confirmation.png → BMRI_22_Change_Opacity_And_S... | {
"id": "3dslicer_endtoend_178",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Open MRI project for Rishu, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, inver... | 16 | 16 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D sli... | /home/rishu/Projects/3D slicer/MRI Brain |
179 | 3dslicer_endtoend_179 | Open MRI project for Rishu, set layout to 1×2, and ensure axial and sagittal slices are visible, apply histogram equalization for better contrast, apply Gaussian smoothing to denoise the volume, apply smoothing to the segmentation mask, apply smoothing to the segmentation mask, add annotation label to highlight ROI reg... | Import_Rishu_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_37_Layout_FourUp_View.png → BMRI_46_SaveScene_Dialog.png → BMRI_38_MPR_Slice_Intersections_On.png →... | {
"id": "3dslicer_endtoend_179",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Open MRI project for Rishu, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, apply... | 14 | 14 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/M... | /home/rishu/Projects/3D slicer/MRI Brain |
180 | 3dslicer_endtoend_180 | Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, normalize intensity levels across slices, run bias correction to remove shading artifacts, threshold ventricles in the segmentation editor, create a new segmentation for white and gray matter regions, draw a circular ROI over the ... | Import_Rishu_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_04_... | {
"id": "3dslicer_endtoend_180",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, normalize intensi... | 16 | 16 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MR... | /home/rishu/Projects/3D slicer/MRI Brain |
181 | 3dslicer_endtoend_181 | Open MRI project for Rishu, set layout to 1×2, and ensure axial and sagittal slices are visible, invert grayscale to highlight low-intensity structures, invert grayscale to highlight low-intensity structures, apply smoothing to the segmentation mask, create a new segmentation for white and gray matter regions, draw a c... | Import_Rishu_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_19_Select_Circle_ROI_... | {
"id": "3dslicer_endtoend_181",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Open MRI project for Rishu, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, inver... | 15 | 15 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D sli... | /home/rishu/Projects/3D slicer/MRI Brain |
182 | 3dslicer_endtoend_182 | Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, invert grayscale to highlight low-intensity structures, invert grayscale to highlight low-intensity structures, apply smoothing to the segmentation mask, convert segmentation to 3D model for visualization, create a rectangular ROI... | Import_Rishu_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_38_MPR_... | {
"id": "3dslicer_endtoend_182",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, invert grayscale ... | 16 | 16 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D slic... | /home/rishu/Projects/3D slicer/MRI Brain |
183 | 3dslicer_endtoend_183 | Open MRI project for Rishu, set layout to 1×2, and ensure axial and sagittal slices are visible, apply histogram equalization for better contrast, normalize intensity levels across slices, convert segmentation to 3D model for visualization, convert segmentation to 3D model for visualization, add annotation label to hig... | Import_Rishu_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_42_ScreenCapture... | {
"id": "3dslicer_endtoend_183",
"initial_state": {
"application": "3D Slicer",
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1920,
1080
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"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Open MRI project for Rishu, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, apply... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MR... | /home/rishu/Projects/3D slicer/MRI Brain |
184 | 3dslicer_endtoend_184 | Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, apply histogram equalization for better contrast, apply Gaussian smoothing to denoise the volume, apply smoothing to the segmentation mask, create a new segmentation for white and gray matter regions, draw a circular ROI over th... | Import_Rishu_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricl... | {
"id": "3dslicer_endtoend_184",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
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"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, apply histogram... | 15 | 15 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D sli... | /home/rishu/Projects/3D slicer/MRI Brain |
185 | 3dslicer_endtoend_185 | Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, invert grayscale to highlight low-intensity structures, invert grayscale to highlight low-intensity structures, threshold ventricles in the segmentation editor, apply smoothing to the segmentation mask, compute ROI statistics fo... | Import_Rishu_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_20_Select_Apply.png → BMRI_20_ROI_Statis... | {
"id": "3dslicer_endtoend_185",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, invert grayscal... | 20 | 20 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Scroll_To_Inverted_Gray.png|/home/rishu/Projects/3D... | /home/rishu/Projects/3D slicer/MRI Brain |
186 | 3dslicer_endtoend_186 | Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, apply Gaussian smoothing to denoise the volume, run bias correction to remove shading artifacts, use the Paint tool to refine segmentation boundaries, create a new segmentation for white and gray matter regions, draw a circular RO... | Import_Rishu_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_S... | {
"id": "3dslicer_endtoend_186",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, apply Gaussian sm... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MR... | /home/rishu/Projects/3D slicer/MRI Brain |
187 | 3dslicer_endtoend_187 | Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, apply Gaussian smoothing to denoise the volume, apply histogram equalization for better contrast, apply smoothing to the segmentation mask, threshold ventricles in the segmentation editor, place two fiducial points (AC and PC) and... | Import_Rishu_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_26_Select_F... | {
"id": "3dslicer_endtoend_187",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, apply Gaussian sm... | 16 | 16 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MR... | /home/rishu/Projects/3D slicer/MRI Brain |
188 | 3dslicer_endtoend_188 | Open MRI project for Rishu, set layout to 1×2, and ensure axial and sagittal slices are visible, run bias correction to remove shading artifacts, apply Gaussian smoothing to denoise the volume, convert segmentation to 3D model for visualization, create a new segmentation for white and gray matter regions, create a rect... | Import_Rishu_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_23_Segmentation_... | {
"id": "3dslicer_endtoend_188",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Open MRI project for Rishu, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, run b... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/M... | /home/rishu/Projects/3D slicer/MRI Brain |
189 | 3dslicer_endtoend_189 | Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, apply histogram equalization for better contrast, normalize intensity levels across slices, use the Paint tool to refine segmentation boundaries, convert segmentation to 3D model for visualization, draw a circular ROI over the l... | Import_Rishu_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_RO... | {
"id": "3dslicer_endtoend_189",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, apply histogram... | 14 | 14 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slic... | /home/rishu/Projects/3D slicer/MRI Brain |
190 | 3dslicer_endtoend_190 | Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, normalize intensity levels across slices, invert grayscale to highlight low-intensity structures, create a new segmentation for white and gray matter regions, threshold ventricles in the segmentation editor, draw a circular ROI ov... | Import_Rishu_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_04_Add_New_S... | {
"id": "3dslicer_endtoend_190",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, normalize intensi... | 17 | 17 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI... | /home/rishu/Projects/3D slicer/MRI Brain |
191 | 3dslicer_endtoend_191 | Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, invert grayscale to highlight low-intensity structures, apply histogram equalization for better contrast, convert segmentation to 3D model for visualization, use the Paint tool to refine segmentation boundaries, create a rectangul... | Import_Rishu_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Mode... | {
"id": "3dslicer_endtoend_191",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, invert grayscale ... | 17 | 17 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI ... | /home/rishu/Projects/3D slicer/MRI Brain |
192 | 3dslicer_endtoend_192 | Open MRI project for Rishu, set layout to 1×2, and ensure axial and sagittal slices are visible, apply Gaussian smoothing to denoise the volume, run bias correction to remove shading artifacts, apply smoothing to the segmentation mask, convert segmentation to 3D model for visualization, compute ROI statistics for mean ... | Import_Rishu_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMR... | {
"id": "3dslicer_endtoend_192",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Open MRI project for Rishu, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, apply... | 21 | 21 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/M... | /home/rishu/Projects/3D slicer/MRI Brain |
193 | 3dslicer_endtoend_193 | Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram equalization for better contrast, run bias correction to remove shading artifacts, use the Paint tool to refine segmentation boundaries, convert segmentation to 3D model for visualization, add annotation label to h... | Import_Rishu_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMR... | {
"id": "3dslicer_endtoend_193",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram e... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MR... | /home/rishu/Projects/3D slicer/MRI Brain |
194 | 3dslicer_endtoend_194 | Open MRI project for Rishu, set layout to 1×2, and ensure axial and sagittal slices are visible, apply Gaussian smoothing to denoise the volume, normalize intensity levels across slices, create a new segmentation for white and gray matter regions, convert segmentation to 3D model for visualization, add annotation label... | Import_Rishu_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_Surfac... | {
"id": "3dslicer_endtoend_194",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Open MRI project for Rishu, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, apply... | 17 | 17 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/M... | /home/rishu/Projects/3D slicer/MRI Brain |
195 | 3dslicer_endtoend_195 | Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, invert grayscale to highlight low-intensity structures, normalize intensity levels across slices, convert segmentation to 3D model for visualization, threshold ventricles in the segmentation editor, create a rectangular ROI to i... | Import_Rishu_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMR... | {
"id": "3dslicer_endtoend_195",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, invert grayscal... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/... | /home/rishu/Projects/3D slicer/MRI Brain |
196 | 3dslicer_endtoend_196 | Open MRI project for Rishu, set layout to 1×2, and ensure axial and sagittal slices are visible, apply Gaussian smoothing to denoise the volume, apply histogram equalization for better contrast, create a new segmentation for white and gray matter regions, create a new segmentation for white and gray matter regions, com... | Import_Rishu_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_20_Select_Apply.png → BMRI_20_ROI_Statistics_Table.png → BMRI_38_MPR_S... | {
"id": "3dslicer_endtoend_196",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Open MRI project for Rishu, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, apply... | 16 | 16 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/M... | /home/rishu/Projects/3D slicer/MRI Brain |
197 | 3dslicer_endtoend_197 | Open MRI project for Rishu, set layout to 1×2, and ensure axial and sagittal slices are visible, apply histogram equalization for better contrast, normalize intensity levels across slices, use the Paint tool to refine segmentation boundaries, convert segmentation to 3D model for visualization, add annotation label to h... | Import_Rishu_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_37_Layou... | {
"id": "3dslicer_endtoend_197",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Open MRI project for Rishu, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, apply... | 16 | 16 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MR... | /home/rishu/Projects/3D slicer/MRI Brain |
198 | 3dslicer_endtoend_198 | Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, invert grayscale to highlight low-intensity structures, invert grayscale to highlight low-intensity structures, threshold ventricles in the segmentation editor, apply smoothing to the segmentation mask, place two fiducial points (... | Import_Rishu_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_26_Sele... | {
"id": "3dslicer_endtoend_198",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Import MRI volume of Rishu, open the Data module, and confirm T1 and T2 scans are loaded, invert grayscale ... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D slic... | /home/rishu/Projects/3D slicer/MRI Brain |
199 | 3dslicer_endtoend_199 | Open MRI project for Rishu, set layout to 1×2, and ensure axial and sagittal slices are visible, invert grayscale to highlight low-intensity structures, normalize intensity levels across slices, create a new segmentation for white and gray matter regions, threshold ventricles in the segmentation editor, add annotation ... | Import_Rishu_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_04_Add_New_... | {
"id": "3dslicer_endtoend_199",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Open MRI project for Rishu, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, inver... | 18 | 18 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MR... | /home/rishu/Projects/3D slicer/MRI Brain |
200 | 3dslicer_endtoend_200 | Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, apply Gaussian smoothing to denoise the volume, apply histogram equalization for better contrast, convert segmentation to 3D model for visualization, use the Paint tool to refine segmentation boundaries, compute ROI statistics f... | Import_Rishu_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_20_Select_Apply.png → BMRI_20_ROI_Statist... | {
"id": "3dslicer_endtoend_200",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Rishu_Data.png"
},
"instruction": "Load MRI brain series of Rishu, import the dataset, and verify orientation in Four-up view, apply Gaussian ... | 17 | 17 | /home/rishu/Projects/3D slicer/MRI Brain/Import_Rishu_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D sli... | /home/rishu/Projects/3D slicer/MRI Brain |
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