repo stringlengths 7 90 | file_url stringlengths 81 315 | file_path stringlengths 4 228 | content stringlengths 0 32.8k | language stringclasses 1
value | license stringclasses 7
values | commit_sha stringlengths 40 40 | retrieved_at stringdate 2026-01-04 14:38:15 2026-01-05 02:33:18 | truncated bool 2
classes |
|---|---|---|---|---|---|---|---|---|
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/add_things_queue.py | scripts/add_things_queue.py | import argparse
import json
import os
import traceback
from datetime import datetime
from time import time, sleep
import requests
from redis.client import Redis
from sqlalchemy import text
import models
from app import REDIS_QUEUE_URL, logger, db
from models import REDIS_ADD_THINGS_QUEUE
from scripts.works_query impo... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/ingest_issn.py | scripts/ingest_issn.py | import json
import os
import time
from argparse import ArgumentParser
from datetime import datetime
from threading import Thread
from bs4 import BeautifulSoup
from sqlalchemy import any_
from models import Publisher
from models.source import Source
from app import db
import requests
from util import normalize_title... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/sync_to_redis.py | scripts/sync_to_redis.py | import time
import logging
from redis import Redis
import csv
from app import REDIS_QUEUE_URL
from models import REDIS_WORK_QUEUE
logger = logging.getLogger(__name__)
def add_missing_ids_to_redis(batch_size=100):
_redis = Redis.from_url(REDIS_QUEUE_URL)
with open('scripts/work_ids_2024_10_17.csv', 'r') as f:... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/export_affiliations_from_elasticsearch.py | scripts/export_affiliations_from_elasticsearch.py | # -*- coding: utf-8 -*-
DESCRIPTION = """TODO: description"""
import sys, os, time, json, gzip, re
from pathlib import Path
from datetime import datetime
from timeit import default_timer as timer
try:
from humanfriendly import format_timespan
except ImportError:
def format_timespan(seconds):
return ... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/__init__.py | scripts/__init__.py | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false | |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/merge_authors_from_csv.py | scripts/merge_authors_from_csv.py | # -*- coding: utf-8 -*-
DESCRIPTION = """given a csv file with 2 columns [merge_away_id, merge_into_id]
merge all of them, and move them to the front of the queue"""
import sys, os, time
from pathlib import Path
from datetime import datetime
from timeit import default_timer as timer
import csv
try:
from humanfrie... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/update_ror_institutions.py | scripts/update_ror_institutions.py | # -*- coding: utf-8 -*-
DESCRIPTION = """Update institutions from ROR datadump"""
# Step 1: run this script (`python -m scripts.update_ror_institutions`)
# (this will take 8 hours or so)
#
# Step 2: upsert into ins.ror_summary table:
# ```sql
# insert into ins.ror_summary
# select * from ins.ror_summary_view
# on con... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/works_magnet_github_export.py | scripts/works_magnet_github_export.py | # -*- coding: utf-8 -*-
DESCRIPTION = """Get a table of works-magnet corrections from Github issues."""
import sys, os, time
from pathlib import Path
from datetime import datetime
from timeit import default_timer as timer
try:
from humanfriendly import format_timespan
except ImportError:
def format_timespan(s... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/queue.py | scripts/queue.py | import datetime
import random
from time import sleep
from time import time
import shortuuid
from sqlalchemy import text
from sqlalchemy import orm
from sqlalchemy import exc
from sqlalchemy.orm import selectinload
from sqlalchemy import insert
from sqlalchemy import delete
from collections import defaultdict
import arg... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/new_redis_key.py | scripts/new_redis_key.py | from argparse import ArgumentParser
from redis import Redis
from app import REDIS_QUEUE_URL
REDIS = Redis.from_url(REDIS_QUEUE_URL)
BATCH_SIZE = 100_000
methods_map = {'set': REDIS.sadd,
'sorted_set': REDIS.zadd}
def put_batch(key, key_type, *args):
method = methods_map[key_type]
method(key... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/front_of_fast_queue.py | scripts/front_of_fast_queue.py | import argparse
import csv
from collections import defaultdict
from time import gmtime, mktime, sleep
from redis import Redis
from app import REDIS_QUEUE_URL, db
from models import REDIS_WORK_QUEUE
from util import openalex_works_paginate, chunks
_redis = Redis.from_url(REDIS_QUEUE_URL)
def front_of_fast_queue_one... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/ingest_works_magnet_requests.py | scripts/ingest_works_magnet_requests.py | import argparse
import boto3
import json
import os
import time
import requests
import psycopg2
import gspread
from google.oauth2 import service_account
from multiprocessing import Pool
from sqlalchemy import create_engine
from app import logger
from datetime import datetime
import scripts.works_magnet_auto_approver as ... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/enqueue_works_with_changed_authors.py | scripts/enqueue_works_with_changed_authors.py | from time import mktime, gmtime
from redis import Redis
from app import REDIS_QUEUE_URL
from app import db
from app import logger
from models import REDIS_WORK_QUEUE
_redis = Redis.from_url(REDIS_QUEUE_URL)
class WorkToEnqueue(db.Model):
__table_args__ = {'schema': 'authorships'}
__tablename__ = "works_to_... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/unpaywall_recordthresher_refresh.py | scripts/unpaywall_recordthresher_refresh.py | import argparse
import json
import time
import traceback
from datetime import datetime
import requests
from redis import Redis
from sqlalchemy import text
from app import REDIS_QUEUE_URL, db, unpaywall_db_engine
from scripts.add_things_queue import enqueue_jobs
from util import openalex_works_paginate, normalize_doi
... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/pg_to_redshift.py | scripts/pg_to_redshift.py | import argparse
import datetime
import logging
import os
import subprocess
import time
import boto3
from sqlalchemy import create_engine
from const import SUPER_SYSTEM_INSTITUTIONS
logger = logging.getLogger(__name__)
logging.basicConfig(level=logging.INFO, format='%(asctime)s - %(levelname)s - %(message)s')
"""
To... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/fast_queue.py | scripts/fast_queue.py | import argparse
from collections import defaultdict
from concurrent.futures import ThreadPoolExecutor, as_completed
from time import sleep, time
from elasticsearch import Elasticsearch
from elasticsearch.helpers import bulk, BulkIndexError
from redis import Redis
from sqlalchemy import orm, text, insert, delete
from s... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/queue_work_process_embeddings.py | scripts/queue_work_process_embeddings.py | import argparse
from time import sleep, time
import random
from sqlalchemy import orm, text
from sqlalchemy.orm import selectinload
from sqlalchemy.exc import SQLAlchemyError
import models
from models.work_embedding import get_and_save_embeddings
from app import db, logger
from util import elapsed
"""
Run with: hero... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/ingest_author_curation_requests.py | scripts/ingest_author_curation_requests.py | import pandas as pd
import boto3
import json
import os
import random
import psycopg2
import unicodedata
from datetime import datetime
from nameparser import HumanName
from unidecode import unidecode
import gspread
from google.oauth2 import service_account
from app import logger
# load config vars
AWS_ACCESS_KEY_ID = o... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | true |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/queue_record_assign_work.py | scripts/queue_record_assign_work.py | import argparse
from collections import defaultdict
from time import sleep, time
from sqlalchemy import orm, text
from sqlalchemy.orm import lazyload, joinedload, selectinload
import models
from app import db
from app import logger
from util import elapsed
"""
Run with a recordthresher id: heroku local:run python -... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/queue_work_store_vectors.py | scripts/queue_work_store_vectors.py | import argparse
from time import sleep
from time import time
import random
from sqlalchemy import orm
from sqlalchemy import text
from sqlalchemy.orm import selectinload
import models
from models.work_embedding import store_embeddings
from app import db, logger
from util import elapsed
"""
Run with: heroku local:run... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/works_query.py | scripts/works_query.py | from sqlalchemy import orm
from sqlalchemy.orm import selectinload
import models
from app import db
def base_slow_queue_works_query():
return db.session.query(models.Work).options(
selectinload(models.Work.records).selectinload
(models.Record.journals).selectinload
(models.Source.merged_i... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/merge_duplicate_works.py | scripts/merge_duplicate_works.py | import pandas as pd
import requests
"""
This script takes known duplicates and decides which work to merge into.
"""
def get_paper_details(paper_ids):
formatted_paper_ids = "|".join([f"W{paper_id}" for paper_id in paper_ids])
url = f"https://api.openalex.org/works?filter=ids.openalex:{formatted_paper_ids}&s... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/helpers/__init__.py | scripts/helpers/__init__.py | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false | |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/helpers/single_work_fast_queue.py | scripts/helpers/single_work_fast_queue.py | # -*- coding: utf-8 -*-
DESCRIPTION = """run fast queue for one work and refresh elasticsearch index"""
import sys, os, time
from pathlib import Path
from datetime import datetime
from timeit import default_timer as timer
try:
from humanfriendly import format_timespan
except ImportError:
def format_timespan... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/wikidata_ror/update_publishers.py | scripts/wikidata_ror/update_publishers.py | from app import db
from models.publisher import Publisher
from scripts.wikidata_ror.country_code import get_country_code
from scripts.wikidata_ror.homepage import get_homepage_url
from scripts.wikidata_ror.image_url import get_image_url, get_image_thumbnail_url
"""
Update publishers with data from Wikidata and ROR.
R... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/wikidata_ror/description.py | scripts/wikidata_ror/description.py | from scripts.wikidata_ror.normalize import normalize_wikidata_id
from scripts.wikidata_ror.response import fetch_wikidata_response
def get_description(wikidata_id):
wikidata_description = None
if wikidata_id:
wikidata_shortcode = normalize_wikidata_id(wikidata_id)
wikidata_response = fetch_wi... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/wikidata_ror/find_wikidata_ids.py | scripts/wikidata_ror/find_wikidata_ids.py | from scripts.wikidata_ror.cached_session import cached_session
from scripts.wikidata_ror.response import fetch_wikidata_response
def find_wikidata_id(display_name, words_to_ignore=None, words_to_include=None):
# search the wikidata API for the display_name
session = cached_session()
r = session.get(
... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/wikidata_ror/response.py | scripts/wikidata_ror/response.py | from scripts.wikidata_ror.cached_session import cached_session
from scripts.wikidata_ror.normalize import normalize_ror
def fetch_ror_response(ror_id):
ror_shortcode = normalize_ror(ror_id)
ror_url = f"https://api.ror.org/organizations/{ror_shortcode}"
session = cached_session()
response = session.get... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/wikidata_ror/normalize.py | scripts/wikidata_ror/normalize.py | import re
def normalize_ror(ror):
if not ror:
return None
ror = ror.strip().lower()
p = re.compile(r"([a-z\d]*$)")
matches = re.findall(p, ror)
if len(matches) == 0:
return None
ror = matches[0]
ror = ror.replace("\0", "")
return ror
def normalize_wikidata_id(wikidata... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/wikidata_ror/cached_session.py | scripts/wikidata_ror/cached_session.py | import random
from requests_cache import CachedSession, RedisCache
from redis import Redis
from app import REDIS_URL
connection = Redis.from_url(REDIS_URL)
def cached_session():
cache_backend = RedisCache(connection=connection, expire_after=None)
random_expire_one_to_three_days = random.randint(86400, 25920... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/wikidata_ror/find_source_wikidata_ids.py | scripts/wikidata_ror/find_source_wikidata_ids.py | from app import db
from models.source import Source
from scripts.wikidata_ror.find_wikidata_ids import find_wikidata_id_for_source
"""
Find missing source wikidata IDs.
Run with `python -m scripts.wikidata_ror.find_source_wikidata_ids`.
"""
def find_source_wiki_ids():
sources = Source.query.with_entities(
... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/wikidata_ror/alternate_titles.py | scripts/wikidata_ror/alternate_titles.py | from scripts.wikidata_ror.normalize import normalize_wikidata_id, normalize_ror
from scripts.wikidata_ror.response import fetch_wikidata_response, fetch_ror_response
def get_alternate_titles(wikidata_id, ror_id=None):
wikidata_alternate_titles = get_wikidata_alternate_titles(wikidata_id)
ror_alternate_titles ... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/wikidata_ror/update_sources.py | scripts/wikidata_ror/update_sources.py | from app import db
from models.source import Source
from scripts.wikidata_ror.country_code import get_country_code
from scripts.wikidata_ror.homepage import get_homepage_url
"""
Update sources with data from Wikidata.
Run with `python -m scripts.wikidata_ror.update_sources`.
"""
def update_sources():
sources = S... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/wikidata_ror/homepage.py | scripts/wikidata_ror/homepage.py | from scripts.wikidata_ror.normalize import normalize_wikidata_id, normalize_ror
from scripts.wikidata_ror.response import fetch_wikidata_response, fetch_ror_response
def get_homepage_url(wikidata_id, ror_id=None):
wikidata_homepage_url = None
ror_homepage_url = None
if wikidata_id:
wikidata_short... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/wikidata_ror/__init__.py | scripts/wikidata_ror/__init__.py | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false | |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/wikidata_ror/image_url.py | scripts/wikidata_ror/image_url.py | from scripts.wikidata_ror.normalize import normalize_wikidata_id
from scripts.wikidata_ror.response import fetch_wikidata_response
def get_image_url(wikidata_id):
wikidata_image_url = None
if wikidata_id:
wikidata_shortcode = normalize_wikidata_id(wikidata_id)
wikidata_response = fetch_wikidat... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/wikidata_ror/country_code.py | scripts/wikidata_ror/country_code.py | from scripts.wikidata_ror.normalize import normalize_wikidata_id, normalize_ror
from scripts.wikidata_ror.response import fetch_wikidata_response, fetch_ror_response
def get_country_code(wikidata_id, ror_id=None):
wikidata_country_code = get_wikidata_country_code(wikidata_id) if wikidata_id else None
ror_coun... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/wikidata_ror/update_funders.py | scripts/wikidata_ror/update_funders.py | from app import db
from models.funder import Funder
from scripts.wikidata_ror.alternate_titles import get_alternate_titles
from scripts.wikidata_ror.description import get_description
from scripts.wikidata_ror.homepage import get_homepage_url
from scripts.wikidata_ror.image_url import get_image_url, get_image_thumbnail... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/tracking/trackdb.py | tracking/trackdb.py | from typing import List, Union
from app import db
from sqlalchemy import text
from sqlalchemy.engine.row import Row
def query_recordthresher_record_by_doi(doi: str) -> List[Row]:
sq = """select * from ins.recordthresher_record where doi = :doi order by id"""
params = {
"doi": doi,
}
result = d... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/tracking/trackapi.py | tracking/trackapi.py | from cleanup.util import make_request
MAILTO = "dev@ourresearch.org"
def query_api_by_work_id(work_id: int):
url = f"https://api.openalex.org/works/W{work_id}"
params = {
"mailto": MAILTO,
}
r = make_request(url, params=params)
if r.status_code == 200:
return r.json()
else:
... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/tracking/__init__.py | tracking/__init__.py | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false | |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/tracking/scripts/track_all_from_tbl.py | tracking/scripts/track_all_from_tbl.py | # -*- coding: utf-8 -*-
DESCRIPTION = """track all active items in the logs.recordtrack_record table"""
import sys, os, time
from pathlib import Path
from datetime import datetime
from timeit import default_timer as timer
try:
from humanfriendly import format_timespan
except ImportError:
def format_timespan... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/tracking/scripts/add_new_crossref.py | tracking/scripts/add_new_crossref.py | # -*- coding: utf-8 -*-
DESCRIPTION = """add the most recent crossref article to track"""
import sys, os, time
from pathlib import Path
from datetime import datetime
from timeit import default_timer as timer
import requests
try:
from humanfriendly import format_timespan
except ImportError:
def format_times... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/tracking/models/recordtrack_record.py | tracking/models/recordtrack_record.py | import json
from datetime import datetime
from app import db
from util import text_md5
def existing_hash(hash: str):
from . import RecordTrackEvent
results = db.session.query(RecordTrackEvent).filter_by(payload_hash=hash).all()
return results
class RecordTrack(db.Model):
__table_args__ = {"schema":... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/tracking/models/recordtrack_event.py | tracking/models/recordtrack_event.py | from app import db
from sqlalchemy.dialects.postgresql import JSONB
class RecordTrackEvent(db.Model):
__table_args__ = {"schema": "logs"}
__tablename__ = "recordtrack_event"
id = db.Column(db.BigInteger, primary_key=True)
recordtrack_record_id = db.Column(
db.BigInteger, db.ForeignKey("logs.r... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/tracking/models/recordtrack_event_hash.py | tracking/models/recordtrack_event_hash.py | from app import db
from sqlalchemy.dialects.postgresql import JSONB
class RecordTrackEventHash(db.Model):
"""This table just stores the hash, so we don't have to store a lot of duplicates of the payload"""
__table_args__ = {"schema": "logs"}
__tablename__ = "recordtrack_event_hash"
recordtrack_recor... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/tracking/models/__init__.py | tracking/models/__init__.py | from .recordtrack_record import RecordTrack
from .recordtrack_event import RecordTrackEvent
from .recordtrack_event_hash import RecordTrackEventHash | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/detective/work_type_detective.py | detective/work_type_detective.py | import re
from util import clean_doi, entity_md5, normalize_title_like_sql, \
matching_author_strings, get_crossref_json_from_unpaywall, \
words_within_distance
from const import PREPRINT_JOURNAL_IDS, REVIEW_JOURNAL_IDS, \
MAX_AFFILIATIONS_PER_AUTHOR
from app import db
from typing import TYPE_CHECKING
if T... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/detective/__init__.py | detective/__init__.py | from .work_type_detective import WorkTypeDetective | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/orcid.py | models/orcid.py | from app import db
class Orcid(db.Model):
__table_args__ = {'schema': 'mid'}
__tablename__ = "orcid"
orcid = db.Column(db.Text, db.ForeignKey("mid.author_orcid.orcid"), primary_key=True)
api_json = db.Column(db.Text)
def __repr__(self):
return "<Orcid ( {} )>".format(self.orcid)
| python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/work.py | models/work.py | import datetime
import hashlib
import json
import os
import re
import random
from collections import defaultdict
import stat
from elasticsearch import Elasticsearch
from enum import IntEnum
from functools import cache
from time import sleep
from time import time
from typing import List
import requests
from cached_prop... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | true |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/topic.py | models/topic.py | import datetime
from cached_property import cached_property
from sqlalchemy import orm
from app import db
from app import get_apiurl_from_openalex_url
from app import logger
from app import TOPICS_INDEX
import models
from util import entity_md5
def as_topic_openalex_id(id):
from app import API_HOST
return f... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/work_citations_normalized_percentile.py | models/work_citations_normalized_percentile.py | from app import db
class WorkCitationNormPer(db.Model):
__table_args__ = {'schema': 'counts'}
__tablename__ = "work_norm_citation_percentile_by_type_year_subfield"
work_id = db.Column(db.BigInteger, db.ForeignKey("mid.work.paper_id"), primary_key=True)
normalized_citation_percentile = db.Column(db.Fl... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/citation.py | models/citation.py | from app import db
# truncate mid.citation
# insert into mid.citation (select * from legacy.mag_main_paper_references_id)
class CitationUnmatched(db.Model):
__table_args__ = {'schema': 'mid'}
__tablename__ = "citation_unmatched"
paper_id = db.Column(db.BigInteger, db.ForeignKey("mid.work.paper_id"), pr... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/publisher.py | models/publisher.py | import datetime
from cached_property import cached_property
from sqlalchemy import text
from sqlalchemy.dialects.postgresql import JSONB
from app import PUBLISHERS_INDEX
from app import db
from app import logger
from util import entity_md5
def as_publisher_openalex_id(id):
from app import API_HOST
return f"... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/work_concept.py | models/work_concept.py | from app import db
# truncate mid.work_concept
# insert into mid.work_concept (select * from legacy.mag_advanced_paper_fields_of_study)
# refresh materialized view mid.work_concept_for_api_mv
class WorkConcept(db.Model):
__table_args__ = {'schema': 'mid'}
__tablename__ = "work_concept"
paper_id = db.Co... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/retraction_watch.py | models/retraction_watch.py | import json
from cached_property import cached_property
from app import db
class RetractionWatch(db.Model):
__table_args__ = {"schema": "ins"}
__tablename__ = "retraction_watch"
record_id = db.Column(db.BigInteger, primary_key=True)
OriginalPaperDOILower = db.Column(db.Text, db.ForeignKey("mid.work... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/institution_topic.py | models/institution_topic.py | from app import db
from models.topic import as_topic_openalex_id
from models.topic import Topic
class InstitutionTopic(db.Model):
__table_args__ = {'schema': 'counts'}
__tablename__ = "institution_topic_for_api_full"
affiliation_id = db.Column(db.BigInteger, db.ForeignKey("mid.institution.affiliation_id... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/source_type.py | models/source_type.py | import datetime
from cached_property import cached_property
from app import db
from app import SOURCE_TYPES_INDEX
from models.counts import citation_count_from_elastic, works_count_from_api
from bulk_actions import create_bulk_actions
class SourceType(db.Model):
__table_args__ = {'schema': 'mid'}
__tablenam... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/subfield.py | models/subfield.py | import datetime
from sqlalchemy.dialects.postgresql import JSONB
from app import db
from bulk_actions import create_bulk_actions
import models
from app import SUBFIELDS_INDEX
class Subfield(db.Model):
__table_args__ = {'schema': 'mid'}
__tablename__ = "subfield"
subfield_id = db.Column(db.Integer, db.F... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/author_orcid.py | models/author_orcid.py | from app import db
class AuthorOrcid(db.Model):
__table_args__ = {'schema': 'mid'}
__tablename__ = "author_orcid"
author_id = db.Column(db.BigInteger, db.ForeignKey("mid.author.author_id"), primary_key=True)
orcid = db.Column(db.Text) # shouldn't have more than one but might?
# evidence = db.Colu... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/abstract.py | models/abstract.py | import json
from cached_property import cached_property
from app import db
# insert into mid.abstract (paper_id, indexed_abstract) (select paper_id, inverted_index_json from legacy.mag_nlp_abstracts_inverted);
# update mid.abstract set indexed_abstract=replace(indexed_abstract, '\\u0000', '') where indexed_abstract ~... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/author_concept.py | models/author_concept.py | from cached_property import cached_property
from app import db
from models.concept import as_concept_openalex_id
# refresh materialized view mid.author_concept_for_api_mv (1200 seconds)
class AuthorConcept(db.Model):
__table_args__ = {'schema': 'mid'}
__tablename__ = "author_concept_for_api_view"
author_... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/language.py | models/language.py | import datetime
from cached_property import cached_property
from app import db
from app import LANGUAGES_INDEX
from models.counts import citation_count_from_elastic, works_count_from_api
from bulk_actions import create_bulk_actions
class Language(db.Model):
__table_args__ = {'schema': 'mid'}
__tablename__ =... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/ror.py | models/ror.py | from app import db
class Ror(db.Model):
__table_args__ = {'schema': 'ins'}
__tablename__ = "ror_summary"
ror_id = db.Column(db.Text, db.ForeignKey("mid.institution.ror_id"), primary_key=True)
name = db.Column(db.Text)
city = db.Column(db.Text)
state = db.Column(db.Text)
country = db.Colu... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/work_type.py | models/work_type.py | import datetime
from cached_property import cached_property
from sqlalchemy.dialects.postgresql import JSONB
from app import db
from app import WORK_TYPES_INDEX
from models.counts import citation_count_from_elastic, works_count_from_api
from bulk_actions import create_bulk_actions
class WorkType(db.Model):
__ta... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/work_sdg.py | models/work_sdg.py | import requests
from requests.exceptions import Timeout
from app import db, logger, SDG_CLASSIFIER_URL
class WorkSDG(db.Model):
__table_args__ = {'schema': 'mid'}
__tablename__ = "work_sdg"
paper_id = db.Column(db.BigInteger, db.ForeignKey("mid.work.paper_id"), primary_key=True)
predictions = db.Colu... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/concept.py | models/concept.py | import datetime
import json
import urllib.parse
import requests
from cached_property import cached_property
from sqlalchemy import orm
from sqlalchemy import text
from app import CONCEPTS_INDEX
from app import MAX_MAG_ID
from app import USER_AGENT
from app import db
from app import get_apiurl_from_openalex_url
from a... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/institution.py | models/institution.py | import datetime
import json
import os
import urllib.parse
from time import sleep
import requests
from cached_property import cached_property
from sqlalchemy import orm
from sqlalchemy import text
from sqlalchemy.dialects.postgresql import JSONB
from sqlalchemy.dialects.postgresql import insert
from sqlalchemy.orm impo... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/funder.py | models/funder.py | import datetime
from cached_property import cached_property
from sqlalchemy import text
from sqlalchemy.dialects.postgresql import JSONB
from app import COUNTRIES_ENDPOINT_PREFIX
from app import FUNDERS_INDEX
from app import db
from app import logger
from util import entity_md5
def as_funder_openalex_id(id):
fr... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/institution_type.py | models/institution_type.py | import datetime
from cached_property import cached_property
from app import db
from app import INSTITUTION_TYPES_INDEX
from models.counts import citation_count_from_elastic, works_count_from_api
from bulk_actions import create_bulk_actions
class InstitutionType(db.Model):
__table_args__ = {'schema': 'mid'}
... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/license.py | models/license.py | import datetime
from cached_property import cached_property
from app import db
from app import get_apiurl_from_openalex_url
from app import LICENSES_INDEX
from bulk_actions import create_bulk_actions
from models.counts import citation_count_from_elastic, works_count_from_elastic
def as_license_openalex_id(id):
... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/work_embedding.py | models/work_embedding.py | import os
import requests
from tenacity import retry, wait_exponential, stop_after_attempt, retry_if_exception_type
from elasticsearch import Elasticsearch, helpers
from app import db, logger, ELASTIC_EMBEDDINGS_URL
class WorkEmbedding(db.Model):
__table_args__ = {'schema': 'mid'}
__tablename__ = "work_embe... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/issn_to_issnl.py | models/issn_to_issnl.py | import json
from cached_property import cached_property
from app import db
class ISSNtoISSNL(db.Model):
__table_args__ = {"schema": "mid"}
__tablename__ = "journal_issn_to_issnl"
issn = db.Column(db.Text, primary_key=True)
issnl = db.Column(db.Text)
note = db.Column(db.Text)
updated_date = ... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/work_extra_id.py | models/work_extra_id.py | from app import db
# truncate mid.work_extra_ids
# insert into mid.work_extra_ids (select * from legacy.mag_main_paper_extended_attributes)
class WorkExtraIds(db.Model):
__table_args__ = {'schema': 'mid'}
__tablename__ = "work_extra_ids"
paper_id = db.Column(db.BigInteger, db.ForeignKey("mid.work.paper... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/work_openapc.py | models/work_openapc.py | from app import db
class WorkOpenAPC(db.Model):
__table_args__ = {'schema': 'mid'}
__tablename__ = "work_openapc"
paper_id = db.Column(db.BigInteger, db.ForeignKey("mid.work.paper_id"), primary_key=True)
doi = db.Column(db.Text)
year = db.Column(db.Integer)
apc_in_euro = db.Column(db.Integer)... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/source_language_override.py | models/source_language_override.py | import datetime
import json
from cached_property import cached_property
from sqlalchemy import text
from sqlalchemy.dialects.postgresql import JSONB
from sqlalchemy.types import ARRAY
from app import COUNTRIES_ENDPOINT_PREFIX
from app import MAX_MAG_ID
from app import db
from app import get_apiurl_from_openalex_url
f... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/record.py | models/record.py | import datetime
import json
from cached_property import cached_property
from sqlalchemy import orm, and_, desc
from sqlalchemy.orm import raiseload
from sqlalchemy.sql.expression import func
from app import db
from const import MAX_AFFILIATIONS_PER_AUTHOR, MIN_CHARACTERS_PER_AFFILIATION, \
BAD_TITLES
from models.... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/location.py | models/location.py | import json
from app import db
def get_repository_institution_from_source_url(source_url):
lookup = {"europepmc.org": "Europe PMC",
"ncbi.nlm.nih.gov/pmc": "PMC",
"pubmed.ncbi.nlm.nih.gov": "PubMed",
"arxiv.org": "arXiv",
"ci.nii.ac.jp": "CiNii",
... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/work_author_orcid.py | models/work_author_orcid.py | from app import db
class WorkAuthorOrcid(db.Model):
__table_args__ = {'schema': 'orcid'}
__tablename__ = "final_orcid"
paper_id = db.Column(db.BigInteger, db.ForeignKey("mid.affiliation.paper_id"), primary_key=True)
author_sequence_number = db.Column(db.BigInteger, db.ForeignKey("mid.affiliation.auth... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/ror_matching.py | models/ror_matching.py | import re
import unidecode
import unicodedata
from collections import namedtuple
from rapidfuzz import fuzz
from app import db
from const import ROR_COUNTRIES_LIST
class RORGapInstitution(db.Model):
__table_args__ = {'schema': 'ins'}
__tablename__ = "ror_institutions_for_parser_gap"
affiliation_id = db.C... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/work_topic.py | models/work_topic.py | from app import db
# Need to add this for mid.work_topic?
# refresh materialized view mid.work_concept_for_api_mv
class WorkTopic(db.Model):
__table_args__ = {'schema': 'mid'}
__tablename__ = "work_topic"
paper_id = db.Column(db.BigInteger, db.ForeignKey("mid.work.paper_id"), primary_key=True)
topic_... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/merge_utils.py | models/merge_utils.py | import json
import re
from copy import deepcopy
import math
from enum import Enum
from typing import List
from app import logger
from const import MAX_AFFILIATIONS_PER_AUTHOR
from util import normalize
PARSED_RECORD_TYPES = {'crossref_parseland', 'parsed_pdf'}
def affiliations_probably_invalid(normalized_authors):... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/summary_stats.py | models/summary_stats.py | from app import db
class AuthorImpactFactor(db.Model):
__table_args__ = {'schema': 'mid'}
__tablename__ = "author_impact_factor_mv"
author_id = db.Column(db.BigInteger, db.ForeignKey("mid.author.author_id"), primary_key=True)
impact_factor = db.Column(db.Float)
def __repr__(self):
return... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/keyword.py | models/keyword.py | import datetime
from cached_property import cached_property
from sqlalchemy import orm
from app import db
from app import get_apiurl_from_openalex_url
from app import logger
from app import KEYWORDS_INDEX
from bulk_actions import create_bulk_actions
from models.counts import citation_count_from_elastic, works_count_f... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/sdg.py | models/sdg.py | import datetime
from cached_property import cached_property
from app import db, SDGS_INDEX
from bulk_actions import create_bulk_actions
from models.counts import citation_count_from_elastic, works_count_from_api
class SDG(db.Model):
__table_args__ = {'schema': 'mid'}
__tablename__ = "sdg"
sdg_id = db.C... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/work_keyword.py | models/work_keyword.py | from app import db
class WorkKeyword(db.Model):
__table_args__ = {'schema': 'mid'}
__tablename__ = "work_keyword_concept"
paper_id = db.Column(db.BigInteger, db.ForeignKey("mid.work.paper_id"), primary_key=True)
keyword_id = db.Column(db.Text, db.ForeignKey("mid.keyword.keyword_id"), primary_key=True... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/__init__.py | models/__init__.py | from sqlalchemy import and_, or_, orm, func
from sqlalchemy.orm import foreign, remote, selectinload
from app import db
from models.abstract import Abstract
from models.affiliation import Affiliation
from models.author import Author
from models.author_alternative_name import AuthorAlternativeName
from models.author_co... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/source.py | models/source.py | import datetime
import json
from cached_property import cached_property
from sqlalchemy import text
from sqlalchemy.dialects.postgresql import JSONB
from sqlalchemy.types import ARRAY
from app import COUNTRIES_ENDPOINT_PREFIX
from app import MAX_MAG_ID
from app import db
from app import get_apiurl_from_openalex_url
f... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/continent.py | models/continent.py | import datetime
from sqlalchemy.dialects.postgresql import JSONB
from app import db, CONTINENTS_INDEX
from bulk_actions import create_bulk_actions
class Continent(db.Model):
__table_args__ = {'schema': 'mid'}
__tablename__ = "continent"
continent_id = db.Column(db.Integer, primary_key=True)
display... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/author_alternative_name.py | models/author_alternative_name.py | from cached_property import cached_property
from app import db
class AuthorAlternativeName(db.Model):
__table_args__ = {'schema': 'legacy'}
__tablename__ = "mag_main_author_extended_attributes"
author_id = db.Column(db.BigInteger, db.ForeignKey("mid.author.author_id"), primary_key=True)
attribute_valu... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/unpaywall.py | models/unpaywall.py | import json
from cached_property import cached_property
from app import db
class Unpaywall(db.Model):
__table_args__ = {'schema': 'ins'}
__tablename__ = "unpaywall_recordthresher_fields"
recordthresher_id = db.Column(db.Text, db.ForeignKey("ins.recordthresher_record.id"), primary_key=True)
doi = db... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/affiliation.py | models/affiliation.py | from app import db
from models.institution import DELETED_INSTITUTION_ID
class Affiliation(db.Model):
__table_args__ = {'schema': 'mid'}
__tablename__ = "affiliation"
paper_id = db.Column(db.BigInteger, db.ForeignKey("mid.work.paper_id"), primary_key=True)
author_id = db.Column(db.BigInteger, db.Fore... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/author.py | models/author.py | import datetime
import json
import re
from cached_property import cached_property
from app import AUTHORS_INDEX
from app import MAX_MAG_ID
from app import db
from app import get_apiurl_from_openalex_url
from app import logger
from util import entity_md5
from util import truncate_on_word_break
DELETED_AUTHOR_ID = 531... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/concept_metadata.py | models/concept_metadata.py | from cached_property import cached_property
from app import db
from models.concept import Concept
class ConceptMetadata(db.Model):
__table_args__ = {'schema': 'mid'}
__tablename__ = "concept_metadata"
field_of_study_id = db.Column(db.BigInteger, db.ForeignKey("mid.concept_api_mv.field_of_study_id"), prim... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/field.py | models/field.py | import datetime
from sqlalchemy.dialects.postgresql import JSONB
from app import db, FIELDS_INDEX
from bulk_actions import create_bulk_actions
import models
class Field(db.Model):
__table_args__ = {'schema': 'mid'}
__tablename__ = "field"
field_id = db.Column(db.Integer, db.ForeignKey("mid.topic.field_... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/source_topic.py | models/source_topic.py | from app import db
from models.topic import as_topic_openalex_id
from models.topic import Topic
class SourceTopic(db.Model):
__table_args__ = {'schema': 'counts'}
__tablename__ = "source_topic_for_api_full"
journal_id = db.Column(db.BigInteger, db.ForeignKey("mid.journal.journal_id"), primary_key=True)
... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/work_related_version.py | models/work_related_version.py | from app import db
class WorkRelatedVersion(db.Model):
__table_args__ = {'schema': 'mid'}
__tablename__ = "work_related_version"
id = db.Column(db.Integer, primary_key=True)
work_id = db.Column(db.BigInteger, db.ForeignKey("mid.work.paper_id"))
version_work_id = db.Column(db.BigInteger, db.Foreig... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/mesh.py | models/mesh.py | from app import db
# truncate mid.mesh
# insert into mid.mesh (select * from legacy.mag_advanced_paper_mesh)
class Mesh(db.Model):
__table_args__ = {'schema': 'mid'}
__tablename__ = "mesh"
paper_id = db.Column(db.BigInteger, db.ForeignKey("mid.work.paper_id"), primary_key=True)
descriptor_ui = db.Co... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
ourresearch/openalex-guts | https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/models/author_topic.py | models/author_topic.py | from app import db
from models.topic import as_topic_openalex_id
from models.topic import Topic
class AuthorTopic(db.Model):
__table_args__ = {'schema': 'counts'}
__tablename__ = "author_topic_for_api_full"
author_id = db.Column(db.BigInteger, db.ForeignKey("mid.author.author_id"), primary_key=True)
... | python | MIT | 59706e52ceb84b12427334b046c47b7a6d95c862 | 2026-01-05T07:10:54.483482Z | false |
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