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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/basicsr/metrics/psnr_ssim.py
basicsr/metrics/psnr_ssim.py
import cv2 import numpy as np from basicsr.metrics.metric_util import reorder_image, to_y_channel from basicsr.utils.registry import METRIC_REGISTRY @METRIC_REGISTRY.register() def calculate_psnr(img, img2, crop_border, input_order='HWC', test_y_channel=False, **kwargs): """Calculate PSNR (Peak Signal-to-Noise R...
python
Apache-2.0
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2026-01-05T07:10:50.865533Z
false
zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/basicsr/models/base_model.py
basicsr/models/base_model.py
import os import time import torch from collections import OrderedDict from copy import deepcopy from torch.nn.parallel import DataParallel, DistributedDataParallel from basicsr.models import lr_scheduler as lr_scheduler from basicsr.utils import get_root_logger from basicsr.utils.dist_util import master_only class ...
python
Apache-2.0
89cbfc88a337344d6dee76278c96e033ec38d5c6
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/basicsr/models/cat_model.py
basicsr/models/cat_model.py
import torch from torch.nn import functional as F from basicsr.utils.registry import MODEL_REGISTRY from basicsr.models.sr_model import SRModel @MODEL_REGISTRY.register() class CATModel(SRModel): def test(self): self.use_chop = self.opt['val']['use_chop'] if 'use_chop' in self.opt['val'] else False ...
python
Apache-2.0
89cbfc88a337344d6dee76278c96e033ec38d5c6
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/basicsr/models/sr_model.py
basicsr/models/sr_model.py
import torch from collections import OrderedDict from os import path as osp from tqdm import tqdm from basicsr.archs import build_network from basicsr.losses import build_loss from basicsr.metrics import calculate_metric from basicsr.utils import get_root_logger, imwrite, tensor2img from basicsr.utils.registry import ...
python
Apache-2.0
89cbfc88a337344d6dee76278c96e033ec38d5c6
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/basicsr/models/cat_se_model.py
basicsr/models/cat_se_model.py
import torch from torch.nn import functional as F from basicsr.utils.registry import MODEL_REGISTRY from basicsr.models.sr_model import SRModel @MODEL_REGISTRY.register() class CATSEModel(SRModel): def test(self): # pad to multiplication of window_size if self.opt['val']['selfensemble_testing']:...
python
Apache-2.0
89cbfc88a337344d6dee76278c96e033ec38d5c6
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/basicsr/models/__init__.py
basicsr/models/__init__.py
import importlib from copy import deepcopy from os import path as osp from basicsr.utils import get_root_logger, scandir from basicsr.utils.registry import MODEL_REGISTRY __all__ = ['build_model'] # automatically scan and import model modules for registry # scan all the files under the 'models' folder and collect fi...
python
Apache-2.0
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/basicsr/models/lr_scheduler.py
basicsr/models/lr_scheduler.py
import math from collections import Counter from torch.optim.lr_scheduler import _LRScheduler class MultiStepRestartLR(_LRScheduler): """ MultiStep with restarts learning rate scheme. Args: optimizer (torch.nn.optimizer): Torch optimizer. milestones (list): Iterations that will decrease learn...
python
Apache-2.0
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/basicsr/archs/vgg_arch.py
basicsr/archs/vgg_arch.py
import os import torch from collections import OrderedDict from torch import nn as nn from torchvision.models import vgg as vgg from basicsr.utils.registry import ARCH_REGISTRY VGG_PRETRAIN_PATH = 'experiments/pretrained_models/vgg19-dcbb9e9d.pth' NAMES = { 'vgg11': [ 'conv1_1', 'relu1_1', 'pool1', 'conv2...
python
Apache-2.0
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/basicsr/archs/__init__.py
basicsr/archs/__init__.py
import importlib from copy import deepcopy from os import path as osp from basicsr.utils import get_root_logger, scandir from basicsr.utils.registry import ARCH_REGISTRY __all__ = ['build_network'] # automatically scan and import arch modules for registry # scan all the files under the 'archs' folder and collect fil...
python
Apache-2.0
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/basicsr/archs/arch_util.py
basicsr/archs/arch_util.py
import collections.abc import math import torch import torchvision import warnings from distutils.version import LooseVersion from itertools import repeat from torch import nn as nn from torch.nn import functional as F from torch.nn import init as init from torch.nn.modules.batchnorm import _BatchNorm # from basicsr.o...
python
Apache-2.0
89cbfc88a337344d6dee76278c96e033ec38d5c6
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/basicsr/archs/cat_arch.py
basicsr/archs/cat_arch.py
import torch import torch.nn as nn import torch.utils.checkpoint as checkpoint from timm.models.layers import DropPath, trunc_normal_ from einops.layers.torch import Rearrange from einops import rearrange import math import numpy as np from basicsr.utils.registry import ARCH_REGISTRY def img2windows(img, H_sp, W_s...
python
Apache-2.0
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/basicsr/archs/cat_unet_arch.py
basicsr/archs/cat_unet_arch.py
import torch import torch.nn as nn from timm.models.layers import DropPath from einops import rearrange from basicsr.utils.registry import ARCH_REGISTRY def img2windows(img, H_sp, W_sp): """ Input: Image (B, C, H, W) Output: Window Partition (B', N, C) """ B, C, H, W = img.shape img_reshape =...
python
Apache-2.0
89cbfc88a337344d6dee76278c96e033ec38d5c6
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/basicsr/utils/matlab_functions.py
basicsr/utils/matlab_functions.py
import math import numpy as np import torch def cubic(x): """cubic function used for calculate_weights_indices.""" absx = torch.abs(x) absx2 = absx**2 absx3 = absx**3 return (1.5 * absx3 - 2.5 * absx2 + 1) * ( (absx <= 1).type_as(absx)) + (-0.5 * absx3 + 2.5 * absx2 - 4 * absx + 2) * (((ab...
python
Apache-2.0
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/basicsr/utils/img_util.py
basicsr/utils/img_util.py
import cv2 import math import numpy as np import os import torch from torchvision.utils import make_grid def img2tensor(imgs, bgr2rgb=True, float32=True): """Numpy array to tensor. Args: imgs (list[ndarray] | ndarray): Input images. bgr2rgb (bool): Whether to change bgr to rgb. float3...
python
Apache-2.0
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/basicsr/utils/registry.py
basicsr/utils/registry.py
# Modified from: https://github.com/facebookresearch/fvcore/blob/master/fvcore/common/registry.py # noqa: E501 class Registry(): """ The registry that provides name -> object mapping, to support third-party users' custom modules. To create a registry (e.g. a backbone registry): .. code-block:: ...
python
Apache-2.0
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/basicsr/utils/logger.py
basicsr/utils/logger.py
import datetime import logging import time from .dist_util import get_dist_info, master_only initialized_logger = {} class AvgTimer(): def __init__(self, window=200): self.window = window # average window self.current_time = 0 self.total_time = 0 self.count = 0 self.avg...
python
Apache-2.0
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/basicsr/utils/misc.py
basicsr/utils/misc.py
import numpy as np import os import random import time import torch from os import path as osp from .dist_util import master_only def set_random_seed(seed): """Set random seeds.""" random.seed(seed) np.random.seed(seed) torch.manual_seed(seed) torch.cuda.manual_seed(seed) torch.cuda.manual_se...
python
Apache-2.0
89cbfc88a337344d6dee76278c96e033ec38d5c6
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/basicsr/utils/file_client.py
basicsr/utils/file_client.py
# Modified from https://github.com/open-mmlab/mmcv/blob/master/mmcv/fileio/file_client.py # noqa: E501 from abc import ABCMeta, abstractmethod class BaseStorageBackend(metaclass=ABCMeta): """Abstract class of storage backends. All backends need to implement two apis: ``get()`` and ``get_text()``. ``get(...
python
Apache-2.0
89cbfc88a337344d6dee76278c96e033ec38d5c6
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false
zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/basicsr/utils/__init__.py
basicsr/utils/__init__.py
from .file_client import FileClient from .img_util import crop_border, imfrombytes, img2tensor, imwrite, tensor2img from .logger import AvgTimer, MessageLogger, get_env_info, get_root_logger, init_tb_logger, init_wandb_logger from .misc import check_resume, get_time_str, make_exp_dirs, mkdir_and_rename, scandir, set_ra...
python
Apache-2.0
89cbfc88a337344d6dee76278c96e033ec38d5c6
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/basicsr/utils/dist_util.py
basicsr/utils/dist_util.py
# Modified from https://github.com/open-mmlab/mmcv/blob/master/mmcv/runner/dist_utils.py # noqa: E501 import functools import os import subprocess import torch import torch.distributed as dist import torch.multiprocessing as mp def init_dist(launcher, backend='nccl', **kwargs): if mp.get_start_method(allow_none=...
python
Apache-2.0
89cbfc88a337344d6dee76278c96e033ec38d5c6
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/basicsr/utils/options.py
basicsr/utils/options.py
import argparse import random import torch import yaml from collections import OrderedDict from os import path as osp from basicsr.utils import set_random_seed from basicsr.utils.dist_util import get_dist_info, init_dist, master_only def ordered_yaml(): """Support OrderedDict for yaml. Returns: yaml...
python
Apache-2.0
89cbfc88a337344d6dee76278c96e033ec38d5c6
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/basicsr/data/prefetch_dataloader.py
basicsr/data/prefetch_dataloader.py
import queue as Queue import threading import torch from torch.utils.data import DataLoader class PrefetchGenerator(threading.Thread): """A general prefetch generator. Ref: https://stackoverflow.com/questions/7323664/python-generator-pre-fetch Args: generator: Python generator. num_p...
python
Apache-2.0
89cbfc88a337344d6dee76278c96e033ec38d5c6
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/basicsr/data/data_util.py
basicsr/data/data_util.py
import cv2 import numpy as np import torch from os import path as osp from torch.nn import functional as F from basicsr.utils import img2tensor, scandir def generate_frame_indices(crt_idx, max_frame_num, num_frames, padding='reflection'): """Generate an index list for reading `num_frames` frames from a sequence ...
python
Apache-2.0
89cbfc88a337344d6dee76278c96e033ec38d5c6
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/basicsr/data/data_sampler.py
basicsr/data/data_sampler.py
import math import torch from torch.utils.data.sampler import Sampler class EnlargedSampler(Sampler): """Sampler that restricts data loading to a subset of the dataset. Modified from torch.utils.data.distributed.DistributedSampler Support enlarging the dataset for iteration-based training, for saving ...
python
Apache-2.0
89cbfc88a337344d6dee76278c96e033ec38d5c6
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false
zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/basicsr/data/__init__.py
basicsr/data/__init__.py
import importlib import numpy as np import random import torch import torch.utils.data from copy import deepcopy from functools import partial from os import path as osp from basicsr.data.prefetch_dataloader import PrefetchDataLoader from basicsr.utils import get_root_logger, scandir from basicsr.utils.dist_util impor...
python
Apache-2.0
89cbfc88a337344d6dee76278c96e033ec38d5c6
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/basicsr/data/paired_image_dataset.py
basicsr/data/paired_image_dataset.py
from torch.utils import data as data from torchvision.transforms.functional import normalize from basicsr.data.data_util import paired_paths_from_folder, paired_paths_from_lmdb, paired_paths_from_meta_info_file from basicsr.data.transforms import augment, paired_random_crop from basicsr.utils import FileClient, imfrom...
python
Apache-2.0
89cbfc88a337344d6dee76278c96e033ec38d5c6
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/basicsr/data/transforms.py
basicsr/data/transforms.py
import cv2 import random import torch def mod_crop(img, scale): """Mod crop images, used during testing. Args: img (ndarray): Input image. scale (int): Scale factor. Returns: ndarray: Result image. """ img = img.copy() if img.ndim in (2, 3): h, w = img.shape[0...
python
Apache-2.0
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/test_real_denoising_dnd.py
restormer/test_real_denoising_dnd.py
# The implementation builds on Restormer code https://github.com/swz30/Restormer import numpy as np import os import argparse from tqdm import tqdm import torch import torch.nn as nn import torch.nn.functional as F from basicsr.archs.cat_unet_arch import CAT_Unet from skimage import img_as_ubyte import cv2 import h5p...
python
Apache-2.0
89cbfc88a337344d6dee76278c96e033ec38d5c6
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false
zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/setup.py
restormer/setup.py
#!/usr/bin/env python from setuptools import find_packages, setup import os import subprocess import sys import time import torch from torch.utils.cpp_extension import (BuildExtension, CppExtension, CUDAExtension) version_file = 'basicsr/version.py' def readme(): return '...
python
Apache-2.0
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/test_real_denoising_sidd.py
restormer/test_real_denoising_sidd.py
# The implementation builds on Restormer code https://github.com/swz30/Restormer import numpy as np import os import argparse from tqdm import tqdm import torch import torch.nn as nn from basicsr.archs.cat_unet_arch import CAT_Unet import scipy.io as sio import cv2 from skimage import img_as_ubyte parser = argparse....
python
Apache-2.0
89cbfc88a337344d6dee76278c96e033ec38d5c6
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/generate_patches_sidd.py
restormer/generate_patches_sidd.py
import cv2 import torch import numpy as np from glob import glob from natsort import natsorted import os from tqdm import tqdm from pdb import set_trace as stx src = 'datasets/SIDD/raw' tar = 'datasets/SIDD/train' lr_tar = os.path.join(tar, 'input_crops') hr_tar = os.path.join(tar, 'target_crops') os.makedirs(lr_ta...
python
Apache-2.0
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/train.py
restormer/basicsr/train.py
import argparse import datetime import logging import math import random import time import torch from os import path as osp from basicsr.data import create_dataloader, create_dataset from basicsr.data.data_sampler import EnlargedSampler from basicsr.data.prefetch_dataloader import CPUPrefetcher, CUDAPrefetcher from b...
python
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/version.py
restormer/basicsr/version.py
# GENERATED VERSION FILE # TIME: Sun Sep 25 08:32:49 2022 __version__ = '1.2.0+733ceb2' short_version = '1.2.0' version_info = (1, 2, 0)
python
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/test.py
restormer/basicsr/test.py
import logging import torch from os import path as osp from basicsr.data import create_dataloader, create_dataset from basicsr.models import create_model from basicsr.train import parse_options from basicsr.utils import (get_env_info, get_root_logger, get_time_str, make_exp_dirs) from basics...
python
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/metrics/metric_util.py
restormer/basicsr/metrics/metric_util.py
import numpy as np from basicsr.utils.matlab_functions import bgr2ycbcr def reorder_image(img, input_order='HWC'): """Reorder images to 'HWC' order. If the input_order is (h, w), return (h, w, 1); If the input_order is (c, h, w), return (h, w, c); If the input_order is (h, w, c), return as it is. ...
python
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/metrics/fid.py
restormer/basicsr/metrics/fid.py
import numpy as np import torch import torch.nn as nn from scipy import linalg from tqdm import tqdm from basicsr.models.archs.inception import InceptionV3 def load_patched_inception_v3(device='cuda', resize_input=True, normalize_input=False): # we may ...
python
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/metrics/niqe.py
restormer/basicsr/metrics/niqe.py
import cv2 import math import numpy as np from scipy.ndimage.filters import convolve from scipy.special import gamma from basicsr.metrics.metric_util import reorder_image, to_y_channel def estimate_aggd_param(block): """Estimate AGGD (Asymmetric Generalized Gaussian Distribution) paramters. Args: bl...
python
Apache-2.0
89cbfc88a337344d6dee76278c96e033ec38d5c6
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false
zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/metrics/__init__.py
restormer/basicsr/metrics/__init__.py
from .niqe import calculate_niqe from .psnr_ssim import calculate_psnr, calculate_ssim __all__ = ['calculate_psnr', 'calculate_ssim', 'calculate_niqe']
python
Apache-2.0
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/metrics/psnr_ssim.py
restormer/basicsr/metrics/psnr_ssim.py
import cv2 import numpy as np from basicsr.metrics.metric_util import reorder_image, to_y_channel import skimage.metrics import torch def calculate_psnr(img1, img2, crop_border, input_order='HWC', test_y_channel=False): """Calculate PSNR...
python
Apache-2.0
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/models/base_model.py
restormer/basicsr/models/base_model.py
import logging import os import torch from collections import OrderedDict from copy import deepcopy from torch.nn.parallel import DataParallel, DistributedDataParallel from basicsr.models import lr_scheduler as lr_scheduler from basicsr.utils.dist_util import master_only logger = logging.getLogger('basicsr') class ...
python
Apache-2.0
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/models/cat_model.py
restormer/basicsr/models/cat_model.py
import importlib import torch from collections import OrderedDict from copy import deepcopy from os import path as osp from tqdm import tqdm from basicsr.models.archs import define_network from basicsr.models.base_model import BaseModel from basicsr.utils import get_root_logger, imwrite, tensor2img loss_module = impo...
python
Apache-2.0
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/models/__init__.py
restormer/basicsr/models/__init__.py
import importlib from os import path as osp from basicsr.utils import get_root_logger, scandir # automatically scan and import model modules # scan all the files under the 'models' folder and collect files ending with # '_model.py' model_folder = osp.dirname(osp.abspath(__file__)) model_filenames = [ osp.splitext...
python
Apache-2.0
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/models/lr_scheduler.py
restormer/basicsr/models/lr_scheduler.py
import math from collections import Counter from torch.optim.lr_scheduler import _LRScheduler import torch class MultiStepRestartLR(_LRScheduler): """ MultiStep with restarts learning rate scheme. Args: optimizer (torch.nn.optimizer): Torch optimizer. milestones (list): Iterations that will d...
python
Apache-2.0
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/models/losses/loss_util.py
restormer/basicsr/models/losses/loss_util.py
import functools from torch.nn import functional as F def reduce_loss(loss, reduction): """Reduce loss as specified. Args: loss (Tensor): Elementwise loss tensor. reduction (str): Options are 'none', 'mean' and 'sum'. Returns: Tensor: Reduced loss tensor. """ reduction_en...
python
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/models/losses/losses.py
restormer/basicsr/models/losses/losses.py
import torch from torch import nn as nn from torch.nn import functional as F import numpy as np from basicsr.models.losses.loss_util import weighted_loss _reduction_modes = ['none', 'mean', 'sum'] @weighted_loss def l1_loss(pred, target): return F.l1_loss(pred, target, reduction='none') @weighted_loss def mse...
python
Apache-2.0
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/models/losses/__init__.py
restormer/basicsr/models/losses/__init__.py
from .losses import (L1Loss, MSELoss, PSNRLoss, CharbonnierLoss) __all__ = [ 'L1Loss', 'MSELoss', 'PSNRLoss', 'CharbonnierLoss', ]
python
Apache-2.0
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/models/archs/__init__.py
restormer/basicsr/models/archs/__init__.py
import importlib from os import path as osp from basicsr.utils import scandir # automatically scan and import arch modules # scan all the files under the 'archs' folder and collect files ending with # '_arch.py' arch_folder = osp.dirname(osp.abspath(__file__)) arch_filenames = [ osp.splitext(osp.basename(v))[0] f...
python
Apache-2.0
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/models/archs/arch_util.py
restormer/basicsr/models/archs/arch_util.py
import math import torch from torch import nn as nn from torch.nn import functional as F from torch.nn import init as init from torch.nn.modules.batchnorm import _BatchNorm from basicsr.utils import get_root_logger # try: # from basicsr.models.ops.dcn import (ModulatedDeformConvPack, # ...
python
Apache-2.0
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/models/archs/cat_unet_arch.py
restormer/basicsr/models/archs/cat_unet_arch.py
import torch import torch.nn as nn from timm.models.layers import DropPath from einops import rearrange def img2windows(img, H_sp, W_sp): """ Input: Image (B, C, H, W) Output: Window Partition (B', N, C) """ B, C, H, W = img.shape img_reshape = img.view(B, C, H // H_sp, H_sp, W // W_sp, W_sp) ...
python
Apache-2.0
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/utils/matlab_functions.py
restormer/basicsr/utils/matlab_functions.py
import math import numpy as np import torch def cubic(x): """cubic function used for calculate_weights_indices.""" absx = torch.abs(x) absx2 = absx**2 absx3 = absx**3 return (1.5 * absx3 - 2.5 * absx2 + 1) * ( (absx <= 1).type_as(absx)) + (-0.5 * absx3 + 2.5 * absx2 - 4 * absx + ...
python
Apache-2.0
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/utils/img_util.py
restormer/basicsr/utils/img_util.py
import cv2 import math import numpy as np import os import torch from torchvision.utils import make_grid def img2tensor(imgs, bgr2rgb=True, float32=True): """Numpy array to tensor. Args: imgs (list[ndarray] | ndarray): Input images. bgr2rgb (bool): Whether to change bgr to rgb. float3...
python
Apache-2.0
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/utils/face_util.py
restormer/basicsr/utils/face_util.py
import cv2 import numpy as np import os import torch from skimage import transform as trans from basicsr.utils import imwrite try: import dlib except ImportError: print('Please install dlib before testing face restoration.' 'Reference: https://github.com/davisking/dlib') class FaceRestorationHelpe...
python
Apache-2.0
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/utils/logger.py
restormer/basicsr/utils/logger.py
import datetime import logging import time from .dist_util import get_dist_info, master_only initialized_logger = {} class MessageLogger(): """Message logger for printing. Args: opt (dict): Config. It contains the following keys: name (str): Exp name. logger (dict): Contains...
python
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/utils/download_util.py
restormer/basicsr/utils/download_util.py
import math import requests from tqdm import tqdm from .misc import sizeof_fmt def download_file_from_google_drive(file_id, save_path): """Download files from google drive. Ref: https://stackoverflow.com/questions/25010369/wget-curl-large-file-from-google-drive # noqa E501 Args: file_id (s...
python
Apache-2.0
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/utils/lmdb_util.py
restormer/basicsr/utils/lmdb_util.py
import cv2 import lmdb import sys from multiprocessing import Pool from os import path as osp from tqdm import tqdm def make_lmdb_from_imgs(data_path, lmdb_path, img_path_list, keys, batch=5000, com...
python
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/utils/misc.py
restormer/basicsr/utils/misc.py
import numpy as np import os import random import time import torch from os import path as osp from .dist_util import master_only from .logger import get_root_logger def set_random_seed(seed): """Set random seeds.""" random.seed(seed) np.random.seed(seed) torch.manual_seed(seed) torch.cuda.manual...
python
Apache-2.0
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/utils/file_client.py
restormer/basicsr/utils/file_client.py
# Modified from https://github.com/open-mmlab/mmcv/blob/master/mmcv/fileio/file_client.py # noqa: E501 from abc import ABCMeta, abstractmethod class BaseStorageBackend(metaclass=ABCMeta): """Abstract class of storage backends. All backends need to implement two apis: ``get()`` and ``get_text()``. ``get(...
python
Apache-2.0
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/utils/bundle_submissions.py
restormer/basicsr/utils/bundle_submissions.py
# Author: Tobias Plötz, TU Darmstadt (tobias.ploetz@visinf.tu-darmstadt.de) # This file is part of the implementation as described in the CVPR 2017 paper: # Tobias Plötz and Stefan Roth, Benchmarking Denoising Algorithms with Real Photographs. # Please see the file LICENSE.txt for the license governing this code. ...
python
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/utils/__init__.py
restormer/basicsr/utils/__init__.py
from .file_client import FileClient from .img_util import crop_border, imfrombytes, img2tensor, imwrite, tensor2img, padding, padding_DP, imfrombytesDP from .logger import (MessageLogger, get_env_info, get_root_logger, init_tb_logger, init_wandb_logger) from .misc import (check_resume, get_time_str...
python
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/utils/flow_util.py
restormer/basicsr/utils/flow_util.py
# Modified from https://github.com/open-mmlab/mmcv/blob/master/mmcv/video/optflow.py # noqa: E501 import cv2 import numpy as np import os def flowread(flow_path, quantize=False, concat_axis=0, *args, **kwargs): """Read an optical flow map. Args: flow_path (ndarray or str): Flow path. quantiz...
python
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/utils/create_lmdb.py
restormer/basicsr/utils/create_lmdb.py
import argparse from os import path as osp from basicsr.utils import scandir from basicsr.utils.lmdb_util import make_lmdb_from_imgs def prepare_keys(folder_path, suffix='png'): """Prepare image path list and keys for DIV2K dataset. Args: folder_path (str): Folder path. Returns: list[str...
python
Apache-2.0
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/utils/dist_util.py
restormer/basicsr/utils/dist_util.py
# Modified from https://github.com/open-mmlab/mmcv/blob/master/mmcv/runner/dist_utils.py # noqa: E501 import functools import os import subprocess import torch import torch.distributed as dist import torch.multiprocessing as mp def init_dist(launcher, backend='nccl', **kwargs): if mp.get_start_method(allow_none=...
python
Apache-2.0
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/utils/options.py
restormer/basicsr/utils/options.py
import yaml from collections import OrderedDict from os import path as osp def ordered_yaml(): """Support OrderedDict for yaml. Returns: yaml Loader and Dumper. """ try: from yaml import CDumper as Dumper from yaml import CLoader as Loader except ImportError: from ...
python
Apache-2.0
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/data/prefetch_dataloader.py
restormer/basicsr/data/prefetch_dataloader.py
import queue as Queue import threading import torch from torch.utils.data import DataLoader class PrefetchGenerator(threading.Thread): """A general prefetch generator. Ref: https://stackoverflow.com/questions/7323664/python-generator-pre-fetch Args: generator: Python generator. num_p...
python
Apache-2.0
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/data/data_util.py
restormer/basicsr/data/data_util.py
import cv2 cv2.setNumThreads(1) import numpy as np import torch from os import path as osp from torch.nn import functional as F from basicsr.data.transforms import mod_crop from basicsr.utils import img2tensor, scandir def read_img_seq(path, require_mod_crop=False, scale=1): """Read a sequence of images from a g...
python
Apache-2.0
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/data/vimeo90k_dataset.py
restormer/basicsr/data/vimeo90k_dataset.py
import random import torch from pathlib import Path from torch.utils import data as data from basicsr.data.transforms import augment, paired_random_crop from basicsr.utils import FileClient, get_root_logger, imfrombytes, img2tensor class Vimeo90KDataset(data.Dataset): """Vimeo90K dataset for training. The k...
python
Apache-2.0
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/data/video_test_dataset.py
restormer/basicsr/data/video_test_dataset.py
import glob import torch from os import path as osp from torch.utils import data as data from basicsr.data.data_util import (duf_downsample, generate_frame_indices, read_img_seq) from basicsr.utils import get_root_logger, scandir class VideoTestDataset(data.Dataset): """Video ...
python
Apache-2.0
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/data/data_sampler.py
restormer/basicsr/data/data_sampler.py
import math import torch from torch.utils.data.sampler import Sampler class EnlargedSampler(Sampler): """Sampler that restricts data loading to a subset of the dataset. Modified from torch.utils.data.distributed.DistributedSampler Support enlarging the dataset for iteration-based training, for saving ...
python
Apache-2.0
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/data/single_image_dataset.py
restormer/basicsr/data/single_image_dataset.py
from os import path as osp from torch.utils import data as data from torchvision.transforms.functional import normalize from basicsr.data.data_util import paths_from_lmdb from basicsr.utils import FileClient, imfrombytes, img2tensor, scandir class SingleImageDataset(data.Dataset): """Read only lq images in the t...
python
Apache-2.0
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/data/__init__.py
restormer/basicsr/data/__init__.py
import importlib import numpy as np import random import torch import torch.utils.data from functools import partial from os import path as osp from basicsr.data.prefetch_dataloader import PrefetchDataLoader from basicsr.utils import get_root_logger, scandir from basicsr.utils.dist_util import get_dist_info __all__ =...
python
Apache-2.0
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/data/paired_image_dataset.py
restormer/basicsr/data/paired_image_dataset.py
from torch.utils import data as data from torchvision.transforms.functional import normalize from basicsr.data.data_util import (paired_paths_from_folder, paired_DP_paths_from_folder, paired_paths_from_lmdb, pai...
python
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/data/transforms.py
restormer/basicsr/data/transforms.py
import cv2 import random import numpy as np def mod_crop(img, scale): """Mod crop images, used during testing. Args: img (ndarray): Input image. scale (int): Scale factor. Returns: ndarray: Result image. """ img = img.copy() if img.ndim in (2, 3): h, w = img.sh...
python
Apache-2.0
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zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/data/ffhq_dataset.py
restormer/basicsr/data/ffhq_dataset.py
from os import path as osp from torch.utils import data as data from torchvision.transforms.functional import normalize from basicsr.data.transforms import augment from basicsr.utils import FileClient, imfrombytes, img2tensor class FFHQDataset(data.Dataset): """FFHQ dataset for StyleGAN. Args: opt (...
python
Apache-2.0
89cbfc88a337344d6dee76278c96e033ec38d5c6
2026-01-05T07:10:50.865533Z
false
zhengchen1999/CAT
https://github.com/zhengchen1999/CAT/blob/89cbfc88a337344d6dee76278c96e033ec38d5c6/restormer/basicsr/data/reds_dataset.py
restormer/basicsr/data/reds_dataset.py
import numpy as np import random import torch from pathlib import Path from torch.utils import data as data from basicsr.data.transforms import augment, paired_random_crop from basicsr.utils import FileClient, get_root_logger, imfrombytes, img2tensor from basicsr.utils.flow_util import dequantize_flow class REDSData...
python
Apache-2.0
89cbfc88a337344d6dee76278c96e033ec38d5c6
2026-01-05T07:10:50.865533Z
false
ourresearch/openalex-guts
https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/bulk_actions.py
bulk_actions.py
import datetime from app import logger from util import entity_md5 def create_bulk_actions(entity, index_name): bulk_actions = [] my_dict = entity.to_dict() my_dict['updated'] = my_dict.get('updated_date') my_dict['@timestamp'] = datetime.datetime.utcnow().isoformat() new_entity_hash = entity_md...
python
MIT
59706e52ceb84b12427334b046c47b7a6d95c862
2026-01-05T07:10:54.483482Z
false
ourresearch/openalex-guts
https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/util.py
util.py
import datetime import time import unicodedata import shortuuid import sqlalchemy import logging import math import bisect import urllib.parse import re import os import collections import requests import hashlib import heroku3 import json import copy from nameparser import HumanName import string from tenacity impor...
python
MIT
59706e52ceb84b12427334b046c47b7a6d95c862
2026-01-05T07:10:54.483482Z
false
ourresearch/openalex-guts
https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/upsert_mag_records.py
upsert_mag_records.py
from datetime import datetime from sqlalchemy import text from scripts.add_things_queue import enqueue_jobs import redis import shortuuid from app import db, REDIS_QUEUE_URL UPSERT_QUEUE = 'queue:mag_authors_upsert' REDIS = redis.from_url(REDIS_QUEUE_URL) BATCH_SIZE = 100 def make_recordthresher_id(): return s...
python
MIT
59706e52ceb84b12427334b046c47b7a6d95c862
2026-01-05T07:10:54.483482Z
false
ourresearch/openalex-guts
https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/const.py
const.py
PREPRINT_JOURNAL_IDS = {4306401283, 4306402567, 4306507144, 4306402450, 4306401687, 4306402587, 4210203035, 4306401693, 4306400670, 4306401696, 4306401186, 2883122597, 3005989158, 4306402473, 4306402219, 4306400047, 43064023...
python
MIT
59706e52ceb84b12427334b046c47b7a6d95c862
2026-01-05T07:10:54.483482Z
false
ourresearch/openalex-guts
https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/app.py
app.py
from flask import Flask from flask_sqlalchemy import SQLAlchemy from flask_cors import CORS from flask_compress import Compress from flask_debugtoolbar import DebugToolbarExtension import datetime import shortuuid from sqlalchemy import exc, create_engine from sqlalchemy import event from sqlalchemy.pool import NullPo...
python
MIT
59706e52ceb84b12427334b046c47b7a6d95c862
2026-01-05T07:10:54.483482Z
false
ourresearch/openalex-guts
https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/update_retraction_watch.py
scripts/update_retraction_watch.py
# -*- coding: utf-8 -*- DESCRIPTION = """update retraction watch data (https://doi.org/10.13003/c23rw1d9)""" import sys, os, time import io from pathlib import Path from datetime import datetime from timeit import default_timer as timer try: from humanfriendly import format_timespan except ImportError: def ...
python
MIT
59706e52ceb84b12427334b046c47b7a6d95c862
2026-01-05T07:10:54.483482Z
false
ourresearch/openalex-guts
https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/works_magnet_close_outstanding_issues.py
scripts/works_magnet_close_outstanding_issues.py
import pandas as pd import requests import time import os import json from datetime import datetime GITHUB_PAT = os.getenv('GITHUB_PAT') headers = { "Accept": "application/vnd.github+json", "Authorization": f"Bearer {GITHUB_PAT}", "X-GitHub-Api-Version": "2022-11-28" } import gspread from google.oauth2 im...
python
MIT
59706e52ceb84b12427334b046c47b7a6d95c862
2026-01-05T07:10:54.483482Z
false
ourresearch/openalex-guts
https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/modify_redshift_mv.py
scripts/modify_redshift_mv.py
#!/usr/bin/env python3 """ Redshift Materialized View Modification Script --------------------------------------------- This script modifies or refreshes a materialized view in Amazon Redshift Serverless. It can also identify and recreate/refresh all dependent materialized views in the correct order. Usage: pyth...
python
MIT
59706e52ceb84b12427334b046c47b7a6d95c862
2026-01-05T07:10:54.483482Z
false
ourresearch/openalex-guts
https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/datadump_table_updates.py
scripts/datadump_table_updates.py
# coding: utf-8 from sqlalchemy import text from app import db # python -m scripts.datadump_table_updates # date_of_old_release = "20211025" # date_of_new_release = "20211108" date_of_old_release = "20211206" date_of_new_release = "20220102" # rename outs to have the date of the previous release if True: # ...
python
MIT
59706e52ceb84b12427334b046c47b7a6d95c862
2026-01-05T07:10:54.483482Z
false
ourresearch/openalex-guts
https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/log_works_per_day.py
scripts/log_works_per_day.py
import datetime import os import requests from app import db, logger from sqlalchemy import text def send_email(to_address, subject, body): mailgun_api_key = os.getenv('MAILGUN_API_KEY') mailgun_url = f"https://api.mailgun.net/v3/ourresearch.org/messages" mailgun_auth = ("api", mailgun_api_key) mailgu...
python
MIT
59706e52ceb84b12427334b046c47b7a6d95c862
2026-01-05T07:10:54.483482Z
false
ourresearch/openalex-guts
https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/handle_duplicates.py
scripts/handle_duplicates.py
import pandas as pd import requests def get_paper_details(paper_ids): formatted_paper_ids = '|'.join([f'W{paper_id}' for paper_id in paper_ids]) url = f'https://api.openalex.org/works?filter=ids.openalex:{formatted_paper_ids}&select=id,ids,locations,authorships&mailto=team@ourresearch.org' data = requests...
python
MIT
59706e52ceb84b12427334b046c47b7a6d95c862
2026-01-05T07:10:54.483482Z
false
ourresearch/openalex-guts
https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/export_affiliations.py
scripts/export_affiliations.py
import logging import os import subprocess import time """ Run with: heroku local:run python -- -m scripts.export_affiliations """ logger = logging.getLogger(__name__) postgres_db_url = os.getenv("POSTGRES_URL") def export_postgres_to_s3(query, s3_key, chunk_size): """execute the query in chunks and copy the ou...
python
MIT
59706e52ceb84b12427334b046c47b7a6d95c862
2026-01-05T07:10:54.483482Z
false
ourresearch/openalex-guts
https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/ingest_entity_curation_requests.py
scripts/ingest_entity_curation_requests.py
import json import os import re from datetime import datetime import argparse import gspread import heroku3 import pandas as pd import requests from google.oauth2 import service_account from googleapiclient.discovery import build from psycopg2 import IntegrityError from sqlalchemy.orm import sessionmaker from app imp...
python
MIT
59706e52ceb84b12427334b046c47b7a6d95c862
2026-01-05T07:10:54.483482Z
false
ourresearch/openalex-guts
https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/redshift_test.py
scripts/redshift_test.py
import argparse import os import logging import glob import re import psycopg2 # Set up logging logger = logging.getLogger(__name__) logging.basicConfig(level=logging.INFO, format='%(asctime)s - %(levelname)s - %(message)s') # Get Redshift connection details from environment variables redshift_db_url = os.getenv("RED...
python
MIT
59706e52ceb84b12427334b046c47b7a6d95c862
2026-01-05T07:10:54.483482Z
false
ourresearch/openalex-guts
https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/works_magnet_auto_approver.py
scripts/works_magnet_auto_approver.py
import json import boto3 import os import botocore import psycopg2 from openai import OpenAI from pydantic import BaseModel openai_api_key = os.getenv("OPENAI_API_KEY") AWS_ACCESS_KEY_ID = os.getenv("AWS_SAGEMAKER_ACCOUNT_KEY") AWS_SECRET_ACCESS_KEY = os.getenv("AWS_SAGEMAKER_ACCOUNT_SECRET") def connect_to_db(): ...
python
MIT
59706e52ceb84b12427334b046c47b7a6d95c862
2026-01-05T07:10:54.483482Z
false
ourresearch/openalex-guts
https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/save_openapc.py
scripts/save_openapc.py
import codecs import csv from currency_converter import CurrencyConverter import requests from sqlalchemy.sql import text from app import db from models.work_openapc import WorkOpenAPC """ Ingest data from OpenAPC (https://github.com/OpenAPC/openapc-de) into the mid.work_openapc table. run with: python -m scripts.s...
python
MIT
59706e52ceb84b12427334b046c47b7a6d95c862
2026-01-05T07:10:54.483482Z
false
ourresearch/openalex-guts
https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/journal_issn_util.py
scripts/journal_issn_util.py
import os from argparse import ArgumentParser import heroku3 from sqlalchemy import text from .add_things_queue import enqueue_jobs from app import db from models import Source def fast_store_source(source_id, heroku_conn=None): if not heroku_conn: heroku_conn = heroku3.from_key(os.environ.get("HEROKU_A...
python
MIT
59706e52ceb84b12427334b046c47b7a6d95c862
2026-01-05T07:10:54.483482Z
false
ourresearch/openalex-guts
https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/copy_s3_to_postgres.py
scripts/copy_s3_to_postgres.py
import argparse from os import getenv from contextlib import contextmanager import psycopg2 import psycopg2.extras from urllib.parse import urlparse from time import time from util import elapsed # python -m scripts.copy_s3_to_postgres mid.work_extra_ids postgres_url = urlparse(getenv("POSTGRES_URL")) def new_postg...
python
MIT
59706e52ceb84b12427334b046c47b7a6d95c862
2026-01-05T07:10:54.483482Z
false
ourresearch/openalex-guts
https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/queue_make_parseland_rt_records.py
scripts/queue_make_parseland_rt_records.py
import argparse import datetime import hashlib import json import uuid from multiprocessing import Pool from time import sleep, time import requests import shortuuid from sqlalchemy import text from sqlalchemy.dialects.postgresql import insert from app import db from app import logger from models import Record from u...
python
MIT
59706e52ceb84b12427334b046c47b7a6d95c862
2026-01-05T07:10:54.483482Z
false
ourresearch/openalex-guts
https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/queue_work_update_authors.py
scripts/queue_work_update_authors.py
import argparse import json from time import sleep from time import time from sqlalchemy import orm from sqlalchemy import text from sqlalchemy.orm import selectinload import models from app import db from app import logger from util import elapsed def update_authors(work): if work.affiliation_records_sorted: ...
python
MIT
59706e52ceb84b12427334b046c47b7a6d95c862
2026-01-05T07:10:54.483482Z
false
ourresearch/openalex-guts
https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/import_ror.py
scripts/import_ror.py
# coding: utf-8 # old # # from sqlalchemy.dialects.postgresql import JSONB # from sqlalchemy.sql import text # from executor import execute # import requests # from time import time # from time import sleep # import datetime # import shortuuid # from urllib import quote # import os # import re # import simplejson as j...
python
MIT
59706e52ceb84b12427334b046c47b7a6d95c862
2026-01-05T07:10:54.483482Z
false
ourresearch/openalex-guts
https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/concat_s3_files.py
scripts/concat_s3_files.py
import tempfile import argparse import concurrent.futures import re from collections import defaultdict from functools import partial from os import getenv import io import boto import boto3 from s3_concat import MultipartUploadJob from s3_concat import S3Concat from s3_concat.utils import _threads, _chunk_by_size, MI...
python
MIT
59706e52ceb84b12427334b046c47b7a6d95c862
2026-01-05T07:10:54.483482Z
false
ourresearch/openalex-guts
https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/merge.py
scripts/merge.py
import argparse from sqlalchemy import orm from sqlalchemy.orm import selectinload from os import getenv from urllib.parse import urlparse from time import time import datetime import sys import models from app import db from merge.merge_institution import process_institution as merge_one_institution from util import...
python
MIT
59706e52ceb84b12427334b046c47b7a6d95c862
2026-01-05T07:10:54.483482Z
false
ourresearch/openalex-guts
https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/queue_work_process_sdgs.py
scripts/queue_work_process_sdgs.py
import argparse import json from time import sleep from time import time import random import requests from sqlalchemy import orm from sqlalchemy import text from sqlalchemy.orm import selectinload import models from app import db, logger, SDG_CLASSIFIER_URL from util import elapsed """ Run with: heroku local:run py...
python
MIT
59706e52ceb84b12427334b046c47b7a6d95c862
2026-01-05T07:10:54.483482Z
false
ourresearch/openalex-guts
https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/clean_elastic_deleted_docs.py
scripts/clean_elastic_deleted_docs.py
import time from elasticsearch import Elasticsearch from app import ELASTIC_URL es = Elasticsearch([ELASTIC_URL]) """" Run daily to clean up deleted documents in ElasticSearch. Command is: heroku local:run -- python -m scripts.clean_elastic_deleted_docs """ response = es.cat.indices(format='json', h='index,docs.dele...
python
MIT
59706e52ceb84b12427334b046c47b7a6d95c862
2026-01-05T07:10:54.483482Z
false
ourresearch/openalex-guts
https://github.com/ourresearch/openalex-guts/blob/59706e52ceb84b12427334b046c47b7a6d95c862/scripts/queue_work_add_everything.py
scripts/queue_work_add_everything.py
import argparse import logging import re from time import sleep, time, mktime, gmtime from timeit import default_timer as timer from humanfriendly import format_timespan from redis import Redis from redis.exceptions import ConnectionError from sqlalchemy import text from tenacity import retry, wait_fixed, stop_after_a...
python
MIT
59706e52ceb84b12427334b046c47b7a6d95c862
2026-01-05T07:10:54.483482Z
false