Tutorial2/NeuroML2/hhneuron.cell.nml

<?xml version="1.0" encoding="UTF-8"?>

<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"
         xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2  https://raw.githubusercontent.com/NeuroML/NeuroML2/master/Schemas/NeuroML2/NeuroML_v2beta3.xsd"   
         id="hhneuron">

    <include href="passiveChan.channel.nml"/> <!-- Include the channel definitions -->
    <include href="naChan.channel.nml"/>
    <include href="kChan.channel.nml"/>

    <cell id="hhneuron">
        
        <notes>Standard Hodgkin Huxley model cell with Na, K and passive conductances</notes>

        <morphology id="morph1">
            <segment id="0" name="soma">
                <proximal x="0" y="0" z="0" diameter="5.6419"/> <!--Gives a convenient surface area of 100.0 um^2-->
                <distal x="0" y="0" z="0" diameter="5.6419"/>
            </segment>

            <segmentGroup id="soma_group">
                <member segment="0"/>
            </segmentGroup>

        </morphology>

        <biophysicalProperties id="biophysics">

            <membraneProperties>
                        
                <channelDensity id="leak" ionChannel="passiveChan" condDensity="0.0003 S_per_cm2" erev="-54.3mV" ion="non_specific"/>
                <channelDensity id="naChans" ionChannel="naChan" condDensity="0.12 S_per_cm2" erev="63.543396 mV" ion="na"/>
                <channelDensity id="kChans" ionChannel="kChan" condDensity="0.036 S_per_cm2" erev="-74.162211mV" ion="k"/>

                <spikeThresh value="-20mV"/>
                <specificCapacitance value="1.0 uF_per_cm2"/>
                <initMembPotential value="-63.77mV"/>

            </membraneProperties>

            <intracellularProperties>
                <resistivity value="0.03 kohm_cm"/>   <!-- Note: not used in single compartment simulations -->
            </intracellularProperties>

        </biophysicalProperties>

    </cell>


</neuroml>