metadata
title: Virtual Gene Scope v2.0
emoji: 🧬
colorFrom: purple
colorTo: blue
sdk: docker
app_port: 8501
pinned: false
license: apache-2.0
tags:
- streamlit
- nursing
- genomics
- alphagenome
- pharmacogenomics
- uk-nursing
- nmc
🧬 Virtual Gene Scope v2.0
Explore the Regulatory Genome with Google DeepMind's AlphaGenome.
An educational tool for nursing students and healthcare professionals to visualise how non-coding genetic variants affect gene regulation — covering expression, splicing, chromatin accessibility, and contact maps.
Built by nurses who code. For nurses who care about genomics. Part of the CQAI Nursing Education Toolkit
⚕️ Clinical Disclaimer
This tool is for educational purposes only. It does not make clinical decisions and must not be used for patient care without independent verification by qualified healthcare professionals.
✨ Features
- 🏥 Disease Risk Mode — Explore pathogenic variants in 8 disease-associated genes
- 💊 Drug Response Mode (PGx) — See how variants affect drug metabolism (8 PGx genes)
- 🧪 Custom Variant Mode — Input any variant and see predicted effects
- 🫀 Tissue Context — Select from 10 tissue types with UBERON ontology terms
- 📊 Multi-modal Demo Tracks — RNA expression, splicing, chromatin accessibility
- 👩⚕️ Nursing Reference Cards — NMC-aligned clinical guidance per gene
- 📎 DOCX Report Export — Download a formatted gene analysis report
- 🔗 ClinVar / PharmGKB / OMIM links — Direct links to authoritative databases
- 🎓 NMC Proficiency Map — Standards of Proficiency alignment per gene