Adds note about how to access the DNA replicate data
#6
by hlapp - opened
README.md
CHANGED
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@@ -62,6 +62,8 @@ The K562 and A549 STARR-seq data that were used for training are available from
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- A549-DMSO: [ENCSR005XEA](https://www.encodeproject.org/functional-characterization-experiments/ENCSR005XEA/)
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- A549-DEX: [ENCSR459NUS](https://www.encodeproject.org/functional-characterization-experiments/ENCSR459NUS/)
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### Preprocessing
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The data-preprocessing steps from FASTQ or BigWig files are enumerated at the [BlueSTARR code repository](https://github.com/Duke-IGVF/BlueSTARR?tab=readme-ov-file#preparing-input-data-for-training-bluestarr).
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- A549-DMSO: [ENCSR005XEA](https://www.encodeproject.org/functional-characterization-experiments/ENCSR005XEA/)
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- A549-DEX: [ENCSR459NUS](https://www.encodeproject.org/functional-characterization-experiments/ENCSR459NUS/)
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Note that file downloads under these accessions are the RNA ("output") replicates. The DNA ("input") replicate data are available by following the "Controls" link at each of the accessions.
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### Preprocessing
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The data-preprocessing steps from FASTQ or BigWig files are enumerated at the [BlueSTARR code repository](https://github.com/Duke-IGVF/BlueSTARR?tab=readme-ov-file#preparing-input-data-for-training-bluestarr).
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