metadata
dataset_info:
- config_name: cells
features:
- name: name
dtype: string
- name: tissue
dtype: string
- name: top_expressed_genes
dtype: string
- name: top_expressed_pathways
dtype: string
- name: genetic_dependencies
dtype: string
- name: description
dtype: string
splits:
- name: cells
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- config_name: genes
features:
- name: gene
dtype: string
- name: uniprot_id
dtype: string
- name: protein_name
dtype: string
- name: protein_function
dtype: string
- name: protein_domains
list: string
- name: protein_interactions
list: string
- name: pathways
list: string
- name: go_mf
list: string
- name: go_bp
list: string
- name: go_cc
list: string
- name: subcellular_location
dtype: string
- name: is_essential
dtype: bool
- name: important_pathways
list: string
splits:
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- config_name: pathways
features:
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dtype: string
- name: genes
list: string
- name: brief_description
dtype: string
splits:
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dataset_size: 303872877
- config_name: reasoning_kaufman
features:
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- name: protein_target
dtype: large_string
- name: cell_type
dtype: large_string
- name: tissue_type
dtype: large_string
- name: stimulation
dtype: large_string
- name: pathway_name
dtype: large_string
- name: pathway_change
dtype: large_string
- name: pathway_score
dtype: float64
- name: experiment
dtype: large_string
- name: cell_file
dtype: large_string
splits:
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- name: validation
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- name: test
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dataset_size: 3918826247
- config_name: reasoning_marson
features:
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dtype: large_string
- name: protein_target
dtype: large_string
- name: cell_type
dtype: large_string
- name: tissue_type
dtype: large_string
- name: stimulation
dtype: large_string
- name: pathway_name
dtype: large_string
- name: pathway_change
dtype: large_string
- name: pathway_score
dtype: float64
- name: experiment
dtype: large_string
- name: cell_file
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- name: donor_id
dtype: large_string
splits:
- name: train
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- name: validation
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- name: test
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download_size: 658993353
dataset_size: 13660175962
- config_name: reasoning_nadig_replogle_new
features:
- name: gene_target
dtype: string
- name: protein_target
dtype: string
- name: cell_type
dtype: string
- name: tissue_type
dtype: string
- name: pathway_name
dtype: string
- name: pathway_change
dtype: string
- name: pathway_score
dtype: float64
- name: experiment
dtype: string
- name: cell_file
dtype: string
- name: is_essential
dtype: bool
- name: is_offtarget
dtype: bool
splits:
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- name: test
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download_size: 28379155
dataset_size: 655055631
- config_name: reasoning_norman
features:
- name: gene_target
list: string
- name: protein_target
list: string
- name: cell_type
dtype: string
- name: tissue_type
dtype: string
- name: stimulation
dtype: string
- name: pathway_name
dtype: string
- name: pathway_change
dtype: string
- name: pathway_score
dtype: float64
- name: experiment
dtype: string
- name: cell_file
dtype: string
splits:
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- name: validation
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- name: test
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dataset_size: 493895785
- config_name: reasoning_papalexi2021
features:
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dtype: string
- name: protein_target
dtype: string
- name: cell_type
dtype: string
- name: tissue_type
dtype: string
- name: pathway_name
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- name: pathway_change
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- name: pathway_score
dtype: float64
- name: experiment
dtype: string
- name: cell_file
dtype: string
splits:
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- name: validation
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num_examples: 16571
- name: test
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num_examples: 16588
download_size: 2657990
dataset_size: 43857983
configs:
- config_name: cells
data_files:
- split: cells
path: cells/cells-*
- config_name: genes
data_files:
- split: genes
path: genes/genes-*
- config_name: pathways
data_files:
- split: pathways
path: pathways/pathways-*
- config_name: reasoning_kaufman
data_files:
- split: train
path: reasoning_kaufman/train-*
- split: validation
path: reasoning_kaufman/validation-*
- split: test
path: reasoning_kaufman/test-*
- config_name: reasoning_marson
data_files:
- split: train
path: reasoning_marson/train-*
- split: validation
path: reasoning_marson/validation-*
- split: test
path: reasoning_marson/test-*
- config_name: reasoning_nadig_replogle_new
data_files:
- split: train
path: reasoning_nadig_replogle_new/train-*
- split: test
path: reasoning_nadig_replogle_new/test-*
- config_name: reasoning_nadig_replogle_new_offtarget_filtered
data_files:
- split: train
path: reasoning_nadig_replogle_new_offtarget_filtered/train-*
- split: test
path: reasoning_nadig_replogle_new_offtarget_filtered/test-*
- config_name: reasoning_norman
data_files:
- split: train
path: reasoning_norman/train-*
- split: validation
path: reasoning_norman/validation-*
- split: test
path: reasoning_norman/test-*
- config_name: reasoning_papalexi2021
data_files:
- split: train
path: reasoning_papalexi2021/train-*
- split: validation
path: reasoning_papalexi2021/validation-*
- split: test
path: reasoning_papalexi2021/test-*