repository_name stringlengths 5 67 | func_path_in_repository stringlengths 4 234 | func_name stringlengths 0 314 | whole_func_string stringlengths 52 3.87M | language stringclasses 6
values | func_code_string stringlengths 39 1.84M | func_code_tokens sequencelengths 15 672k | func_documentation_string stringlengths 1 47.2k | func_documentation_tokens sequencelengths 1 3.92k | split_name stringclasses 1
value | func_code_url stringlengths 85 339 |
|---|---|---|---|---|---|---|---|---|---|---|
gem/oq-engine | openquake/calculators/export/hazard.py | export_ruptures_csv | def export_ruptures_csv(ekey, dstore):
"""
:param ekey: export key, i.e. a pair (datastore key, fmt)
:param dstore: datastore object
"""
oq = dstore['oqparam']
if 'scenario' in oq.calculation_mode:
return []
dest = dstore.export_path('ruptures.csv')
header = ('rupid multiplicity ... | python | def export_ruptures_csv(ekey, dstore):
oq = dstore['oqparam']
if 'scenario' in oq.calculation_mode:
return []
dest = dstore.export_path('ruptures.csv')
header = ('rupid multiplicity mag centroid_lon centroid_lat '
'centroid_depth trt strike dip rake boundary').split()
rows... | [
"def",
"export_ruptures_csv",
"(",
"ekey",
",",
"dstore",
")",
":",
"oq",
"=",
"dstore",
"[",
"'oqparam'",
"]",
"if",
"'scenario'",
"in",
"oq",
".",
"calculation_mode",
":",
"return",
"[",
"]",
"dest",
"=",
"dstore",
".",
"export_path",
"(",
"'ruptures.csv... | :param ekey: export key, i.e. a pair (datastore key, fmt)
:param dstore: datastore object | [
":",
"param",
"ekey",
":",
"export",
"key",
"i",
".",
"e",
".",
"a",
"pair",
"(",
"datastore",
"key",
"fmt",
")",
":",
"param",
"dstore",
":",
"datastore",
"object"
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/calculators/export/hazard.py#L81-L106 |
gem/oq-engine | openquake/calculators/export/hazard.py | export_hmaps_csv | def export_hmaps_csv(key, dest, sitemesh, array, comment):
"""
Export the hazard maps of the given realization into CSV.
:param key: output_type and export_type
:param dest: name of the exported file
:param sitemesh: site collection
:param array: a composite array of dtype hmap_dt
:param co... | python | def export_hmaps_csv(key, dest, sitemesh, array, comment):
curves = util.compose_arrays(sitemesh, array)
writers.write_csv(dest, curves, comment=comment)
return [dest] | [
"def",
"export_hmaps_csv",
"(",
"key",
",",
"dest",
",",
"sitemesh",
",",
"array",
",",
"comment",
")",
":",
"curves",
"=",
"util",
".",
"compose_arrays",
"(",
"sitemesh",
",",
"array",
")",
"writers",
".",
"write_csv",
"(",
"dest",
",",
"curves",
",",
... | Export the hazard maps of the given realization into CSV.
:param key: output_type and export_type
:param dest: name of the exported file
:param sitemesh: site collection
:param array: a composite array of dtype hmap_dt
:param comment: comment to use as header of the exported CSV file | [
"Export",
"the",
"hazard",
"maps",
"of",
"the",
"given",
"realization",
"into",
"CSV",
"."
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/calculators/export/hazard.py#L223-L235 |
gem/oq-engine | openquake/calculators/export/hazard.py | add_imt | def add_imt(fname, imt):
"""
>>> add_imt('/path/to/hcurve_23.csv', 'SA(0.1)')
'/path/to/hcurve-SA(0.1)_23.csv'
"""
name = os.path.basename(fname)
newname = re.sub(r'(_\d+\.)', '-%s\\1' % imt, name)
return os.path.join(os.path.dirname(fname), newname) | python | def add_imt(fname, imt):
name = os.path.basename(fname)
newname = re.sub(r'(_\d+\.)', '-%s\\1' % imt, name)
return os.path.join(os.path.dirname(fname), newname) | [
"def",
"add_imt",
"(",
"fname",
",",
"imt",
")",
":",
"name",
"=",
"os",
".",
"path",
".",
"basename",
"(",
"fname",
")",
"newname",
"=",
"re",
".",
"sub",
"(",
"r'(_\\d+\\.)'",
",",
"'-%s\\\\1'",
"%",
"imt",
",",
"name",
")",
"return",
"os",
".",
... | >>> add_imt('/path/to/hcurve_23.csv', 'SA(0.1)')
'/path/to/hcurve-SA(0.1)_23.csv' | [
">>>",
"add_imt",
"(",
"/",
"path",
"/",
"to",
"/",
"hcurve_23",
".",
"csv",
"SA",
"(",
"0",
".",
"1",
")",
")",
"/",
"path",
"/",
"to",
"/",
"hcurve",
"-",
"SA",
"(",
"0",
".",
"1",
")",
"_23",
".",
"csv"
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/calculators/export/hazard.py#L238-L245 |
gem/oq-engine | openquake/calculators/export/hazard.py | export_hcurves_by_imt_csv | def export_hcurves_by_imt_csv(
key, kind, rlzs_assoc, fname, sitecol, array, oq, checksum):
"""
Export the curves of the given realization into CSV.
:param key: output_type and export_type
:param kind: a string with the kind of output (realization or statistics)
:param rlzs_assoc: a :class:... | python | def export_hcurves_by_imt_csv(
key, kind, rlzs_assoc, fname, sitecol, array, oq, checksum):
nsites = len(sitecol)
fnames = []
for imt, imls in oq.imtls.items():
slc = oq.imtls(imt)
dest = add_imt(fname, imt)
lst = [('lon', F32), ('lat', F32), ('depth', F32)]
for ... | [
"def",
"export_hcurves_by_imt_csv",
"(",
"key",
",",
"kind",
",",
"rlzs_assoc",
",",
"fname",
",",
"sitecol",
",",
"array",
",",
"oq",
",",
"checksum",
")",
":",
"nsites",
"=",
"len",
"(",
"sitecol",
")",
"fnames",
"=",
"[",
"]",
"for",
"imt",
",",
"... | Export the curves of the given realization into CSV.
:param key: output_type and export_type
:param kind: a string with the kind of output (realization or statistics)
:param rlzs_assoc: a :class:`openquake.commonlib.source.RlzsAssoc` instance
:param fname: name of the exported file
:param sitecol: ... | [
"Export",
"the",
"curves",
"of",
"the",
"given",
"realization",
"into",
"CSV",
"."
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/calculators/export/hazard.py#L248-L277 |
gem/oq-engine | openquake/calculators/export/hazard.py | hazard_curve_name | def hazard_curve_name(dstore, ekey, kind, rlzs_assoc):
"""
:param calc_id: the calculation ID
:param ekey: the export key
:param kind: the kind of key
:param rlzs_assoc: a RlzsAssoc instance
"""
key, fmt = ekey
prefix = {'hcurves': 'hazard_curve', 'hmaps': 'hazard_map',
'uh... | python | def hazard_curve_name(dstore, ekey, kind, rlzs_assoc):
key, fmt = ekey
prefix = {'hcurves': 'hazard_curve', 'hmaps': 'hazard_map',
'uhs': 'hazard_uhs'}[key]
if kind.startswith('quantile-'):
fname = dstore.build_fname('quantile_' + prefix[7:], kind[9:], fmt)
else:
fna... | [
"def",
"hazard_curve_name",
"(",
"dstore",
",",
"ekey",
",",
"kind",
",",
"rlzs_assoc",
")",
":",
"key",
",",
"fmt",
"=",
"ekey",
"prefix",
"=",
"{",
"'hcurves'",
":",
"'hazard_curve'",
",",
"'hmaps'",
":",
"'hazard_map'",
",",
"'uhs'",
":",
"'hazard_uhs'"... | :param calc_id: the calculation ID
:param ekey: the export key
:param kind: the kind of key
:param rlzs_assoc: a RlzsAssoc instance | [
":",
"param",
"calc_id",
":",
"the",
"calculation",
"ID",
":",
"param",
"ekey",
":",
"the",
"export",
"key",
":",
"param",
"kind",
":",
"the",
"kind",
"of",
"key",
":",
"param",
"rlzs_assoc",
":",
"a",
"RlzsAssoc",
"instance"
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/calculators/export/hazard.py#L280-L294 |
gem/oq-engine | openquake/calculators/export/hazard.py | get_kkf | def get_kkf(ekey):
"""
:param ekey: export key, for instance ('uhs/rlz-1', 'xml')
:returns: key, kind and fmt from the export key, i.e. 'uhs', 'rlz-1', 'xml'
"""
key, fmt = ekey
if '/' in key:
key, kind = key.split('/', 1)
else:
kind = ''
return key, kind, fmt | python | def get_kkf(ekey):
key, fmt = ekey
if '/' in key:
key, kind = key.split('/', 1)
else:
kind = ''
return key, kind, fmt | [
"def",
"get_kkf",
"(",
"ekey",
")",
":",
"key",
",",
"fmt",
"=",
"ekey",
"if",
"'/'",
"in",
"key",
":",
"key",
",",
"kind",
"=",
"key",
".",
"split",
"(",
"'/'",
",",
"1",
")",
"else",
":",
"kind",
"=",
"''",
"return",
"key",
",",
"kind",
","... | :param ekey: export key, for instance ('uhs/rlz-1', 'xml')
:returns: key, kind and fmt from the export key, i.e. 'uhs', 'rlz-1', 'xml' | [
":",
"param",
"ekey",
":",
"export",
"key",
"for",
"instance",
"(",
"uhs",
"/",
"rlz",
"-",
"1",
"xml",
")",
":",
"returns",
":",
"key",
"kind",
"and",
"fmt",
"from",
"the",
"export",
"key",
"i",
".",
"e",
".",
"uhs",
"rlz",
"-",
"1",
"xml"
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/calculators/export/hazard.py#L319-L329 |
gem/oq-engine | openquake/calculators/export/hazard.py | export_hcurves_csv | def export_hcurves_csv(ekey, dstore):
"""
Exports the hazard curves into several .csv files
:param ekey: export key, i.e. a pair (datastore key, fmt)
:param dstore: datastore object
"""
oq = dstore['oqparam']
info = get_info(dstore)
rlzs_assoc = dstore['csm_info'].get_rlzs_assoc()
R... | python | def export_hcurves_csv(ekey, dstore):
oq = dstore['oqparam']
info = get_info(dstore)
rlzs_assoc = dstore['csm_info'].get_rlzs_assoc()
R = len(rlzs_assoc.realizations)
sitecol = dstore['sitecol']
sitemesh = get_mesh(sitecol)
key, kind, fmt = get_kkf(ekey)
fnames = []
checksum = d... | [
"def",
"export_hcurves_csv",
"(",
"ekey",
",",
"dstore",
")",
":",
"oq",
"=",
"dstore",
"[",
"'oqparam'",
"]",
"info",
"=",
"get_info",
"(",
"dstore",
")",
"rlzs_assoc",
"=",
"dstore",
"[",
"'csm_info'",
"]",
".",
"get_rlzs_assoc",
"(",
")",
"R",
"=",
... | Exports the hazard curves into several .csv files
:param ekey: export key, i.e. a pair (datastore key, fmt)
:param dstore: datastore object | [
"Exports",
"the",
"hazard",
"curves",
"into",
"several",
".",
"csv",
"files"
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/calculators/export/hazard.py#L333-L373 |
gem/oq-engine | openquake/calculators/export/hazard.py | get_metadata | def get_metadata(realizations, kind):
"""
:param list realizations:
realization objects
:param str kind:
kind of data, i.e. a key in the datastore
:returns:
a dictionary with smlt_path, gsimlt_path, statistics, quantile_value
"""
metadata = {}
if kind.startswith('rlz-... | python | def get_metadata(realizations, kind):
metadata = {}
if kind.startswith('rlz-'):
rlz = realizations[int(kind[4:])]
metadata['smlt_path'] = '_'.join(rlz.sm_lt_path)
metadata['gsimlt_path'] = rlz.gsim_rlz.uid
elif kind.startswith('quantile-'):
metadata['statistics'] = 'quan... | [
"def",
"get_metadata",
"(",
"realizations",
",",
"kind",
")",
":",
"metadata",
"=",
"{",
"}",
"if",
"kind",
".",
"startswith",
"(",
"'rlz-'",
")",
":",
"rlz",
"=",
"realizations",
"[",
"int",
"(",
"kind",
"[",
"4",
":",
"]",
")",
"]",
"metadata",
"... | :param list realizations:
realization objects
:param str kind:
kind of data, i.e. a key in the datastore
:returns:
a dictionary with smlt_path, gsimlt_path, statistics, quantile_value | [
":",
"param",
"list",
"realizations",
":",
"realization",
"objects",
":",
"param",
"str",
"kind",
":",
"kind",
"of",
"data",
"i",
".",
"e",
".",
"a",
"key",
"in",
"the",
"datastore",
":",
"returns",
":",
"a",
"dictionary",
"with",
"smlt_path",
"gsimlt_pa... | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/calculators/export/hazard.py#L379-L402 |
gem/oq-engine | openquake/calculators/export/hazard.py | export_gmf | def export_gmf(ekey, dstore):
"""
:param ekey: export key, i.e. a pair (datastore key, fmt)
:param dstore: datastore object
"""
oq = dstore['oqparam']
if not oq.calculation_mode.startswith('scenario'):
return []
sitecol = dstore['sitecol']
investigation_time = (None if oq.calcula... | python | def export_gmf(ekey, dstore):
oq = dstore['oqparam']
if not oq.calculation_mode.startswith('scenario'):
return []
sitecol = dstore['sitecol']
investigation_time = (None if oq.calculation_mode == 'scenario'
else oq.investigation_time)
fmt = ekey[-1]
gmf_data... | [
"def",
"export_gmf",
"(",
"ekey",
",",
"dstore",
")",
":",
"oq",
"=",
"dstore",
"[",
"'oqparam'",
"]",
"if",
"not",
"oq",
".",
"calculation_mode",
".",
"startswith",
"(",
"'scenario'",
")",
":",
"return",
"[",
"]",
"sitecol",
"=",
"dstore",
"[",
"'site... | :param ekey: export key, i.e. a pair (datastore key, fmt)
:param dstore: datastore object | [
":",
"param",
"ekey",
":",
"export",
"key",
"i",
".",
"e",
".",
"a",
"pair",
"(",
"datastore",
"key",
"fmt",
")",
":",
"param",
"dstore",
":",
"datastore",
"object"
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/calculators/export/hazard.py#L535-L563 |
gem/oq-engine | openquake/calculators/export/hazard.py | save_disagg_to_csv | def save_disagg_to_csv(metadata, matrices):
"""
Save disaggregation matrices to multiple .csv files.
"""
skip_keys = ('Mag', 'Dist', 'Lon', 'Lat', 'Eps', 'TRT')
base_header = ','.join(
'%s=%s' % (key, value) for key, value in metadata.items()
if value is not None and key not in skip_... | python | def save_disagg_to_csv(metadata, matrices):
skip_keys = ('Mag', 'Dist', 'Lon', 'Lat', 'Eps', 'TRT')
base_header = ','.join(
'%s=%s' % (key, value) for key, value in metadata.items()
if value is not None and key not in skip_keys)
for disag_tup, (poe, iml, matrix, fname) in matrices.items... | [
"def",
"save_disagg_to_csv",
"(",
"metadata",
",",
"matrices",
")",
":",
"skip_keys",
"=",
"(",
"'Mag'",
",",
"'Dist'",
",",
"'Lon'",
",",
"'Lat'",
",",
"'Eps'",
",",
"'TRT'",
")",
"base_header",
"=",
"','",
".",
"join",
"(",
"'%s=%s'",
"%",
"(",
"key"... | Save disaggregation matrices to multiple .csv files. | [
"Save",
"disaggregation",
"matrices",
"to",
"multiple",
".",
"csv",
"files",
"."
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/calculators/export/hazard.py#L743-L776 |
gem/oq-engine | openquake/hazardlib/gsim/bradley_2013b.py | Bradley2013bChchCBD.get_mean_and_stddevs | def get_mean_and_stddevs(self, sites, rup, dists, imt, stddev_types):
"""
See :meth:`superclass method
<.base.GroundShakingIntensityModel.get_mean_and_stddevs>`
for spec of input and result values.
"""
# extracting dictionary of coefficients specific to required
#... | python | def get_mean_and_stddevs(self, sites, rup, dists, imt, stddev_types):
C = self.COEFFS[imt]
if isinstance(imt, PGA):
imt_per = 0.0
else:
imt_per = imt.period
sites.vs30 = np.array([250])
sites.z1pt0 = np.array([330])
... | [
"def",
"get_mean_and_stddevs",
"(",
"self",
",",
"sites",
",",
"rup",
",",
"dists",
",",
"imt",
",",
"stddev_types",
")",
":",
"# extracting dictionary of coefficients specific to required",
"# intensity measure type.",
"C",
"=",
"self",
".",
"COEFFS",
"[",
"imt",
"... | See :meth:`superclass method
<.base.GroundShakingIntensityModel.get_mean_and_stddevs>`
for spec of input and result values. | [
"See",
":",
"meth",
":",
"superclass",
"method",
"<",
".",
"base",
".",
"GroundShakingIntensityModel",
".",
"get_mean_and_stddevs",
">",
"for",
"spec",
"of",
"input",
"and",
"result",
"values",
"."
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/hazardlib/gsim/bradley_2013b.py#L63-L96 |
gem/oq-engine | openquake/hazardlib/gsim/bradley_2013b.py | Bradley2013bChchCBD._interp_function | def _interp_function(self, y_ip1, y_i, t_ip1, t_i, imt_per):
"""
Generic interpolation function used in equation 19 of 2013 report.
"""
return y_i + (y_ip1 - y_i) / (t_ip1 - t_i) * (imt_per - t_i) | python | def _interp_function(self, y_ip1, y_i, t_ip1, t_i, imt_per):
return y_i + (y_ip1 - y_i) / (t_ip1 - t_i) * (imt_per - t_i) | [
"def",
"_interp_function",
"(",
"self",
",",
"y_ip1",
",",
"y_i",
",",
"t_ip1",
",",
"t_i",
",",
"imt_per",
")",
":",
"return",
"y_i",
"+",
"(",
"y_ip1",
"-",
"y_i",
")",
"/",
"(",
"t_ip1",
"-",
"t_i",
")",
"*",
"(",
"imt_per",
"-",
"t_i",
")"
] | Generic interpolation function used in equation 19 of 2013 report. | [
"Generic",
"interpolation",
"function",
"used",
"in",
"equation",
"19",
"of",
"2013",
"report",
"."
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/hazardlib/gsim/bradley_2013b.py#L154-L158 |
gem/oq-engine | openquake/hazardlib/gsim/bradley_2013b.py | Bradley2013bChchCBD._get_SRF_tau | def _get_SRF_tau(self, imt_per):
"""
Table 6 and equation 19 of 2013 report.
"""
if imt_per < 1:
srf = 0.87
elif 1 <= imt_per < 5:
srf = self._interp_function(0.58, 0.87, 5, 1, imt_per)
elif 5 <= imt_per <= 10:
srf = 0.58
else:
... | python | def _get_SRF_tau(self, imt_per):
if imt_per < 1:
srf = 0.87
elif 1 <= imt_per < 5:
srf = self._interp_function(0.58, 0.87, 5, 1, imt_per)
elif 5 <= imt_per <= 10:
srf = 0.58
else:
srf = 1
return srf | [
"def",
"_get_SRF_tau",
"(",
"self",
",",
"imt_per",
")",
":",
"if",
"imt_per",
"<",
"1",
":",
"srf",
"=",
"0.87",
"elif",
"1",
"<=",
"imt_per",
"<",
"5",
":",
"srf",
"=",
"self",
".",
"_interp_function",
"(",
"0.58",
",",
"0.87",
",",
"5",
",",
"... | Table 6 and equation 19 of 2013 report. | [
"Table",
"6",
"and",
"equation",
"19",
"of",
"2013",
"report",
"."
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/hazardlib/gsim/bradley_2013b.py#L160-L173 |
gem/oq-engine | openquake/hazardlib/gsim/bradley_2013b.py | Bradley2013bChchCBD._get_SRF_phi | def _get_SRF_phi(self, imt_per):
"""
Table 7 and equation 19 of 2013 report. NB change in notation,
2013 report calls this term 'sigma' but it is referred to here
as phi.
"""
if imt_per < 0.6:
srf = 0.8
elif 0.6 <= imt_per < 1:
srf = self._... | python | def _get_SRF_phi(self, imt_per):
if imt_per < 0.6:
srf = 0.8
elif 0.6 <= imt_per < 1:
srf = self._interp_function(0.7, 0.8, 1, 0.6, imt_per)
elif 1 <= imt_per <= 10:
srf = self._interp_function(0.6, 0.7, 10, 1, imt_per)
else:
srf =... | [
"def",
"_get_SRF_phi",
"(",
"self",
",",
"imt_per",
")",
":",
"if",
"imt_per",
"<",
"0.6",
":",
"srf",
"=",
"0.8",
"elif",
"0.6",
"<=",
"imt_per",
"<",
"1",
":",
"srf",
"=",
"self",
".",
"_interp_function",
"(",
"0.7",
",",
"0.8",
",",
"1",
",",
... | Table 7 and equation 19 of 2013 report. NB change in notation,
2013 report calls this term 'sigma' but it is referred to here
as phi. | [
"Table",
"7",
"and",
"equation",
"19",
"of",
"2013",
"report",
".",
"NB",
"change",
"in",
"notation",
"2013",
"report",
"calls",
"this",
"term",
"sigma",
"but",
"it",
"is",
"referred",
"to",
"here",
"as",
"phi",
"."
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/hazardlib/gsim/bradley_2013b.py#L175-L190 |
gem/oq-engine | openquake/hazardlib/gsim/bradley_2013b.py | Bradley2013bChchCBD._get_SRF_sigma | def _get_SRF_sigma(self, imt_per):
"""
Table 8 and equation 19 of 2013 report. NB change in notation,
2013 report calls this term 'sigma_t' but it is referred to
here as sigma. Note that Table 8 is identical to Table 7 in
the 2013 report.
"""
if imt_per < 0.6:
... | python | def _get_SRF_sigma(self, imt_per):
if imt_per < 0.6:
srf = 0.8
elif 0.6 <= imt_per < 1:
srf = self._interp_function(0.7, 0.8, 1, 0.6, imt_per)
elif 1 <= imt_per <= 10:
srf = self._interp_function(0.6, 0.7, 10, 1, imt_per)
else:
srf... | [
"def",
"_get_SRF_sigma",
"(",
"self",
",",
"imt_per",
")",
":",
"if",
"imt_per",
"<",
"0.6",
":",
"srf",
"=",
"0.8",
"elif",
"0.6",
"<=",
"imt_per",
"<",
"1",
":",
"srf",
"=",
"self",
".",
"_interp_function",
"(",
"0.7",
",",
"0.8",
",",
"1",
",",
... | Table 8 and equation 19 of 2013 report. NB change in notation,
2013 report calls this term 'sigma_t' but it is referred to
here as sigma. Note that Table 8 is identical to Table 7 in
the 2013 report. | [
"Table",
"8",
"and",
"equation",
"19",
"of",
"2013",
"report",
".",
"NB",
"change",
"in",
"notation",
"2013",
"report",
"calls",
"this",
"term",
"sigma_t",
"but",
"it",
"is",
"referred",
"to",
"here",
"as",
"sigma",
".",
"Note",
"that",
"Table",
"8",
"... | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/hazardlib/gsim/bradley_2013b.py#L192-L208 |
gem/oq-engine | openquake/hazardlib/gsim/bradley_2013b.py | Bradley2013bChchCBD._get_dL2L | def _get_dL2L(self, imt_per):
"""
Table 3 and equation 19 of 2013 report.
"""
if imt_per < 0.18:
dL2L = -0.06
elif 0.18 <= imt_per < 0.35:
dL2L = self._interp_function(0.12, -0.06, 0.35, 0.18, imt_per)
elif 0.35 <= imt_per <= 10:
dL2L =... | python | def _get_dL2L(self, imt_per):
if imt_per < 0.18:
dL2L = -0.06
elif 0.18 <= imt_per < 0.35:
dL2L = self._interp_function(0.12, -0.06, 0.35, 0.18, imt_per)
elif 0.35 <= imt_per <= 10:
dL2L = self._interp_function(0.65, 0.12, 10, 0.35, imt_per)
e... | [
"def",
"_get_dL2L",
"(",
"self",
",",
"imt_per",
")",
":",
"if",
"imt_per",
"<",
"0.18",
":",
"dL2L",
"=",
"-",
"0.06",
"elif",
"0.18",
"<=",
"imt_per",
"<",
"0.35",
":",
"dL2L",
"=",
"self",
".",
"_interp_function",
"(",
"0.12",
",",
"-",
"0.06",
... | Table 3 and equation 19 of 2013 report. | [
"Table",
"3",
"and",
"equation",
"19",
"of",
"2013",
"report",
"."
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/hazardlib/gsim/bradley_2013b.py#L210-L223 |
gem/oq-engine | openquake/hazardlib/gsim/bradley_2013b.py | Bradley2013bChchCBD._get_dS2S | def _get_dS2S(self, imt_per):
"""
Table 4 of 2013 report
"""
if imt_per == 0:
dS2S = 0.05
elif 0 < imt_per < 0.15:
dS2S = self._interp_function(-0.15, 0.05, 0.15, 0, imt_per)
elif 0.15 <= imt_per < 0.45:
dS2S = self._interp_function(0.4... | python | def _get_dS2S(self, imt_per):
if imt_per == 0:
dS2S = 0.05
elif 0 < imt_per < 0.15:
dS2S = self._interp_function(-0.15, 0.05, 0.15, 0, imt_per)
elif 0.15 <= imt_per < 0.45:
dS2S = self._interp_function(0.4, -0.15, 0.45, 0.15, imt_per)
elif 0.4... | [
"def",
"_get_dS2S",
"(",
"self",
",",
"imt_per",
")",
":",
"if",
"imt_per",
"==",
"0",
":",
"dS2S",
"=",
"0.05",
"elif",
"0",
"<",
"imt_per",
"<",
"0.15",
":",
"dS2S",
"=",
"self",
".",
"_interp_function",
"(",
"-",
"0.15",
",",
"0.05",
",",
"0.15"... | Table 4 of 2013 report | [
"Table",
"4",
"of",
"2013",
"report"
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/hazardlib/gsim/bradley_2013b.py#L225-L244 |
gem/oq-engine | openquake/hazardlib/calc/filters.py | context | def context(src):
"""
Used to add the source_id to the error message. To be used as
with context(src):
operation_with(src)
Typically the operation is filtering a source, that can fail for
tricky geometries.
"""
try:
yield
except Exception:
etype, err, tb = sys.e... | python | def context(src):
try:
yield
except Exception:
etype, err, tb = sys.exc_info()
msg = 'An error occurred with source id=%s. Error: %s'
msg %= (src.source_id, err)
raise_(etype, msg, tb) | [
"def",
"context",
"(",
"src",
")",
":",
"try",
":",
"yield",
"except",
"Exception",
":",
"etype",
",",
"err",
",",
"tb",
"=",
"sys",
".",
"exc_info",
"(",
")",
"msg",
"=",
"'An error occurred with source id=%s. Error: %s'",
"msg",
"%=",
"(",
"src",
".",
... | Used to add the source_id to the error message. To be used as
with context(src):
operation_with(src)
Typically the operation is filtering a source, that can fail for
tricky geometries. | [
"Used",
"to",
"add",
"the",
"source_id",
"to",
"the",
"error",
"message",
".",
"To",
"be",
"used",
"as"
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/hazardlib/calc/filters.py#L39-L55 |
gem/oq-engine | openquake/hazardlib/calc/filters.py | split_sources | def split_sources(srcs):
"""
:param srcs: sources
:returns: a pair (split sources, split time) or just the split_sources
"""
from openquake.hazardlib.source import splittable
sources = []
split_time = {} # src.id -> time
for src in srcs:
t0 = time.time()
mag_a, mag_b = s... | python | def split_sources(srcs):
from openquake.hazardlib.source import splittable
sources = []
split_time = {}
for src in srcs:
t0 = time.time()
mag_a, mag_b = src.get_min_max_mag()
min_mag = src.min_mag
if mag_b < min_mag:
continue
has_serial = hasa... | [
"def",
"split_sources",
"(",
"srcs",
")",
":",
"from",
"openquake",
".",
"hazardlib",
".",
"source",
"import",
"splittable",
"sources",
"=",
"[",
"]",
"split_time",
"=",
"{",
"}",
"# src.id -> time",
"for",
"src",
"in",
"srcs",
":",
"t0",
"=",
"time",
".... | :param srcs: sources
:returns: a pair (split sources, split time) or just the split_sources | [
":",
"param",
"srcs",
":",
"sources",
":",
"returns",
":",
"a",
"pair",
"(",
"split",
"sources",
"split",
"time",
")",
"or",
"just",
"the",
"split_sources"
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/hazardlib/calc/filters.py#L186-L241 |
gem/oq-engine | openquake/hazardlib/calc/filters.py | IntegrationDistance.get_bounding_box | def get_bounding_box(self, lon, lat, trt=None, mag=None):
"""
Build a bounding box around the given lon, lat by computing the
maximum_distance at the given tectonic region type and magnitude.
:param lon: longitude
:param lat: latitude
:param trt: tectonic region type, po... | python | def get_bounding_box(self, lon, lat, trt=None, mag=None):
if trt is None:
maxdist = max(self(trt, mag) for trt in self.dic)
else:
maxdist = self(trt, mag)
a1 = min(maxdist * KM_TO_DEGREES, 90)
a2 = min(angular_distance(maxdist, lat), 180)
retu... | [
"def",
"get_bounding_box",
"(",
"self",
",",
"lon",
",",
"lat",
",",
"trt",
"=",
"None",
",",
"mag",
"=",
"None",
")",
":",
"if",
"trt",
"is",
"None",
":",
"# take the greatest integration distance",
"maxdist",
"=",
"max",
"(",
"self",
"(",
"trt",
",",
... | Build a bounding box around the given lon, lat by computing the
maximum_distance at the given tectonic region type and magnitude.
:param lon: longitude
:param lat: latitude
:param trt: tectonic region type, possibly None
:param mag: magnitude, possibly None
:returns: min... | [
"Build",
"a",
"bounding",
"box",
"around",
"the",
"given",
"lon",
"lat",
"by",
"computing",
"the",
"maximum_distance",
"at",
"the",
"given",
"tectonic",
"region",
"type",
"and",
"magnitude",
"."
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/hazardlib/calc/filters.py#L138-L155 |
gem/oq-engine | openquake/hazardlib/calc/filters.py | IntegrationDistance.get_affected_box | def get_affected_box(self, src):
"""
Get the enlarged bounding box of a source.
:param src: a source object
:returns: a bounding box (min_lon, min_lat, max_lon, max_lat)
"""
mag = src.get_min_max_mag()[1]
maxdist = self(src.tectonic_region_type, mag)
bbox... | python | def get_affected_box(self, src):
mag = src.get_min_max_mag()[1]
maxdist = self(src.tectonic_region_type, mag)
bbox = get_bounding_box(src, maxdist)
return (fix_lon(bbox[0]), bbox[1], fix_lon(bbox[2]), bbox[3]) | [
"def",
"get_affected_box",
"(",
"self",
",",
"src",
")",
":",
"mag",
"=",
"src",
".",
"get_min_max_mag",
"(",
")",
"[",
"1",
"]",
"maxdist",
"=",
"self",
"(",
"src",
".",
"tectonic_region_type",
",",
"mag",
")",
"bbox",
"=",
"get_bounding_box",
"(",
"s... | Get the enlarged bounding box of a source.
:param src: a source object
:returns: a bounding box (min_lon, min_lat, max_lon, max_lat) | [
"Get",
"the",
"enlarged",
"bounding",
"box",
"of",
"a",
"source",
"."
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/hazardlib/calc/filters.py#L157-L167 |
gem/oq-engine | openquake/hazardlib/calc/filters.py | SourceFilter.sitecol | def sitecol(self):
"""
Read the site collection from .filename and cache it
"""
if 'sitecol' in vars(self):
return self.__dict__['sitecol']
if self.filename is None or not os.path.exists(self.filename):
# case of nofilter/None sitecol
return
... | python | def sitecol(self):
if 'sitecol' in vars(self):
return self.__dict__['sitecol']
if self.filename is None or not os.path.exists(self.filename):
return
with hdf5.File(self.filename, 'r') as h5:
self.__dict__['sitecol'] = sc = h5.get('sitecol... | [
"def",
"sitecol",
"(",
"self",
")",
":",
"if",
"'sitecol'",
"in",
"vars",
"(",
"self",
")",
":",
"return",
"self",
".",
"__dict__",
"[",
"'sitecol'",
"]",
"if",
"self",
".",
"filename",
"is",
"None",
"or",
"not",
"os",
".",
"path",
".",
"exists",
"... | Read the site collection from .filename and cache it | [
"Read",
"the",
"site",
"collection",
"from",
".",
"filename",
"and",
"cache",
"it"
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/hazardlib/calc/filters.py#L276-L287 |
gem/oq-engine | openquake/hazardlib/calc/filters.py | SourceFilter.get_rectangle | def get_rectangle(self, src):
"""
:param src: a source object
:returns: ((min_lon, min_lat), width, height), useful for plotting
"""
min_lon, min_lat, max_lon, max_lat = (
self.integration_distance.get_affected_box(src))
return (min_lon, min_lat), (max_lon - m... | python | def get_rectangle(self, src):
min_lon, min_lat, max_lon, max_lat = (
self.integration_distance.get_affected_box(src))
return (min_lon, min_lat), (max_lon - min_lon) % 360, max_lat - min_lat | [
"def",
"get_rectangle",
"(",
"self",
",",
"src",
")",
":",
"min_lon",
",",
"min_lat",
",",
"max_lon",
",",
"max_lat",
"=",
"(",
"self",
".",
"integration_distance",
".",
"get_affected_box",
"(",
"src",
")",
")",
"return",
"(",
"min_lon",
",",
"min_lat",
... | :param src: a source object
:returns: ((min_lon, min_lat), width, height), useful for plotting | [
":",
"param",
"src",
":",
"a",
"source",
"object",
":",
"returns",
":",
"((",
"min_lon",
"min_lat",
")",
"width",
"height",
")",
"useful",
"for",
"plotting"
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/hazardlib/calc/filters.py#L289-L296 |
gem/oq-engine | openquake/hazardlib/calc/filters.py | SourceFilter.get_bounding_boxes | def get_bounding_boxes(self, trt=None, mag=None):
"""
:param trt: a tectonic region type (used for the integration distance)
:param mag: a magnitude (used for the integration distance)
:returns: a list of bounding boxes, one per site
"""
bbs = []
for site in self.... | python | def get_bounding_boxes(self, trt=None, mag=None):
bbs = []
for site in self.sitecol:
bb = self.integration_distance.get_bounding_box(
site.location.longitude, site.location.latitude, trt, mag)
bbs.append(bb)
return bbs | [
"def",
"get_bounding_boxes",
"(",
"self",
",",
"trt",
"=",
"None",
",",
"mag",
"=",
"None",
")",
":",
"bbs",
"=",
"[",
"]",
"for",
"site",
"in",
"self",
".",
"sitecol",
":",
"bb",
"=",
"self",
".",
"integration_distance",
".",
"get_bounding_box",
"(",
... | :param trt: a tectonic region type (used for the integration distance)
:param mag: a magnitude (used for the integration distance)
:returns: a list of bounding boxes, one per site | [
":",
"param",
"trt",
":",
"a",
"tectonic",
"region",
"type",
"(",
"used",
"for",
"the",
"integration",
"distance",
")",
":",
"param",
"mag",
":",
"a",
"magnitude",
"(",
"used",
"for",
"the",
"integration",
"distance",
")",
":",
"returns",
":",
"a",
"li... | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/hazardlib/calc/filters.py#L319-L330 |
gem/oq-engine | openquake/hazardlib/calc/filters.py | SourceFilter.close_sids | def close_sids(self, rec, trt, mag):
"""
:param rec:
a record with fields minlon, minlat, maxlon, maxlat
:param trt:
tectonic region type string
:param mag:
magnitude
:returns:
the site indices within the bounding box enlarged by the in... | python | def close_sids(self, rec, trt, mag):
if self.sitecol is None:
return []
elif not self.integration_distance:
return self.sitecol.sids
if hasattr(rec, 'dtype'):
bbox = rec['minlon'], rec['minlat'], rec['maxlon'], rec['maxlat']
else:
... | [
"def",
"close_sids",
"(",
"self",
",",
"rec",
",",
"trt",
",",
"mag",
")",
":",
"if",
"self",
".",
"sitecol",
"is",
"None",
":",
"return",
"[",
"]",
"elif",
"not",
"self",
".",
"integration_distance",
":",
"# do not filter",
"return",
"self",
".",
"sit... | :param rec:
a record with fields minlon, minlat, maxlon, maxlat
:param trt:
tectonic region type string
:param mag:
magnitude
:returns:
the site indices within the bounding box enlarged by the integration
distance for the given TRT and magni... | [
":",
"param",
"rec",
":",
"a",
"record",
"with",
"fields",
"minlon",
"minlat",
"maxlon",
"maxlat",
":",
"param",
"trt",
":",
"tectonic",
"region",
"type",
"string",
":",
"param",
"mag",
":",
"magnitude",
":",
"returns",
":",
"the",
"site",
"indices",
"wi... | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/hazardlib/calc/filters.py#L332-L358 |
gem/oq-engine | openquake/hazardlib/calc/filters.py | SourceFilter.filter | def filter(self, sources):
"""
:param sources: a sequence of sources
:yields: sources with .indices
"""
for src in sources:
if hasattr(src, 'indices'): # already filtered
yield src
continue
box = self.integration_distance.... | python | def filter(self, sources):
for src in sources:
if hasattr(src, 'indices'):
yield src
continue
box = self.integration_distance.get_affected_box(src)
indices = self.sitecol.within_bbox(box)
if len(indices):
... | [
"def",
"filter",
"(",
"self",
",",
"sources",
")",
":",
"for",
"src",
"in",
"sources",
":",
"if",
"hasattr",
"(",
"src",
",",
"'indices'",
")",
":",
"# already filtered",
"yield",
"src",
"continue",
"box",
"=",
"self",
".",
"integration_distance",
".",
"... | :param sources: a sequence of sources
:yields: sources with .indices | [
":",
"param",
"sources",
":",
"a",
"sequence",
"of",
"sources",
":",
"yields",
":",
"sources",
"with",
".",
"indices"
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/hazardlib/calc/filters.py#L360-L373 |
gem/oq-engine | openquake/hazardlib/calc/filters.py | RtreeFilter.filter | def filter(self, sources):
"""
:param sources: a sequence of sources
:yields: rtree-filtered sources
"""
if self.sitecol is None: # do not filter
yield from sources
return
for src in sources:
box = self.integration_distance.get_affecte... | python | def filter(self, sources):
if self.sitecol is None:
yield from sources
return
for src in sources:
box = self.integration_distance.get_affected_box(src)
indices = within(box, self.index)
if len(indices):
src.indices = ... | [
"def",
"filter",
"(",
"self",
",",
"sources",
")",
":",
"if",
"self",
".",
"sitecol",
"is",
"None",
":",
"# do not filter",
"yield",
"from",
"sources",
"return",
"for",
"src",
"in",
"sources",
":",
"box",
"=",
"self",
".",
"integration_distance",
".",
"g... | :param sources: a sequence of sources
:yields: rtree-filtered sources | [
":",
"param",
"sources",
":",
"a",
"sequence",
"of",
"sources",
":",
"yields",
":",
"rtree",
"-",
"filtered",
"sources"
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/hazardlib/calc/filters.py#L419-L432 |
gem/oq-engine | openquake/commands/to_shapefile.py | to_shapefile | def to_shapefile(output, input_nrml_file, validate):
"""
Convert a NRML source model file to ESRI Shapefile(s).
For each type of source geometry defined in the NRML file (point, area,
simple fault, complex fault, planar) a separate shapefile is created. Each
shapefile is differentiated by a specifi... | python | def to_shapefile(output, input_nrml_file, validate):
input_parser = shapefileparser.SourceModelParser()
source_model = input_parser.read(input_nrml_file, validate)
if not output:
output = os.path.splitext(input_nrml_file)[0]
print('Extracting %s_ files' % output)
shapefileparser.Shapefi... | [
"def",
"to_shapefile",
"(",
"output",
",",
"input_nrml_file",
",",
"validate",
")",
":",
"input_parser",
"=",
"shapefileparser",
".",
"SourceModelParser",
"(",
")",
"source_model",
"=",
"input_parser",
".",
"read",
"(",
"input_nrml_file",
",",
"validate",
")",
"... | Convert a NRML source model file to ESRI Shapefile(s).
For each type of source geometry defined in the NRML file (point, area,
simple fault, complex fault, planar) a separate shapefile is created. Each
shapefile is differentiated by a specific ending('_point', '_area',
'_simple', '_complex', '_planar')... | [
"Convert",
"a",
"NRML",
"source",
"model",
"file",
"to",
"ESRI",
"Shapefile",
"(",
"s",
")",
"."
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/commands/to_shapefile.py#L24-L40 |
gem/oq-engine | openquake/hazardlib/geo/surface/simple_fault.py | simple_fault_node | def simple_fault_node(fault_trace, dip, upper_depth, lower_depth):
"""
:param fault_trace: an object with an attribute .points
:param dip: dip parameter
:param upper_depth: upper seismogenic depth
:param lower_depth: lower seismogenic depth
:returns: a Node of kind simpleFaultGeometry
"""
... | python | def simple_fault_node(fault_trace, dip, upper_depth, lower_depth):
node = Node('simpleFaultGeometry')
line = []
for p in fault_trace.points:
line.append(p.longitude)
line.append(p.latitude)
node.append(Node('gml:LineString', nodes=[Node('gml:posList', {}, line)]))
node.append(No... | [
"def",
"simple_fault_node",
"(",
"fault_trace",
",",
"dip",
",",
"upper_depth",
",",
"lower_depth",
")",
":",
"node",
"=",
"Node",
"(",
"'simpleFaultGeometry'",
")",
"line",
"=",
"[",
"]",
"for",
"p",
"in",
"fault_trace",
".",
"points",
":",
"line",
".",
... | :param fault_trace: an object with an attribute .points
:param dip: dip parameter
:param upper_depth: upper seismogenic depth
:param lower_depth: lower seismogenic depth
:returns: a Node of kind simpleFaultGeometry | [
":",
"param",
"fault_trace",
":",
"an",
"object",
"with",
"an",
"attribute",
".",
"points",
":",
"param",
"dip",
":",
"dip",
"parameter",
":",
"param",
"upper_depth",
":",
"upper",
"seismogenic",
"depth",
":",
"param",
"lower_depth",
":",
"lower",
"seismogen... | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/hazardlib/geo/surface/simple_fault.py#L35-L52 |
gem/oq-engine | openquake/hazardlib/geo/surface/simple_fault.py | SimpleFaultSurface.check_fault_data | def check_fault_data(cls, fault_trace, upper_seismogenic_depth,
lower_seismogenic_depth, dip, mesh_spacing):
"""
Verify the fault data and raise ``ValueError`` if anything is wrong.
This method doesn't have to be called by hands before creating the
surface objec... | python | def check_fault_data(cls, fault_trace, upper_seismogenic_depth,
lower_seismogenic_depth, dip, mesh_spacing):
if not len(fault_trace) >= 2:
raise ValueError("the fault trace must have at least two points")
if not fault_trace.horizontal():
raise Va... | [
"def",
"check_fault_data",
"(",
"cls",
",",
"fault_trace",
",",
"upper_seismogenic_depth",
",",
"lower_seismogenic_depth",
",",
"dip",
",",
"mesh_spacing",
")",
":",
"if",
"not",
"len",
"(",
"fault_trace",
")",
">=",
"2",
":",
"raise",
"ValueError",
"(",
"\"th... | Verify the fault data and raise ``ValueError`` if anything is wrong.
This method doesn't have to be called by hands before creating the
surface object, because it is called from :meth:`from_fault_data`. | [
"Verify",
"the",
"fault",
"data",
"and",
"raise",
"ValueError",
"if",
"anything",
"is",
"wrong",
"."
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/hazardlib/geo/surface/simple_fault.py#L107-L132 |
gem/oq-engine | openquake/hazardlib/geo/surface/simple_fault.py | SimpleFaultSurface.from_fault_data | def from_fault_data(cls, fault_trace, upper_seismogenic_depth,
lower_seismogenic_depth, dip, mesh_spacing):
"""
Create and return a fault surface using fault source data.
:param openquake.hazardlib.geo.line.Line fault_trace:
Geographical line representing the... | python | def from_fault_data(cls, fault_trace, upper_seismogenic_depth,
lower_seismogenic_depth, dip, mesh_spacing):
cls.check_fault_data(fault_trace, upper_seismogenic_depth,
lower_seismogenic_depth, dip, mesh_spacing)
vdi... | [
"def",
"from_fault_data",
"(",
"cls",
",",
"fault_trace",
",",
"upper_seismogenic_depth",
",",
"lower_seismogenic_depth",
",",
"dip",
",",
"mesh_spacing",
")",
":",
"cls",
".",
"check_fault_data",
"(",
"fault_trace",
",",
"upper_seismogenic_depth",
",",
"lower_seismog... | Create and return a fault surface using fault source data.
:param openquake.hazardlib.geo.line.Line fault_trace:
Geographical line representing the intersection between the fault
surface and the earth surface. The line must be horizontal (i.e.
all depth values must be equal)... | [
"Create",
"and",
"return",
"a",
"fault",
"surface",
"using",
"fault",
"source",
"data",
"."
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/hazardlib/geo/surface/simple_fault.py#L135-L196 |
gem/oq-engine | openquake/hazardlib/geo/surface/simple_fault.py | SimpleFaultSurface.get_fault_patch_vertices | def get_fault_patch_vertices(cls, rupture_top_edge,
upper_seismogenic_depth,
lower_seismogenic_depth, dip, index_patch=1):
"""
Get surface main vertices.
Parameters are the same as for :meth:`from_fault_data`, excluding
fa... | python | def get_fault_patch_vertices(cls, rupture_top_edge,
upper_seismogenic_depth,
lower_seismogenic_depth, dip, index_patch=1):
dip_tan = math.tan(math.radians(dip))
hdist_bottom = (
lower_seismogenic_depth - uppe... | [
"def",
"get_fault_patch_vertices",
"(",
"cls",
",",
"rupture_top_edge",
",",
"upper_seismogenic_depth",
",",
"lower_seismogenic_depth",
",",
"dip",
",",
"index_patch",
"=",
"1",
")",
":",
"# Similar to :meth:`from_fault_data`, we just don't resample edges",
"dip_tan",
"=",
... | Get surface main vertices.
Parameters are the same as for :meth:`from_fault_data`, excluding
fault_trace, and mesh spacing.
:param rupture_top_edge:
A instances of :class:`openquake.hazardlib.geo.line.Line`
representing the rupture surface's top edge.
:param inde... | [
"Get",
"surface",
"main",
"vertices",
".",
"Parameters",
"are",
"the",
"same",
"as",
"for",
":",
"meth",
":",
"from_fault_data",
"excluding",
"fault_trace",
"and",
"mesh",
"spacing",
"."
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/hazardlib/geo/surface/simple_fault.py#L199-L253 |
gem/oq-engine | openquake/hazardlib/geo/surface/simple_fault.py | SimpleFaultSurface.hypocentre_patch_index | def hypocentre_patch_index(cls, hypocentre, rupture_top_edge,
upper_seismogenic_depth,
lower_seismogenic_depth, dip):
"""
This methods finds the index of the fault patch including
the hypocentre.
:param hypocentre:
... | python | def hypocentre_patch_index(cls, hypocentre, rupture_top_edge,
upper_seismogenic_depth,
lower_seismogenic_depth, dip):
totaln_patch = len(rupture_top_edge)
indexlist = []
dist_list = []
for i, index in enumerate(range(... | [
"def",
"hypocentre_patch_index",
"(",
"cls",
",",
"hypocentre",
",",
"rupture_top_edge",
",",
"upper_seismogenic_depth",
",",
"lower_seismogenic_depth",
",",
"dip",
")",
":",
"totaln_patch",
"=",
"len",
"(",
"rupture_top_edge",
")",
"indexlist",
"=",
"[",
"]",
"di... | This methods finds the index of the fault patch including
the hypocentre.
:param hypocentre:
:class:`~openquake.hazardlib.geo.point.Point` object
representing the location of hypocentre.
:param rupture_top_edge:
A instances of :class:`openquake.hazardlib.geo.... | [
"This",
"methods",
"finds",
"the",
"index",
"of",
"the",
"fault",
"patch",
"including",
"the",
"hypocentre",
"."
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/hazardlib/geo/surface/simple_fault.py#L256-L298 |
gem/oq-engine | openquake/hazardlib/geo/surface/simple_fault.py | SimpleFaultSurface.get_surface_vertexes | def get_surface_vertexes(cls, fault_trace,
upper_seismogenic_depth,
lower_seismogenic_depth, dip):
"""
Get surface main vertexes.
Parameters are the same as for :meth:`from_fault_data`, excluding
mesh spacing.
:returns:
... | python | def get_surface_vertexes(cls, fault_trace,
upper_seismogenic_depth,
lower_seismogenic_depth, dip):
dip_tan = math.tan(math.radians(dip))
hdist_top = upper_seismogenic_depth / dip_tan
hdist_bottom = lower_seismogenic_dept... | [
"def",
"get_surface_vertexes",
"(",
"cls",
",",
"fault_trace",
",",
"upper_seismogenic_depth",
",",
"lower_seismogenic_depth",
",",
"dip",
")",
":",
"# Similar to :meth:`from_fault_data`, we just don't resample edges",
"dip_tan",
"=",
"math",
".",
"tan",
"(",
"math",
".",... | Get surface main vertexes.
Parameters are the same as for :meth:`from_fault_data`, excluding
mesh spacing.
:returns:
Instance of :class:`~openquake.hazardlib.geo.polygon.Polygon`
describing the surface projection of the simple fault with
specified parameters... | [
"Get",
"surface",
"main",
"vertexes",
"."
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/hazardlib/geo/surface/simple_fault.py#L301-L336 |
gem/oq-engine | openquake/hazardlib/geo/surface/simple_fault.py | SimpleFaultSurface.surface_projection_from_fault_data | def surface_projection_from_fault_data(cls, fault_trace,
upper_seismogenic_depth,
lower_seismogenic_depth, dip):
"""
Get a surface projection of the simple fault surface.
Parameters are the same as for :meth:`... | python | def surface_projection_from_fault_data(cls, fault_trace,
upper_seismogenic_depth,
lower_seismogenic_depth, dip):
lons, lats = cls.get_surface_vertexes(fault_trace,
upper_s... | [
"def",
"surface_projection_from_fault_data",
"(",
"cls",
",",
"fault_trace",
",",
"upper_seismogenic_depth",
",",
"lower_seismogenic_depth",
",",
"dip",
")",
":",
"lons",
",",
"lats",
"=",
"cls",
".",
"get_surface_vertexes",
"(",
"fault_trace",
",",
"upper_seismogenic... | Get a surface projection of the simple fault surface.
Parameters are the same as for :meth:`from_fault_data`, excluding
mesh spacing.
:returns:
Instance of :class:`~openquake.hazardlib.geo.polygon.Polygon`
describing the surface projection of the simple fault with
... | [
"Get",
"a",
"surface",
"projection",
"of",
"the",
"simple",
"fault",
"surface",
"."
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/hazardlib/geo/surface/simple_fault.py#L339-L356 |
gem/oq-engine | openquake/hazardlib/gsim/zhao_2006.py | ZhaoEtAl2006Asc.get_mean_and_stddevs | def get_mean_and_stddevs(self, sites, rup, dists, imt, stddev_types):
"""
See :meth:`superclass method
<.base.GroundShakingIntensityModel.get_mean_and_stddevs>`
for spec of input and result values.
"""
# extracting dictionary of coefficients specific to required
#... | python | def get_mean_and_stddevs(self, sites, rup, dists, imt, stddev_types):
C = self.COEFFS_ASC[imt]
mean = self._compute_magnitude_term(C, rup.mag) +\
self._compute_distance_term(C, rup.mag, dists.rrup) +\
self._compute_f... | [
"def",
"get_mean_and_stddevs",
"(",
"self",
",",
"sites",
",",
"rup",
",",
"dists",
",",
"imt",
",",
"stddev_types",
")",
":",
"# extracting dictionary of coefficients specific to required",
"# intensity measure type.",
"C",
"=",
"self",
".",
"COEFFS_ASC",
"[",
"imt",... | See :meth:`superclass method
<.base.GroundShakingIntensityModel.get_mean_and_stddevs>`
for spec of input and result values. | [
"See",
":",
"meth",
":",
"superclass",
"method",
"<",
".",
"base",
".",
"GroundShakingIntensityModel",
".",
"get_mean_and_stddevs",
">",
"for",
"spec",
"of",
"input",
"and",
"result",
"values",
"."
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/hazardlib/gsim/zhao_2006.py#L81-L109 |
gem/oq-engine | openquake/hazardlib/gsim/zhao_2006.py | ZhaoEtAl2006Asc._compute_distance_term | def _compute_distance_term(self, C, mag, rrup):
"""
Compute second and third terms in equation 1, p. 901.
"""
term1 = C['b'] * rrup
term2 = - np.log(rrup + C['c'] * np.exp(C['d'] * mag))
return term1 + term2 | python | def _compute_distance_term(self, C, mag, rrup):
term1 = C['b'] * rrup
term2 = - np.log(rrup + C['c'] * np.exp(C['d'] * mag))
return term1 + term2 | [
"def",
"_compute_distance_term",
"(",
"self",
",",
"C",
",",
"mag",
",",
"rrup",
")",
":",
"term1",
"=",
"C",
"[",
"'b'",
"]",
"*",
"rrup",
"term2",
"=",
"-",
"np",
".",
"log",
"(",
"rrup",
"+",
"C",
"[",
"'c'",
"]",
"*",
"np",
".",
"exp",
"(... | Compute second and third terms in equation 1, p. 901. | [
"Compute",
"second",
"and",
"third",
"terms",
"in",
"equation",
"1",
"p",
".",
"901",
"."
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/hazardlib/gsim/zhao_2006.py#L133-L140 |
gem/oq-engine | openquake/hazardlib/gsim/zhao_2006.py | ZhaoEtAl2006Asc._compute_focal_depth_term | def _compute_focal_depth_term(self, C, hypo_depth):
"""
Compute fourth term in equation 1, p. 901.
"""
# p. 901. "(i.e, depth is capped at 125 km)".
focal_depth = hypo_depth
if focal_depth > 125.0:
focal_depth = 125.0
# p. 902. "We used the value of 1... | python | def _compute_focal_depth_term(self, C, hypo_depth):
focal_depth = hypo_depth
if focal_depth > 125.0:
focal_depth = 125.0
hc = 15.0
return float(focal_depth >= hc) * C['e'] * (focal_depth - hc) | [
"def",
"_compute_focal_depth_term",
"(",
"self",
",",
"C",
",",
"hypo_depth",
")",
":",
"# p. 901. \"(i.e, depth is capped at 125 km)\".",
"focal_depth",
"=",
"hypo_depth",
"if",
"focal_depth",
">",
"125.0",
":",
"focal_depth",
"=",
"125.0",
"# p. 902. \"We used the value... | Compute fourth term in equation 1, p. 901. | [
"Compute",
"fourth",
"term",
"in",
"equation",
"1",
"p",
".",
"901",
"."
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/hazardlib/gsim/zhao_2006.py#L142-L157 |
gem/oq-engine | openquake/hazardlib/gsim/zhao_2006.py | ZhaoEtAl2006Asc._compute_site_class_term | def _compute_site_class_term(self, C, vs30):
"""
Compute nine-th term in equation 1, p. 901.
"""
# map vs30 value to site class, see table 2, p. 901.
site_term = np.zeros(len(vs30))
# hard rock
site_term[vs30 > 1100.0] = C['CH']
# rock
site_term[... | python | def _compute_site_class_term(self, C, vs30):
site_term = np.zeros(len(vs30))
site_term[vs30 > 1100.0] = C['CH']
site_term[(vs30 > 600) & (vs30 <= 1100)] = C['C1']
site_term[(vs30 > 300) & (vs30 <= 600)] = C['C2']
site_term... | [
"def",
"_compute_site_class_term",
"(",
"self",
",",
"C",
",",
"vs30",
")",
":",
"# map vs30 value to site class, see table 2, p. 901.",
"site_term",
"=",
"np",
".",
"zeros",
"(",
"len",
"(",
"vs30",
")",
")",
"# hard rock",
"site_term",
"[",
"vs30",
">",
"1100.... | Compute nine-th term in equation 1, p. 901. | [
"Compute",
"nine",
"-",
"th",
"term",
"in",
"equation",
"1",
"p",
".",
"901",
"."
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/hazardlib/gsim/zhao_2006.py#L168-L190 |
gem/oq-engine | openquake/hazardlib/gsim/zhao_2006.py | ZhaoEtAl2006Asc._compute_magnitude_squared_term | def _compute_magnitude_squared_term(self, P, M, Q, W, mag):
"""
Compute magnitude squared term, equation 5, p. 909.
"""
return P * (mag - M) + Q * (mag - M) ** 2 + W | python | def _compute_magnitude_squared_term(self, P, M, Q, W, mag):
return P * (mag - M) + Q * (mag - M) ** 2 + W | [
"def",
"_compute_magnitude_squared_term",
"(",
"self",
",",
"P",
",",
"M",
",",
"Q",
",",
"W",
",",
"mag",
")",
":",
"return",
"P",
"*",
"(",
"mag",
"-",
"M",
")",
"+",
"Q",
"*",
"(",
"mag",
"-",
"M",
")",
"**",
"2",
"+",
"W"
] | Compute magnitude squared term, equation 5, p. 909. | [
"Compute",
"magnitude",
"squared",
"term",
"equation",
"5",
"p",
".",
"909",
"."
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/hazardlib/gsim/zhao_2006.py#L192-L196 |
gem/oq-engine | openquake/hazardlib/gsim/zhao_2006.py | ZhaoEtAl2006SSlab._compute_slab_correction_term | def _compute_slab_correction_term(self, C, rrup):
"""
Compute path modification term for slab events, that is
the 8-th term in equation 1, p. 901.
"""
slab_term = C['SSL'] * np.log(rrup)
return slab_term | python | def _compute_slab_correction_term(self, C, rrup):
slab_term = C['SSL'] * np.log(rrup)
return slab_term | [
"def",
"_compute_slab_correction_term",
"(",
"self",
",",
"C",
",",
"rrup",
")",
":",
"slab_term",
"=",
"C",
"[",
"'SSL'",
"]",
"*",
"np",
".",
"log",
"(",
"rrup",
")",
"return",
"slab_term"
] | Compute path modification term for slab events, that is
the 8-th term in equation 1, p. 901. | [
"Compute",
"path",
"modification",
"term",
"for",
"slab",
"events",
"that",
"is",
"the",
"8",
"-",
"th",
"term",
"in",
"equation",
"1",
"p",
".",
"901",
"."
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/hazardlib/gsim/zhao_2006.py#L369-L376 |
gem/oq-engine | openquake/hazardlib/gsim/zhao_2006.py | ZhaoEtAl2006AscSGS.get_mean_and_stddevs | def get_mean_and_stddevs(self, sites, rup, dists, imt, stddev_types):
"""
Using a minimum distance of 5km for the calculation.
"""
dists_mod = copy.deepcopy(dists)
dists_mod.rrup[dists.rrup <= 5.] = 5.
return super().get_mean_and_stddevs(
sites, rup, dists_m... | python | def get_mean_and_stddevs(self, sites, rup, dists, imt, stddev_types):
dists_mod = copy.deepcopy(dists)
dists_mod.rrup[dists.rrup <= 5.] = 5.
return super().get_mean_and_stddevs(
sites, rup, dists_mod, imt, stddev_types) | [
"def",
"get_mean_and_stddevs",
"(",
"self",
",",
"sites",
",",
"rup",
",",
"dists",
",",
"imt",
",",
"stddev_types",
")",
":",
"dists_mod",
"=",
"copy",
".",
"deepcopy",
"(",
"dists",
")",
"dists_mod",
".",
"rrup",
"[",
"dists",
".",
"rrup",
"<=",
"5."... | Using a minimum distance of 5km for the calculation. | [
"Using",
"a",
"minimum",
"distance",
"of",
"5km",
"for",
"the",
"calculation",
"."
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/hazardlib/gsim/zhao_2006.py#L654-L663 |
gem/oq-engine | openquake/engine/utils/__init__.py | confirm | def confirm(prompt):
"""
Ask for confirmation, given a ``prompt`` and return a boolean value.
"""
while True:
try:
answer = input(prompt)
except KeyboardInterrupt:
# the user presses ctrl+c, just say 'no'
return False
answer = answer.strip().lo... | python | def confirm(prompt):
while True:
try:
answer = input(prompt)
except KeyboardInterrupt:
return False
answer = answer.strip().lower()
if answer not in ('y', 'n'):
print('Please enter y or n')
continue
return answ... | [
"def",
"confirm",
"(",
"prompt",
")",
":",
"while",
"True",
":",
"try",
":",
"answer",
"=",
"input",
"(",
"prompt",
")",
"except",
"KeyboardInterrupt",
":",
"# the user presses ctrl+c, just say 'no'",
"return",
"False",
"answer",
"=",
"answer",
".",
"strip",
"... | Ask for confirmation, given a ``prompt`` and return a boolean value. | [
"Ask",
"for",
"confirmation",
"given",
"a",
"prompt",
"and",
"return",
"a",
"boolean",
"value",
"."
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/engine/utils/__init__.py#L20-L34 |
gem/oq-engine | openquake/risklib/asset.py | build_asset_array | def build_asset_array(assets_by_site, tagnames=(), time_event=None):
"""
:param assets_by_site: a list of lists of assets
:param tagnames: a list of tag names
:returns: an array `assetcol`
"""
for assets in assets_by_site:
if len(assets):
first_asset = assets[0]
b... | python | def build_asset_array(assets_by_site, tagnames=(), time_event=None):
for assets in assets_by_site:
if len(assets):
first_asset = assets[0]
break
else:
raise ValueError('There are no assets!')
loss_types = []
occupancy_periods = []
for name in sorted(fir... | [
"def",
"build_asset_array",
"(",
"assets_by_site",
",",
"tagnames",
"=",
"(",
")",
",",
"time_event",
"=",
"None",
")",
":",
"for",
"assets",
"in",
"assets_by_site",
":",
"if",
"len",
"(",
"assets",
")",
":",
"first_asset",
"=",
"assets",
"[",
"0",
"]",
... | :param assets_by_site: a list of lists of assets
:param tagnames: a list of tag names
:returns: an array `assetcol` | [
":",
"param",
"assets_by_site",
":",
"a",
"list",
"of",
"lists",
"of",
"assets",
":",
"param",
"tagnames",
":",
"a",
"list",
"of",
"tag",
"names",
":",
"returns",
":",
"an",
"array",
"assetcol"
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/risklib/asset.py#L583-L655 |
gem/oq-engine | openquake/risklib/asset.py | _get_exposure | def _get_exposure(fname, stop=None):
"""
:param fname:
path of the XML file containing the exposure
:param stop:
node at which to stop parsing (or None)
:returns:
a pair (Exposure instance, list of asset nodes)
"""
[exposure] = nrml.read(fname, stop=stop)
if not expos... | python | def _get_exposure(fname, stop=None):
[exposure] = nrml.read(fname, stop=stop)
if not exposure.tag.endswith('exposureModel'):
raise InvalidFile('%s: expected exposureModel, got %s' %
(fname, exposure.tag))
description = exposure.description
try:
conversions ... | [
"def",
"_get_exposure",
"(",
"fname",
",",
"stop",
"=",
"None",
")",
":",
"[",
"exposure",
"]",
"=",
"nrml",
".",
"read",
"(",
"fname",
",",
"stop",
"=",
"stop",
")",
"if",
"not",
"exposure",
".",
"tag",
".",
"endswith",
"(",
"'exposureModel'",
")",
... | :param fname:
path of the XML file containing the exposure
:param stop:
node at which to stop parsing (or None)
:returns:
a pair (Exposure instance, list of asset nodes) | [
":",
"param",
"fname",
":",
"path",
"of",
"the",
"XML",
"file",
"containing",
"the",
"exposure",
":",
"param",
"stop",
":",
"node",
"at",
"which",
"to",
"stop",
"parsing",
"(",
"or",
"None",
")",
":",
"returns",
":",
"a",
"pair",
"(",
"Exposure",
"in... | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/risklib/asset.py#L665-L762 |
gem/oq-engine | openquake/risklib/asset.py | CostCalculator.get_units | def get_units(self, loss_types):
"""
:param: a list of loss types
:returns: an array of units as byte strings, suitable for HDF5
"""
lst = []
for lt in loss_types:
if lt.endswith('_ins'):
lt = lt[:-4]
if lt == 'occupants':
... | python | def get_units(self, loss_types):
lst = []
for lt in loss_types:
if lt.endswith('_ins'):
lt = lt[:-4]
if lt == 'occupants':
unit = 'people'
else:
unit = self.units[lt]
lst.append(encode(unit))
... | [
"def",
"get_units",
"(",
"self",
",",
"loss_types",
")",
":",
"lst",
"=",
"[",
"]",
"for",
"lt",
"in",
"loss_types",
":",
"if",
"lt",
".",
"endswith",
"(",
"'_ins'",
")",
":",
"lt",
"=",
"lt",
"[",
":",
"-",
"4",
"]",
"if",
"lt",
"==",
"'occupa... | :param: a list of loss types
:returns: an array of units as byte strings, suitable for HDF5 | [
":",
"param",
":",
"a",
"list",
"of",
"loss",
"types",
":",
"returns",
":",
"an",
"array",
"of",
"units",
"as",
"byte",
"strings",
"suitable",
"for",
"HDF5"
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/risklib/asset.py#L82-L96 |
gem/oq-engine | openquake/risklib/asset.py | Asset.value | def value(self, loss_type, time_event=None):
"""
:returns: the total asset value for `loss_type`
"""
if loss_type == 'occupants':
return self.values['occupants_' + str(time_event)]
try: # extract from the cache
val = self._cost[loss_type]
except K... | python | def value(self, loss_type, time_event=None):
if loss_type == 'occupants':
return self.values['occupants_' + str(time_event)]
try:
val = self._cost[loss_type]
except KeyError:
val = self.calc(loss_type, self.values, self.area, self.number)
... | [
"def",
"value",
"(",
"self",
",",
"loss_type",
",",
"time_event",
"=",
"None",
")",
":",
"if",
"loss_type",
"==",
"'occupants'",
":",
"return",
"self",
".",
"values",
"[",
"'occupants_'",
"+",
"str",
"(",
"time_event",
")",
"]",
"try",
":",
"# extract fr... | :returns: the total asset value for `loss_type` | [
":",
"returns",
":",
"the",
"total",
"asset",
"value",
"for",
"loss_type"
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/risklib/asset.py#L195-L206 |
gem/oq-engine | openquake/risklib/asset.py | Asset.deductible | def deductible(self, loss_type, dummy=None):
"""
:returns: the deductible fraction of the asset cost for `loss_type`
"""
val = self.calc(loss_type, self.deductibles, self.area, self.number)
if self.calc.deduct_abs: # convert to relative value
return val / self.calc(l... | python | def deductible(self, loss_type, dummy=None):
val = self.calc(loss_type, self.deductibles, self.area, self.number)
if self.calc.deduct_abs:
return val / self.calc(loss_type, self.values,
self.area, self.number)
else:
return val | [
"def",
"deductible",
"(",
"self",
",",
"loss_type",
",",
"dummy",
"=",
"None",
")",
":",
"val",
"=",
"self",
".",
"calc",
"(",
"loss_type",
",",
"self",
".",
"deductibles",
",",
"self",
".",
"area",
",",
"self",
".",
"number",
")",
"if",
"self",
".... | :returns: the deductible fraction of the asset cost for `loss_type` | [
":",
"returns",
":",
"the",
"deductible",
"fraction",
"of",
"the",
"asset",
"cost",
"for",
"loss_type"
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/risklib/asset.py#L208-L217 |
gem/oq-engine | openquake/risklib/asset.py | Asset.insurance_limit | def insurance_limit(self, loss_type, dummy=None):
"""
:returns: the limit fraction of the asset cost for `loss_type`
"""
val = self.calc(loss_type, self.insurance_limits, self.area,
self.number)
if self.calc.limit_abs: # convert to relative value
... | python | def insurance_limit(self, loss_type, dummy=None):
val = self.calc(loss_type, self.insurance_limits, self.area,
self.number)
if self.calc.limit_abs:
return val / self.calc(loss_type, self.values,
self.area, self.number)
... | [
"def",
"insurance_limit",
"(",
"self",
",",
"loss_type",
",",
"dummy",
"=",
"None",
")",
":",
"val",
"=",
"self",
".",
"calc",
"(",
"loss_type",
",",
"self",
".",
"insurance_limits",
",",
"self",
".",
"area",
",",
"self",
".",
"number",
")",
"if",
"s... | :returns: the limit fraction of the asset cost for `loss_type` | [
":",
"returns",
":",
"the",
"limit",
"fraction",
"of",
"the",
"asset",
"cost",
"for",
"loss_type"
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/risklib/asset.py#L219-L229 |
gem/oq-engine | openquake/risklib/asset.py | Asset.retrofitted | def retrofitted(self):
"""
:returns: the asset retrofitted value
"""
return self.calc('structural', {'structural': self._retrofitted},
self.area, self.number) | python | def retrofitted(self):
return self.calc('structural', {'structural': self._retrofitted},
self.area, self.number) | [
"def",
"retrofitted",
"(",
"self",
")",
":",
"return",
"self",
".",
"calc",
"(",
"'structural'",
",",
"{",
"'structural'",
":",
"self",
".",
"_retrofitted",
"}",
",",
"self",
".",
"area",
",",
"self",
".",
"number",
")"
] | :returns: the asset retrofitted value | [
":",
"returns",
":",
"the",
"asset",
"retrofitted",
"value"
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/risklib/asset.py#L231-L236 |
gem/oq-engine | openquake/risklib/asset.py | Asset.tagmask | def tagmask(self, tags):
"""
:returns: a boolean array with True where the assets has tags
"""
mask = numpy.zeros(len(tags), bool)
for t, tag in enumerate(tags):
tagname, tagvalue = tag.split('=')
mask[t] = self.tagvalue(tagname) == tagvalue
return... | python | def tagmask(self, tags):
mask = numpy.zeros(len(tags), bool)
for t, tag in enumerate(tags):
tagname, tagvalue = tag.split('=')
mask[t] = self.tagvalue(tagname) == tagvalue
return mask | [
"def",
"tagmask",
"(",
"self",
",",
"tags",
")",
":",
"mask",
"=",
"numpy",
".",
"zeros",
"(",
"len",
"(",
"tags",
")",
",",
"bool",
")",
"for",
"t",
",",
"tag",
"in",
"enumerate",
"(",
"tags",
")",
":",
"tagname",
",",
"tagvalue",
"=",
"tag",
... | :returns: a boolean array with True where the assets has tags | [
":",
"returns",
":",
"a",
"boolean",
"array",
"with",
"True",
"where",
"the",
"assets",
"has",
"tags"
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/risklib/asset.py#L238-L246 |
gem/oq-engine | openquake/risklib/asset.py | TagCollection.add | def add(self, tagname, tagvalue):
"""
:returns: numeric index associated to the tag
"""
dic = getattr(self, tagname + '_idx')
try:
return dic[tagvalue]
except KeyError:
dic[tagvalue] = idx = len(dic)
getattr(self, tagname).append(tagval... | python | def add(self, tagname, tagvalue):
dic = getattr(self, tagname + '_idx')
try:
return dic[tagvalue]
except KeyError:
dic[tagvalue] = idx = len(dic)
getattr(self, tagname).append(tagvalue)
if idx > TWO16:
raise InvalidFile('co... | [
"def",
"add",
"(",
"self",
",",
"tagname",
",",
"tagvalue",
")",
":",
"dic",
"=",
"getattr",
"(",
"self",
",",
"tagname",
"+",
"'_idx'",
")",
"try",
":",
"return",
"dic",
"[",
"tagvalue",
"]",
"except",
"KeyError",
":",
"dic",
"[",
"tagvalue",
"]",
... | :returns: numeric index associated to the tag | [
":",
"returns",
":",
"numeric",
"index",
"associated",
"to",
"the",
"tag"
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/risklib/asset.py#L287-L299 |
gem/oq-engine | openquake/risklib/asset.py | TagCollection.add_tags | def add_tags(self, dic, prefix):
"""
:param dic: a dictionary tagname -> tagvalue
:returns: a list of tag indices, one per tagname
"""
# fill missing tagvalues with "?", raise an error for unknown tagnames
idxs = []
for tagname in self.tagnames:
if tag... | python | def add_tags(self, dic, prefix):
idxs = []
for tagname in self.tagnames:
if tagname in ('exposure', 'country'):
idxs.append(self.add(tagname, prefix))
continue
try:
tagvalue = dic.pop(tagname)
except Ke... | [
"def",
"add_tags",
"(",
"self",
",",
"dic",
",",
"prefix",
")",
":",
"# fill missing tagvalues with \"?\", raise an error for unknown tagnames",
"idxs",
"=",
"[",
"]",
"for",
"tagname",
"in",
"self",
".",
"tagnames",
":",
"if",
"tagname",
"in",
"(",
"'exposure'",
... | :param dic: a dictionary tagname -> tagvalue
:returns: a list of tag indices, one per tagname | [
":",
"param",
"dic",
":",
"a",
"dictionary",
"tagname",
"-",
">",
"tagvalue",
":",
"returns",
":",
"a",
"list",
"of",
"tag",
"indices",
"one",
"per",
"tagname"
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/risklib/asset.py#L301-L325 |
gem/oq-engine | openquake/risklib/asset.py | TagCollection.get_tag | def get_tag(self, tagname, tagidx):
"""
:returns: the tag associated to the given tagname and tag index
"""
return '%s=%s' % (tagname, decode(getattr(self, tagname)[tagidx])) | python | def get_tag(self, tagname, tagidx):
return '%s=%s' % (tagname, decode(getattr(self, tagname)[tagidx])) | [
"def",
"get_tag",
"(",
"self",
",",
"tagname",
",",
"tagidx",
")",
":",
"return",
"'%s=%s'",
"%",
"(",
"tagname",
",",
"decode",
"(",
"getattr",
"(",
"self",
",",
"tagname",
")",
"[",
"tagidx",
"]",
")",
")"
] | :returns: the tag associated to the given tagname and tag index | [
":",
"returns",
":",
"the",
"tag",
"associated",
"to",
"the",
"given",
"tagname",
"and",
"tag",
"index"
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/risklib/asset.py#L332-L336 |
gem/oq-engine | openquake/risklib/asset.py | TagCollection.get_tagvalues | def get_tagvalues(self, tagnames, tagidxs):
"""
:returns: the tag associated to the given tagname and tag index
"""
values = tuple(getattr(self, tagname)[tagidx + 1]
for tagidx, tagname in zip(tagidxs, tagnames))
return values | python | def get_tagvalues(self, tagnames, tagidxs):
values = tuple(getattr(self, tagname)[tagidx + 1]
for tagidx, tagname in zip(tagidxs, tagnames))
return values | [
"def",
"get_tagvalues",
"(",
"self",
",",
"tagnames",
",",
"tagidxs",
")",
":",
"values",
"=",
"tuple",
"(",
"getattr",
"(",
"self",
",",
"tagname",
")",
"[",
"tagidx",
"+",
"1",
"]",
"for",
"tagidx",
",",
"tagname",
"in",
"zip",
"(",
"tagidxs",
",",... | :returns: the tag associated to the given tagname and tag index | [
":",
"returns",
":",
"the",
"tag",
"associated",
"to",
"the",
"given",
"tagname",
"and",
"tag",
"index"
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/risklib/asset.py#L338-L344 |
gem/oq-engine | openquake/risklib/asset.py | TagCollection.gen_tags | def gen_tags(self, tagname):
"""
:yields: the tags associated to the given tagname
"""
for tagvalue in getattr(self, tagname):
yield '%s=%s' % (tagname, decode(tagvalue)) | python | def gen_tags(self, tagname):
for tagvalue in getattr(self, tagname):
yield '%s=%s' % (tagname, decode(tagvalue)) | [
"def",
"gen_tags",
"(",
"self",
",",
"tagname",
")",
":",
"for",
"tagvalue",
"in",
"getattr",
"(",
"self",
",",
"tagname",
")",
":",
"yield",
"'%s=%s'",
"%",
"(",
"tagname",
",",
"decode",
"(",
"tagvalue",
")",
")"
] | :yields: the tags associated to the given tagname | [
":",
"yields",
":",
"the",
"tags",
"associated",
"to",
"the",
"given",
"tagname"
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/risklib/asset.py#L346-L351 |
gem/oq-engine | openquake/risklib/asset.py | TagCollection.agg_shape | def agg_shape(self, shp, aggregate_by):
"""
:returns: a shape shp + (T, ...) depending on the tagnames
"""
return shp + tuple(
len(getattr(self, tagname)) - 1 for tagname in aggregate_by) | python | def agg_shape(self, shp, aggregate_by):
return shp + tuple(
len(getattr(self, tagname)) - 1 for tagname in aggregate_by) | [
"def",
"agg_shape",
"(",
"self",
",",
"shp",
",",
"aggregate_by",
")",
":",
"return",
"shp",
"+",
"tuple",
"(",
"len",
"(",
"getattr",
"(",
"self",
",",
"tagname",
")",
")",
"-",
"1",
"for",
"tagname",
"in",
"aggregate_by",
")"
] | :returns: a shape shp + (T, ...) depending on the tagnames | [
":",
"returns",
":",
"a",
"shape",
"shp",
"+",
"(",
"T",
"...",
")",
"depending",
"on",
"the",
"tagnames"
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/risklib/asset.py#L353-L358 |
gem/oq-engine | openquake/risklib/asset.py | AssetCollection.num_taxonomies_by_site | def num_taxonomies_by_site(self):
"""
:returns: an array with the number of assets per each site
"""
dic = general.group_array(self.array, 'site_id')
num_taxonomies = numpy.zeros(self.tot_sites, U32)
for sid, arr in dic.items():
num_taxonomies[sid] = len(numpy... | python | def num_taxonomies_by_site(self):
dic = general.group_array(self.array, 'site_id')
num_taxonomies = numpy.zeros(self.tot_sites, U32)
for sid, arr in dic.items():
num_taxonomies[sid] = len(numpy.unique(arr['taxonomy']))
return num_taxonomies | [
"def",
"num_taxonomies_by_site",
"(",
"self",
")",
":",
"dic",
"=",
"general",
".",
"group_array",
"(",
"self",
".",
"array",
",",
"'site_id'",
")",
"num_taxonomies",
"=",
"numpy",
".",
"zeros",
"(",
"self",
".",
"tot_sites",
",",
"U32",
")",
"for",
"sid... | :returns: an array with the number of assets per each site | [
":",
"returns",
":",
"an",
"array",
"with",
"the",
"number",
"of",
"assets",
"per",
"each",
"site"
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/risklib/asset.py#L426-L434 |
gem/oq-engine | openquake/risklib/asset.py | AssetCollection.get_aids_by_tag | def get_aids_by_tag(self):
"""
:returns: dict tag -> asset ordinals
"""
aids_by_tag = general.AccumDict(accum=set())
for aid, ass in enumerate(self):
for tagname in self.tagnames:
tag = self.tagcol.get_tag(tagname, ass[tagname])
aids_by... | python | def get_aids_by_tag(self):
aids_by_tag = general.AccumDict(accum=set())
for aid, ass in enumerate(self):
for tagname in self.tagnames:
tag = self.tagcol.get_tag(tagname, ass[tagname])
aids_by_tag[tag].add(aid)
return aids_by_tag | [
"def",
"get_aids_by_tag",
"(",
"self",
")",
":",
"aids_by_tag",
"=",
"general",
".",
"AccumDict",
"(",
"accum",
"=",
"set",
"(",
")",
")",
"for",
"aid",
",",
"ass",
"in",
"enumerate",
"(",
"self",
")",
":",
"for",
"tagname",
"in",
"self",
".",
"tagna... | :returns: dict tag -> asset ordinals | [
":",
"returns",
":",
"dict",
"tag",
"-",
">",
"asset",
"ordinals"
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/risklib/asset.py#L436-L445 |
gem/oq-engine | openquake/risklib/asset.py | AssetCollection.assets_by_site | def assets_by_site(self):
"""
:returns: numpy array of lists with the assets by each site
"""
assets_by_site = [[] for sid in range(self.tot_sites)]
for i, ass in enumerate(self.array):
assets_by_site[ass['site_id']].append(self[i])
return numpy.array(assets_b... | python | def assets_by_site(self):
assets_by_site = [[] for sid in range(self.tot_sites)]
for i, ass in enumerate(self.array):
assets_by_site[ass['site_id']].append(self[i])
return numpy.array(assets_by_site) | [
"def",
"assets_by_site",
"(",
"self",
")",
":",
"assets_by_site",
"=",
"[",
"[",
"]",
"for",
"sid",
"in",
"range",
"(",
"self",
".",
"tot_sites",
")",
"]",
"for",
"i",
",",
"ass",
"in",
"enumerate",
"(",
"self",
".",
"array",
")",
":",
"assets_by_sit... | :returns: numpy array of lists with the assets by each site | [
":",
"returns",
":",
"numpy",
"array",
"of",
"lists",
"with",
"the",
"assets",
"by",
"each",
"site"
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/risklib/asset.py#L454-L461 |
gem/oq-engine | openquake/risklib/asset.py | AssetCollection.aggregate_by | def aggregate_by(self, tagnames, array):
"""
:param tagnames: a list of valid tag names
:param array: an array with the same length as the asset collection
:returns: an array of aggregate values with the proper shape
"""
missing = set(tagnames) - set(self.tagcol.tagnames)... | python | def aggregate_by(self, tagnames, array):
missing = set(tagnames) - set(self.tagcol.tagnames)
if missing:
raise ValueError('Unknown tagname(s) %s' % missing)
A, *shp = array.shape
if A != len(self):
raise ValueError('The array must have length %d, got %d' ... | [
"def",
"aggregate_by",
"(",
"self",
",",
"tagnames",
",",
"array",
")",
":",
"missing",
"=",
"set",
"(",
"tagnames",
")",
"-",
"set",
"(",
"self",
".",
"tagcol",
".",
"tagnames",
")",
"if",
"missing",
":",
"raise",
"ValueError",
"(",
"'Unknown tagname(s)... | :param tagnames: a list of valid tag names
:param array: an array with the same length as the asset collection
:returns: an array of aggregate values with the proper shape | [
":",
"param",
"tagnames",
":",
"a",
"list",
"of",
"valid",
"tag",
"names",
":",
"param",
"array",
":",
"an",
"array",
"with",
"the",
"same",
"length",
"as",
"the",
"asset",
"collection",
":",
"returns",
":",
"an",
"array",
"of",
"aggregate",
"values",
... | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/risklib/asset.py#L463-L482 |
gem/oq-engine | openquake/risklib/asset.py | AssetCollection.agg_value | def agg_value(self, *tagnames):
"""
:param tagnames:
tagnames of lengths T1, T2, ... respectively
:returns:
the values of the exposure aggregated by tagnames as an array
of shape (T1, T2, ..., L)
"""
aval = numpy.zeros((len(self), len(self.loss... | python | def agg_value(self, *tagnames):
aval = numpy.zeros((len(self), len(self.loss_types)), F32)
for asset in self:
for lti, lt in enumerate(self.loss_types):
if lt == 'occupants':
aval[asset['ordinal'], lti] = asset[lt + '_None']
else... | [
"def",
"agg_value",
"(",
"self",
",",
"*",
"tagnames",
")",
":",
"aval",
"=",
"numpy",
".",
"zeros",
"(",
"(",
"len",
"(",
"self",
")",
",",
"len",
"(",
"self",
".",
"loss_types",
")",
")",
",",
"F32",
")",
"# (A, L)",
"for",
"asset",
"in",
"self... | :param tagnames:
tagnames of lengths T1, T2, ... respectively
:returns:
the values of the exposure aggregated by tagnames as an array
of shape (T1, T2, ..., L) | [
":",
"param",
"tagnames",
":",
"tagnames",
"of",
"lengths",
"T1",
"T2",
"...",
"respectively",
":",
"returns",
":",
"the",
"values",
"of",
"the",
"exposure",
"aggregated",
"by",
"tagnames",
"as",
"an",
"array",
"of",
"shape",
"(",
"T1",
"T2",
"...",
"L",... | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/risklib/asset.py#L484-L499 |
gem/oq-engine | openquake/risklib/asset.py | AssetCollection.reduce | def reduce(self, sitecol):
"""
:returns: a reduced AssetCollection on the given sitecol
"""
ok_indices = numpy.sum(
[self.array['site_id'] == sid for sid in sitecol.sids],
axis=0, dtype=bool)
new = object.__new__(self.__class__)
vars(new).update(va... | python | def reduce(self, sitecol):
ok_indices = numpy.sum(
[self.array['site_id'] == sid for sid in sitecol.sids],
axis=0, dtype=bool)
new = object.__new__(self.__class__)
vars(new).update(vars(self))
new.array = self.array[ok_indices]
new.array['ordinal'... | [
"def",
"reduce",
"(",
"self",
",",
"sitecol",
")",
":",
"ok_indices",
"=",
"numpy",
".",
"sum",
"(",
"[",
"self",
".",
"array",
"[",
"'site_id'",
"]",
"==",
"sid",
"for",
"sid",
"in",
"sitecol",
".",
"sids",
"]",
",",
"axis",
"=",
"0",
",",
"dtyp... | :returns: a reduced AssetCollection on the given sitecol | [
":",
"returns",
":",
"a",
"reduced",
"AssetCollection",
"on",
"the",
"given",
"sitecol"
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/risklib/asset.py#L501-L513 |
gem/oq-engine | openquake/risklib/asset.py | AssetCollection.reduce_also | def reduce_also(self, sitecol):
"""
:returns: a reduced AssetCollection on the given sitecol
NB: diffently from .reduce, also the SiteCollection is reduced
and turned into a complete site collection.
"""
array = []
asset_refs = []
for idx, sid in enumerate... | python | def reduce_also(self, sitecol):
array = []
asset_refs = []
for idx, sid in enumerate(sitecol.sids):
mask = self.array['site_id'] == sid
arr = self.array[mask]
arr['site_id'] = idx
array.append(arr)
asset_refs.append(self.asset_... | [
"def",
"reduce_also",
"(",
"self",
",",
"sitecol",
")",
":",
"array",
"=",
"[",
"]",
"asset_refs",
"=",
"[",
"]",
"for",
"idx",
",",
"sid",
"in",
"enumerate",
"(",
"sitecol",
".",
"sids",
")",
":",
"mask",
"=",
"self",
".",
"array",
"[",
"'site_id'... | :returns: a reduced AssetCollection on the given sitecol
NB: diffently from .reduce, also the SiteCollection is reduced
and turned into a complete site collection. | [
":",
"returns",
":",
"a",
"reduced",
"AssetCollection",
"on",
"the",
"given",
"sitecol",
"NB",
":",
"diffently",
"from",
".",
"reduce",
"also",
"the",
"SiteCollection",
"is",
"reduced",
"and",
"turned",
"into",
"a",
"complete",
"site",
"collection",
"."
] | train | https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/risklib/asset.py#L515-L536 |
End of preview. Expand in Data Studio
YAML Metadata Warning:empty or missing yaml metadata in repo card
Check out the documentation for more information.
Cleaning
Unlike the original dataset, the func_code_string column was updated to remove any comments and keep just the code.
The original version can still be found in the whole_func_string.
import re
def remove_comments_docstrings(code, language):
if language == 'python':
# Remove docstrings
code = re.sub(r'"""(.*?)"""', '', code, flags=re.DOTALL)
code = re.sub(r"'''(.*?)'''", '', code, flags=re.DOTALL)
# Remove comments
code = re.sub(r'#.*', '', code)
elif language == 'java' or language == 'javascript':
# Remove multiline comments
code = re.sub(r'/\*.*?\*/', '', code, flags=re.DOTALL)
# Remove single line comments
code = re.sub(r'//.*', '', code)
elif language == 'go':
# Similar to Java/Javascript
code = re.sub(r'/\*.*?\*/', '', code, flags=re.DOTALL)
code = re.sub(r'//.*', '', code)
elif language == 'ruby':
# Remove multiline comments
code = re.sub(r'=begin.*?=end', '', code, flags=re.DOTALL)
# Remove single line comments
code = re.sub(r'#.*', '', code)
elif language == 'php':
# Remove multiline comments
code = re.sub(r'/\*.*?\*/', '', code, flags=re.DOTALL)
# Remove single line and hash comments
code = re.sub(r'//.*', '', code)
code = re.sub(r'#.*', '', code)
return code.strip()
The validity of that snippet can be tested with the following example:
# Example DataFrame
import pandas as pd
example = {
'language': ['python', 'java', 'javascript', 'go', 'ruby', 'php'],
'func_code_string': [
'"""Example docstring""" def foo(): # This is a comment\n return 1',
'/** Java doc */ public class Test { // Comment\n public void method() {} }',
'/* JS doc */ function test() { // Comment\n return true; }',
'/* Go doc */ package main // Import comment\nimport "fmt"',
'=begin Ruby doc =end def foo # Comment\n 1 + 1 end',
'<?php /* PHP doc */ // Comment\necho "Hello"; # Another comment ?>'
]}
example_df = pd.DataFrame(example)
example_df['cleaned_code'] = example_df.apply(lambda x: remove_comments_docstrings(x['func_code_string'], x['language']), axis=1)
print(example_df[['language', 'cleaned_code']])
- Downloads last month
- 45