Datasets:

turmex2
/

pgc-substance-use

CHR int64 1 22 ⌀	SNP large_stringlengths 3 11	BP float64 8.55k 249M ⌀	A1 large_stringclasses 4 values	A2 large_stringclasses 4 values	OR float64 0.74 1.25 ⌀	P float64 0 1	N int64 92.6k 92.6k ⌀	Chr float64 1 22 ⌀	Beta float64 -0.05 0.04 ⌀
4	rs10000015	84,143,987	G	A	0.979	0.27727	92,630	null	null
3	rs1000002	183,635,768	T	C	0.981	0.364765	92,630	null	null
4	rs10000022	115,130,850	T	A	0.979	0.709102	92,630	null	null
4	rs10000059	10,722,339	C	A	1.023	0.69679	92,630	null	null
4	rs10000074	40,002,696	T	C	0.978	0.137014	92,630	null	null
4	rs10000082	167,310,192	T	C	1.008	0.957929	92,630	null	null
4	rs10000101	171,716,087	C	A	0.984	0.173554	92,630	null	null
4	rs10000104	10,191,766	G	A	1.012	0.931157	92,630	null	null
4	rs10000109	91,367,269	T	A	1.019	0.588589	92,630	null	null
4	rs10000111	106,918,068	A	G	1.054	0.203365	92,630	null	null
4	rs10000113	180,984,096	G	C	1.062	0.538439	92,630	null	null
9	rs1000012	135,703,041	C	A	0.986	0.806097	92,630	null	null
4	rs10000125	60,567,876	T	C	0.969	0.390676	92,630	null	null
4	rs10000130	76,939,335	T	C	0.99	0.508771	92,630	null	null
4	rs10000135	71,595,140	T	A	0.988	0.739491	92,630	null	null
4	rs10000137	156,102,176	T	G	0.99	0.63349	92,630	null	null
4	rs10000149	121,319,550	T	A	0.965	0.733261	92,630	null	null
4	rs10000150	32,039,123	A	G	0.984	0.789556	92,630	null	null
4	rs10000160	69,033,099	A	G	1.023	0.737449	92,630	null	null
4	rs10000166	188,999,900	T	C	1.014	0.199073	92,630	null	null
4	rs10000171	188,611,288	T	A	0.993	0.87367	92,630	null	null
4	rs10000176	107,374,211	A	G	1.02	0.252784	92,630	null	null
4	rs10000206	9,611,952	C	T	1.013	0.686015	92,630	null	null
4	rs10000207	139,529,133	C	T	0.988	0.755334	92,630	null	null
13	rs1000022	100,461,219	C	T	0.974	0.415648	92,630	null	null
4	rs10000230	120,261,439	C	T	1.016	0.95563	92,630	null	null
4	rs10000237	22,145,261	C	G	1.014	0.629153	92,630	null	null
4	rs10000243	29,768,986	T	C	0.968	0.555086	92,630	null	null
4	rs10000245	112,571,047	G	A	1.012	0.382957	92,630	null	null
4	rs10000246	102,322,960	A	G	0.982	0.035572	92,630	null	null
4	rs10000254	178,417,106	A	G	0.985	0.7222	92,630	null	null
4	rs10000264	6,607,171	A	G	1.043	0.056068	92,630	null	null
4	rs10000272	189,690,383	C	T	0.987	0.31583	92,630	null	null
4	rs10000286	32,037,931	G	A	1.031	0.072808	92,630	null	null
4	rs10000288	48,357,527	G	A	1.011	0.538539	92,630	null	null
4	rs10000302	42,530,746	T	C	1.058	0.131092	92,630	null	null
4	rs10000305	184,245,682	A	G	0.969	0.024717	92,630	null	null
4	rs10000309	58,752,599	G	T	1.011	0.447473	92,630	null	null
4	rs10000311	53,507,945	C	T	0.959	0.112502	92,630	null	null
4	rs10000331	43,442,236	G	A	1.02	0.043204	92,630	null	null
4	rs10000351	22,145,385	A	G	1.014	0.612967	92,630	null	null
4	rs10000360	178,417,192	T	G	0.985	0.718659	92,630	null	null
4	rs10000379	173,695,104	C	G	1.009	0.504508	92,630	null	null
4	rs10000389	59,631,105	C	G	0.986	0.7193	92,630	null	null
4	rs10000397	4,447,064	T	C	1.007	0.931918	92,630	null	null
4	rs10000399	11,597,466	C	G	1.024	0.473642	92,630	null	null
4	rs10000413	43,539,670	G	C	1.022	0.433657	92,630	null	null
4	rs10000417	172,283,260	G	A	1.019	0.782894	92,630	null	null
4	rs10000424	123,444,256	T	C	1.009	0.929161	92,630	null	null
4	rs10000425	150,249,741	T	C	0.962	0.855158	92,630	null	null
4	rs10000427	135,274,980	T	C	1.009	0.985777	92,630	null	null
4	rs10000430	126,572,136	T	C	0.983	0.548461	92,630	null	null
4	rs10000433	6,960,801	A	G	0.985	0.513271	92,630	null	null
4	rs10000461	56,978,379	T	C	0.992	0.974443	92,630	null	null
4	rs10000465	120,835,814	A	G	0.982	0.232725	92,630	null	null
4	rs10000470	21,781,155	G	A	0.984	0.385228	92,630	null	null
4	rs10000473	178,417,317	C	G	0.985	0.688962	92,630	null	null
4	rs10000476	173,119,263	C	A	1.01	0.906775	92,630	null	null
4	rs10000491	151,529,275	G	A	1.012	0.156419	92,630	null	null
4	rs10000499	179,815,215	G	A	1.013	0.390078	92,630	null	null
4	rs10000505	28,482,812	G	A	1.028	0.462137	92,630	null	null
4	rs10000518	11,504,491	A	G	0.981	0.031456	92,630	null	null
4	rs10000521	126,459,422	T	C	0.981	0.436344	92,630	null	null
2	rs1000053	12,790,328	T	C	0.985	0.295265	92,630	null	null
4	rs10000534	190,343,380	T	C	1.01	0.603313	92,630	null	null
4	rs10000544	120,270,705	A	G	0.991	0.629327	92,630	null	null
4	rs10000551	28,274,979	T	A	0.972	0.69238	92,630	null	null
5	rs1000056	94,322,982	C	T	0.988	0.250219	92,630	null	null
4	rs10000565	173,660,383	G	A	1.009	0.649518	92,630	null	null
4	rs10000568	47,047,985	G	A	0.981	0.566122	92,630	null	null
4	rs10000572	24,706,793	T	C	0.982	0.428923	92,630	null	null
4	rs10000573	99,048,785	C	G	1.008	0.912932	92,630	null	null
4	rs10000575	44,934,229	G	T	0.992	0.830448	92,630	null	null
4	rs10000577	126,572,133	A	G	0.983	0.548461	92,630	null	null
4	rs10000579	138,401,809	G	A	0.986	0.321054	92,630	null	null
4	rs10000580	5,166,703	C	G	1.018	0.335953	92,630	null	null
4	rs10000585	171,600,214	T	C	1.013	0.296105	92,630	null	null
4	rs10000588	138,401,844	G	A	0.987	0.386918	92,630	null	null
4	rs10000589	173,695,375	A	G	1.01	0.487742	92,630	null	null
4	rs10000595	53,646,007	A	C	0.984	0.639649	92,630	null	null
4	rs10000597	10,132,105	A	G	1.021	0.575378	92,630	null	null
4	rs10000607	173,628,125	G	A	0.985	0.553897	92,630	null	null
4	rs10000608	154,638,085	T	C	1.026	0.471832	92,630	null	null
4	rs10000609	25,816,048	A	G	1.027	0.012801	92,630	null	null
4	rs10000620	113,203,204	A	G	0.986	0.341254	92,630	null	null
4	rs10000625	19,401,033	C	T	0.979	0.420384	92,630	null	null
4	rs10000642	93,057,077	C	T	1.031	0.509011	92,630	null	null
4	rs10000643	117,450,237	C	A	0.968	0.219947	92,630	null	null
4	rs10000644	116,400,995	G	C	0.988	0.150919	92,630	null	null
4	rs10000650	134,318,904	T	A	1.014	0.829152	92,630	null	null
4	rs10000652	64,910,970	A	T	1.014	0.806677	92,630	null	null
4	rs10000655	151,529,470	C	G	1.009	0.610546	92,630	null	null
4	rs10000658	29,498,521	A	G	1.024	0.359676	92,630	null	null
6	rs1000066	128,239,412	A	C	0.966	0.135799	92,630	null	null
4	rs10000660	78,268,196	G	A	1.023	0.051627	92,630	null	null
4	rs10000671	97,542,014	C	T	1.027	0.640164	92,630	null	null
4	rs10000678	20,249,400	C	T	1.014	0.899646	92,630	null	null
4	rs10000683	134,474,233	T	C	1.03	0.029157	92,630	null	null
4	rs10000685	76,168,294	T	G	0.991	0.721714	92,630	null	null
4	rs10000700	113,203,271	A	G	0.988	0.389951	92,630	null	null

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Substance Use Disorders GWAS Summary Statistics (PGC)

Mirror of Psychiatric Genomics Consortium (PGC) summary statistics for Substance Use Disorders (SUD2023), redistributed in a single Apache Parquet file for use with OpenMed Genomics.

Source

Primary citation: Hatoum et al., Nature Mental Health 2023
Original distributor: Psychiatric Genomics Consortium (https://pgc.unc.edu/for-researchers/download-results/)

This mirror exists only because the upstream OpenMed mirror became inaccessible. No modifications have been made to the underlying data; per-shard parquet files were concatenated into a single file for convenient streaming.

File

pgc-substance-use_SUD2023.parquet -- one Apache Parquet file containing the full summary statistics table in the PGC's published schema (SNP, CHR, BP, A1, A2, FRQ, OR/BETA, SE, P, ...).

Usage

import polars as pl
df = pl.read_parquet(
    "https://huggingface.co/datasets/turmex2/pgc-substance-use/resolve/main/pgc-substance-use_SUD2023.parquet"
)

License & terms of use

PGC summary statistics are released for non-commercial research use only. Do not attempt to re-identify individuals. Results derived from these data are not a clinical diagnosis. See the original publication for the full data-use agreement.

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Substance Use Disorders GWAS Summary Statistics (PGC)

Source

File

Usage

License & terms of use

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