Datasets:
CHR large_stringclasses 105
values | SNP large_stringlengths 3 16 ⌀ | BP float64 828 249M ⌀ | A1 large_stringclasses 4
values | A2 large_stringclasses 4
values | FRQ_A_6630 float64 0.01 0.99 ⌀ | FRQ_U_6018 float64 0.01 0.99 ⌀ | INFO float64 0.11 2 ⌀ | OR float64 0.23 4.38 ⌀ | SE float64 0.01 1.79 ⌀ | P float64 0 1 ⌀ | ngt float64 0 101 ⌀ | Direction large_stringlengths 2 90 ⌀ | HetISqt float64 0 83 ⌀ | HetDf float64 0 89 ⌀ | HetPVa float64 0 1 ⌀ | Nca float64 178 67.3k ⌀ | Nco float64 245 93.5k ⌀ | Neff float64 206 37.1k ⌀ | FRQ_A_32446 float64 0.01 0.99 ⌀ | FRQ_U_33056 float64 0.01 0.99 ⌀ | FRQ_A_6973 float64 0.01 0.99 ⌀ | FRQ_U_6210 float64 0.01 0.99 ⌀ | FRQ_A_23031 float64 0.01 0.99 ⌀ | FRQ_U_45626 float64 0.01 0.99 ⌀ | FRQ_A_39967 float64 0.01 0.99 ⌀ | FRQ_U_41159 float64 0.01 0.99 ⌀ | FRQ_A_67323 float64 0.01 0.99 ⌀ | FRQ_U_93456 float64 0.01 0.99 ⌀ | Neff_half float64 31.2k 72.9k ⌀ | FRQ_A_33097 float64 0.01 0.99 ⌀ | FRQ_U_35190 float64 0.01 0.99 ⌀ |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
23 | rs5986659 | 26,771,059 | A | T | 0.695 | 0.691 | 1.96 | 1.0028 | 0.0209 | 0.8916 | 0 | --++-+--+++ | 0 | 10 | 0.5619 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs41305353 | 31,496,431 | T | A | 0.958 | 0.953 | 1.64 | 1.08112 | 0.0511 | 0.1272 | 0 | ----+-+---- | 0 | 10 | 0.88 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs73625784 | 4,340,829 | C | T | 0.648 | 0.644 | 1.98 | 1.0142 | 0.0201 | 0.4826 | 0 | --+--+++-+- | 7.7 | 10 | 0.3703 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs4520321 | 28,092,833 | C | G | 0.131 | 0.122 | 1.94 | 1.0144 | 0.0294 | 0.6263 | 4 | +-+-++-+--- | 15.2 | 10 | 0.2992 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs6630524 | 27,637,923 | C | T | 0.584 | 0.591 | 1.91 | 0.96977 | 0.0198 | 0.1222 | 0 | +---+++-+++ | 0 | 10 | 0.5362 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs5934065 | 13,066,561 | G | A | 0.395 | 0.402 | 1.98 | 1.0022 | 0.0196 | 0.9091 | 0 | -++-+----++ | 45.4 | 10 | 0.04991 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs1024442 | 9,247,996 | T | A | 0.222 | 0.222 | 1.82 | 0.99094 | 0.0241 | 0.7067 | 0 | -+-++++---+ | 16.2 | 10 | 0.29 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs2238884 | 9,888,179 | A | G | 0.885 | 0.89 | 1.83 | 0.9757 | 0.0314 | 0.4325 | 7 | ------+-+-+ | 0 | 10 | 0.8388 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs72619393 | 3,321,780 | A | G | 0.975 | 0.977 | 1.13 | 0.97981 | 0.0918 | 0.8244 | 0 | ?---+--+-++ | 0 | 9 | 0.6772 | 5,896 | 5,510 | 5,275.27 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs1194564 | 3,143,187 | C | T | 0.425 | 0.424 | 1.85 | 0.99352 | 0.02 | 0.7459 | 0 | +-++-++---- | 40.1 | 10 | 0.08107 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs60609761 | 6,315,927 | T | C | 0.894 | 0.902 | 1.87 | 0.98373 | 0.0332 | 0.6213 | 0 | -++-+--+--+ | 0 | 10 | 0.678 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs5916606 | 4,325,163 | G | A | 0.485 | 0.489 | 1.96 | 0.99591 | 0.0192 | 0.829 | 3 | --+-++++-+- | 21.6 | 10 | 0.2376 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs1526863 | 8,406,174 | C | T | 0.316 | 0.315 | 1.99 | 1.0007 | 0.0206 | 0.9744 | 0 | ++++------- | 0 | 10 | 0.6528 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs2074053 | 11,981,123 | T | C | 0.776 | 0.757 | 1.91 | 1.04645 | 0.0232 | 0.05 | 0 | +-+++++--++ | 23.9 | 10 | 0.216 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | X:15647552_A_T | 15,647,552 | A | T | 0.986 | 0.981 | 1.74 | 1.19232 | 0.0904 | 0.05151 | 0 | ??++-++-?++ | 48.7 | 7 | 0.0581 | 5,189 | 4,667 | 4,506.36 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs17249130 | 22,371,759 | C | T | 0.803 | 0.799 | 1.91 | 1.02809 | 0.0243 | 0.2556 | 6 | -+----+++++ | 44.6 | 10 | 0.05417 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs5933790 | 9,906,042 | G | A | 0.833 | 0.829 | 1.38 | 1.04144 | 0.0307 | 0.1851 | 0 | ---+----++- | 0 | 10 | 0.7311 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs73454282 | 16,375,726 | G | A | 0.884 | 0.875 | 1.89 | 1.01339 | 0.0301 | 0.6584 | 0 | -++-+--++-- | 0 | 10 | 0.8726 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs58221680 | 8,254,351 | A | G | 0.493 | 0.497 | 1.98 | 0.98265 | 0.0193 | 0.3655 | 0 | ---+---+-++ | 6.9 | 10 | 0.3779 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs6520491 | 38,402,501 | T | C | 0.724 | 0.723 | 1.99 | 1.0286 | 0.0223 | 0.2055 | 0 | +++--+-+?-+ | 30.7 | 9 | 0.1632 | 6,336 | 5,657 | 5,551.64 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs62587527 | 28,900,700 | C | T | 0.967 | 0.974 | 1.47 | 0.89574 | 0.0686 | 0.1082 | 0 | ?-++++-+-++ | 12 | 9 | 0.3324 | 5,896 | 5,510 | 5,275.27 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs140362218 | 33,725,973 | G | A | 0.97 | 0.971 | 1.29 | 1.03396 | 0.0712 | 0.639 | 0 | ---+-?-?+++ | 0 | 8 | 0.9181 | 5,744 | 5,446 | 5,196.74 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs311177 | 2,713,698 | G | T | 0.464 | 0.467 | 1.57 | 0.97346 | 0.0211 | 0.2022 | 0 | +++++-+-++- | 15.8 | 10 | 0.2932 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs4898317 | 25,247,282 | A | G | 0.418 | 0.424 | 1.86 | 0.98442 | 0.0201 | 0.4345 | 0 | --+--0++++- | 0 | 10 | 0.9862 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs144451367 | 21,398,857 | C | T | 0.982 | 0.983 | 0.142 | 0.82853 | 0.376 | 0.617 | 0 | -?+?-+???+? | 0 | 4 | 0.9711 | 3,444 | 3,327 | 3,238.93 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs1939360 | 34,298,871 | A | G | 0.264 | 0.262 | 1.97 | 1.01725 | 0.0218 | 0.4329 | 0 | +++--+-+++- | 0 | 10 | 0.5082 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs1921928 | 24,692,397 | C | T | 0.33 | 0.334 | 1.87 | 0.99025 | 0.0211 | 0.6423 | 1 | ---+++-+++- | 0 | 10 | 0.7331 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs58874271 | 20,275,531 | C | G | 0.973 | 0.972 | 1.09 | 1.01582 | 0.0775 | 0.8396 | 0 | ++++--+---+ | 0 | 10 | 0.9535 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs6641698 | 3,112,937 | T | C | 0.193 | 0.186 | 1.9 | 1.0023 | 0.0249 | 0.9252 | 0 | +---++++-++ | 0 | 10 | 0.8823 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs139348918 | 13,746,679 | T | C | 0.979 | 0.979 | 1.7 | 1.00884 | 0.0731 | 0.9037 | 0 | -++++++---- | 0 | 10 | 0.711 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs142007078 | 20,628,571 | C | T | 0.908 | 0.905 | 1.42 | 0.99084 | 0.0467 | 0.8444 | 0 | +-+?-?-?++? | 0 | 6 | 0.8311 | 4,532 | 4,038 | 3,896.67 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs67889723 | 34,254,371 | G | A | 0.848 | 0.851 | 1.95 | 0.99084 | 0.0269 | 0.7325 | 0 | -+-++-+-+-+ | 0 | 10 | 0.8604 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs73470270 | 36,794,335 | G | A | 0.974 | 0.976 | 0.684 | 0.85907 | 0.1095 | 0.1653 | 0 | +++++--+++- | 0 | 10 | 0.8691 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs56286010 | 32,460,067 | T | C | 0.974 | 0.977 | 1.37 | 0.88807 | 0.0812 | 0.144 | 0 | +--?---+++- | 24.5 | 9 | 0.2175 | 6,056 | 5,414 | 5,287.09 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs5918516 | 38,122,990 | C | T | 0.982 | 0.983 | 0.845 | 0.96899 | 0.1511 | 0.835 | 0 | +?-+?????+- | 64.3 | 4 | 0.02446 | 3,374 | 3,568 | 3,375.78 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs72612871 | 12,178,082 | A | G | 0.901 | 0.901 | 1.47 | 1.01623 | 0.0375 | 0.6673 | 0 | +-+-+---+++ | 0 | 10 | 0.9388 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs197008 | 28,657,772 | C | A | 0.656 | 0.651 | 1.72 | 1.00723 | 0.0219 | 0.7424 | 0 | -+++--++--- | 4.5 | 10 | 0.3998 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs2710410 | 30,565,477 | G | A | 0.0745 | 0.0659 | 1.24 | 1.07412 | 0.0515 | 0.1652 | 5 | ---+--+---+ | 0 | 10 | 0.8297 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs5985839 | 28,469,075 | A | G | 0.228 | 0.225 | 1.95 | 1.01603 | 0.0232 | 0.4929 | 0 | +++-+++-+-- | 0 | 10 | 0.9319 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs6520833 | 37,739,150 | A | G | 0.961 | 0.961 | 1.77 | 1.04477 | 0.0519 | 0.399 | 6 | +-++++++?-- | 0 | 9 | 0.8692 | 6,336 | 5,657 | 5,551.64 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs5972907 | 33,626,167 | C | A | 0.893 | 0.889 | 1.74 | 1.02644 | 0.0329 | 0.4273 | 0 | +---+---++- | 41.5 | 10 | 0.07213 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs111499143 | 3,111,467 | A | G | 0.985 | 0.986 | 0.665 | 0.897 | 0.1468 | 0.4591 | 0 | +-+?+------ | 7.8 | 9 | 0.3702 | 6,056 | 5,414 | 5,287.09 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs6630231 | 25,956,740 | A | G | 0.912 | 0.907 | 1.81 | 1.00753 | 0.0347 | 0.8296 | 0 | ----+---+++ | 18.1 | 10 | 0.2717 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs5978254 | 8,600,714 | A | T | 0.782 | 0.794 | 1.41 | 0.98364 | 0.028 | 0.5556 | 0 | --++--++-++ | 0 | 10 | 0.6175 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs5935639 | 13,655,501 | C | T | 0.849 | 0.836 | 1.98 | 1.05834 | 0.0265 | 0.03233 | 0 | -+----+--+- | 36.7 | 10 | 0.1057 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs57448134 | 31,249,125 | C | G | 0.932 | 0.938 | 0.961 | 0.948 | 0.0594 | 0.3689 | 0 | +++--+---+- | 22.2 | 10 | 0.2318 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs5943813 | 25,905,644 | C | T | 0.111 | 0.111 | 1.97 | 0.98344 | 0.0307 | 0.587 | 0 | -+++++---++ | 0 | 10 | 0.7893 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs1811477 | 19,519,911 | C | T | 0.959 | 0.96 | 0.783 | 0.9799 | 0.0726 | 0.7798 | 0 | ++++----++- | 0 | 10 | 0.5739 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs6642045 | 2,780,747 | C | T | 0.21 | 0.211 | 1.75 | 0.972 | 0.0252 | 0.2597 | 0 | ++-++-+++-+ | 0 | 10 | 0.5061 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs5935493 | 13,086,329 | A | G | 0.394 | 0.401 | 1.94 | 1.0028 | 0.0198 | 0.8884 | 0 | +--+-++++-- | 44.6 | 10 | 0.05393 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs143072626 | 14,118,009 | G | A | 0.958 | 0.953 | 1.83 | 1.05432 | 0.051 | 0.2993 | 0 | ?----+-+-+- | 11.4 | 9 | 0.338 | 5,896 | 5,510 | 5,275.27 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs12396254 | 3,043,214 | G | A | 0.789 | 0.794 | 1.6 | 0.94999 | 0.0263 | 0.05101 | 0 | -++++++++++ | 0 | 10 | 0.5373 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs1921930 | 13,180,705 | T | A | 0.277 | 0.282 | 1.97 | 1.00692 | 0.0215 | 0.7494 | 2 | -+-----+-++ | 24.8 | 10 | 0.2072 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs5935413 | 12,864,521 | A | G | 0.208 | 0.203 | 1.79 | 0.98629 | 0.0253 | 0.5866 | 8 | -++---+-+-- | 12.7 | 10 | 0.3233 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs75382363 | 4,450,652 | A | G | 0.975 | 0.974 | 0.804 | 1.0835 | 0.095 | 0.3984 | 0 | -++++-++-+- | 1.3 | 10 | 0.4289 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs149427119 | 38,872,129 | C | T | 0.981 | 0.977 | 1.01 | 1.1965 | 0.0915 | 0.05 | 0 | ---+-+---++ | 26.5 | 10 | 0.1918 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs1026906 | 5,510,920 | A | G | 0.442 | 0.455 | 1.92 | 0.97541 | 0.0197 | 0.207 | 0 | ---+---+-++ | 47.5 | 10 | 0.03958 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs138416514 | 32,560,749 | G | A | 0.965 | 0.968 | 0.572 | 0.91888 | 0.1003 | 0.3986 | 0 | ++--+-+++-+ | 0 | 10 | 0.7452 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs4830876 | 13,657,647 | G | A | 0.212 | 0.204 | 1.89 | 1.02337 | 0.0243 | 0.3413 | 0 | +---++---+- | 18.9 | 10 | 0.264 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs757479 | 13,256,985 | T | C | 0.861 | 0.859 | 1.85 | 0.98827 | 0.0286 | 0.6807 | 2 | -+--+++---- | 0 | 10 | 0.8273 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs6527483 | 35,657,706 | T | C | 0.282 | 0.281 | 1.99 | 1.00521 | 0.0212 | 0.8071 | 0 | +++++--+--- | 0 | 10 | 0.8644 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs1833084 | 10,500,374 | C | T | 0.963 | 0.968 | 1.65 | 0.96281 | 0.057 | 0.5057 | 0 | ++-++++--+- | 9.5 | 10 | 0.3541 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs7891653 | 22,325,710 | G | A | 0.97 | 0.967 | 1.45 | 1.00401 | 0.0625 | 0.9495 | 1 | --++-----+- | 0 | 10 | 0.5545 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs6632492 | 36,135,367 | C | T | 0.703 | 0.702 | 1.91 | 1.00501 | 0.0213 | 0.8157 | 0 | ---++-+---+ | 10.8 | 10 | 0.3415 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs140462988 | 37,032,574 | A | C | 0.983 | 0.982 | 1.47 | 1.04749 | 0.0871 | 0.5941 | 0 | +--++++++?- | 0 | 9 | 0.6505 | 6,308 | 5,348 | 5,440.75 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs35830927 | 25,459,774 | G | A | 0.984 | 0.983 | 0.662 | 1.23553 | 0.1828 | 0.2473 | 0 | ?+??---?--+ | 30.4 | 6 | 0.1963 | 3,938 | 3,658 | 3,374.47 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs7052755 | 15,506,966 | G | A | 0.553 | 0.566 | 1.98 | 0.97981 | 0.0193 | 0.2901 | 4 | +-+++-+-+-- | 0 | 10 | 0.4993 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs4615781 | 12,314,204 | G | C | 0.079 | 0.0669 | 1.81 | 1.05548 | 0.0384 | 0.16 | 0 | +---+---++- | 0 | 10 | 0.8024 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs16997817 | 26,379,735 | G | A | 0.868 | 0.884 | 2 | 0.93979 | 0.032 | 0.05225 | 1 | ++-++++?--? | 43.6 | 8 | 0.07696 | 5,714 | 4,948 | 4,892.4 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs6628699 | 32,317,488 | A | C | 0.549 | 0.548 | 1.04 | 0.99124 | 0.0267 | 0.7416 | 0 | ---+---+++- | 0 | 10 | 0.8116 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs2363883 | 37,855,918 | T | C | 0.488 | 0.471 | 1.92 | 1.03149 | 0.0194 | 0.1103 | 5 | ++-+++-++++ | 35.5 | 10 | 0.1146 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs6641647 | 2,704,556 | A | G | 0.497 | 0.482 | 1.54 | 0.98699 | 0.0212 | 0.5374 | 0 | -+--++--+-+ | 0 | 10 | 0.7244 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs149774011 | 29,385,974 | G | A | 0.945 | 0.942 | 1.53 | 1.01898 | 0.0475 | 0.6919 | 0 | +---+-+-++- | 22 | 10 | 0.2341 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs5944219 | 25,949,912 | C | G | 0.911 | 0.906 | 1.82 | 1.00733 | 0.0344 | 0.831 | 0 | ----+---+++ | 17.6 | 10 | 0.2761 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs5944356 | 26,219,340 | T | G | 0.0689 | 0.0706 | 1.98 | 0.95504 | 0.0374 | 0.2189 | 0 | -------+-+- | 25.7 | 10 | 0.1993 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs73185620 | 4,715,407 | A | G | 0.968 | 0.97 | 1.78 | 1.04008 | 0.0653 | 0.5474 | 0 | ?++++---?-+ | 0 | 8 | 0.9821 | 5,602 | 5,149 | 4,951.2 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs5963746 | 39,987,328 | A | G | 0.966 | 0.969 | 0.881 | 0.86745 | 0.0895 | 0.112 | 0 | ----+--++-- | 0 | 10 | 0.929 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs4512548 | 23,220,798 | C | A | 0.562 | 0.546 | 1.96 | 1.0141 | 0.0195 | 0.4716 | 0 | -+-+---+--+ | 0 | 10 | 0.5699 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs116437438 | 25,903,842 | C | T | 0.904 | 0.898 | 1.92 | 1.01349 | 0.0329 | 0.6846 | 0 | +-++-+++--- | 24.8 | 10 | 0.2077 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs12847086 | 33,243,198 | C | T | 0.525 | 0.523 | 1.62 | 0.99611 | 0.0212 | 0.8532 | 5 | +-+-+-+++-- | 0 | 10 | 0.6524 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs7883758 | 4,124,447 | G | T | 0.712 | 0.708 | 1.98 | 1.01258 | 0.0212 | 0.5543 | 0 | ---++-+---+ | 0 | 10 | 0.9417 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs798168 | 15,863,296 | T | C | 0.367 | 0.362 | 1.99 | 1.003 | 0.0198 | 0.8796 | 0 | +--+--+-+-+ | 43.5 | 10 | 0.06044 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs59212616 | 39,359,014 | T | C | 0.752 | 0.763 | 1.55 | 0.95485 | 0.0253 | 0.06822 | 0 | +------+--+ | 42.9 | 10 | 0.06394 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs6641911 | 3,689,686 | G | C | 0.373 | 0.368 | 1.46 | 1.0014 | 0.0232 | 0.9515 | 0 | -++-++--+-- | 54 | 10 | 0.01661 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs2093031 | 37,860,450 | C | T | 0.291 | 0.285 | 1.98 | 1.02122 | 0.0223 | 0.3465 | 1 | --+?--+---+ | 30.9 | 9 | 0.1615 | 6,056 | 5,414 | 5,287.09 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs5963639 | 39,205,291 | C | T | 0.747 | 0.739 | 2 | 1.01086 | 0.022 | 0.6233 | 0 | --++-++---- | 26.7 | 10 | 0.1896 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs72623732 | 26,872,070 | A | G | 0.58 | 0.585 | 1.96 | 0.98551 | 0.0196 | 0.4571 | 0 | --+---++-++ | 20.1 | 10 | 0.2525 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs200538790 | 34,436,269 | C | A | 0.684 | 0.687 | 1.19 | 0.98926 | 0.0268 | 0.6878 | 0 | -++++-+---+ | 39.2 | 10 | 0.08734 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs7889194 | 5,394,505 | A | C | 0.474 | 0.483 | 1.97 | 0.99124 | 0.0193 | 0.647 | 0 | +-+--++-+-- | 0 | 10 | 0.81 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs6653775 | 27,681,895 | A | G | 0.956 | 0.959 | 1.72 | 1.00662 | 0.0519 | 0.8989 | 0 | --++++---+- | 26.7 | 10 | 0.19 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs5928556 | 34,447,654 | G | A | 0.961 | 0.964 | 1.7 | 1.02655 | 0.0538 | 0.626 | 7 | -+------+++ | 20.1 | 10 | 0.2521 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs4830418 | 9,817,747 | A | T | 0.107 | 0.106 | 1.87 | 0.999 | 0.0325 | 0.9747 | 3 | +-+-+-+--+- | 27.1 | 10 | 0.1863 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs5961464 | 4,087,941 | T | A | 0.711 | 0.706 | 1.98 | 1.01521 | 0.0212 | 0.4738 | 4 | ---++-+---+ | 0 | 10 | 0.9042 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs5926396 | 27,304,838 | T | G | 0.473 | 0.48 | 1.98 | 0.99015 | 0.0192 | 0.6066 | 0 | +---+++--+- | 35.1 | 10 | 0.118 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs2124745 | 32,286,217 | C | A | 0.454 | 0.453 | 1.88 | 0.99203 | 0.0198 | 0.6845 | 2 | --++++-+-+- | 9 | 10 | 0.3586 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs5926309 | 23,425,338 | T | C | 0.275 | 0.266 | 1.82 | 1.01116 | 0.0226 | 0.6224 | 3 | +--+++-+--- | 12.1 | 10 | 0.3287 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs62581991 | 3,441,920 | T | C | 0.187 | 0.191 | 1.91 | 0.97511 | 0.025 | 0.3126 | 0 | --+---+---- | 0 | 10 | 0.5623 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs5972955 | 33,768,278 | A | G | 0.345 | 0.355 | 1.92 | 1.0022 | 0.0204 | 0.9143 | 0 | --+-+++---+ | 0 | 10 | 0.7017 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs1438491 | 12,572,988 | T | A | 0.477 | 0.459 | 1.95 | 1.0245 | 0.0193 | 0.2099 | 0 | ---+-++-++- | 0 | 10 | 0.6995 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
23 | rs5971129 | 23,443,734 | T | C | 0.539 | 0.537 | 1.9 | 0.99641 | 0.0196 | 0.8541 | 0 | +-+++++---- | 37 | 10 | 0.103 | 6,630 | 6,018 | 5,875.71 | null | null | null | null | null | null | null | null | null | null | null | null | null |
End of preview. Expand in Data Studio
Schizophrenia GWAS Summary Statistics (PGC)
Mirror of Psychiatric Genomics Consortium (PGC) summary statistics for Schizophrenia (scz2022), redistributed in a single Apache Parquet file for use with OpenMed Genomics.
Source
- Primary citation: Trubetskoy et al., Nature 2022
- Original distributor: Psychiatric Genomics Consortium (https://pgc.unc.edu/for-researchers/download-results/)
This mirror exists only because the upstream OpenMed mirror became inaccessible. No modifications have been made to the underlying data; per-shard parquet files were concatenated into a single file for convenient streaming.
File
pgc-schizophrenia_scz2022.parquet -- one Apache Parquet file containing the full summary
statistics table in the PGC's published schema (SNP, CHR, BP, A1, A2,
FRQ, OR/BETA, SE, P, ...).
Usage
import polars as pl
df = pl.read_parquet(
"https://huggingface.co/datasets/turmex2/pgc-schizophrenia/resolve/main/pgc-schizophrenia_scz2022.parquet"
)
License & terms of use
PGC summary statistics are released for non-commercial research use only. Do not attempt to re-identify individuals. Results derived from these data are not a clinical diagnosis. See the original publication for the full data-use agreement.
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