Datasets:

turmex2
/

pgc-bipolar

CHR int64 1 22	SNP large_stringlengths 3 21	BP int64 80 249M	A1 large_stringclasses 880 values	A2 large_stringlengths 1 7	FRQ_A_20352 float64 0 1	FRQ_U_31358 float64 0 1	INFO float64 0.1 2	OR float64 0 5,159,375,454,847,705,000,000,000,000,000,000,000,000B	SE float64 0.01 2.56k	P float64 0 1	ngt int64 0 32	Direction large_stringlengths 3 32	HetISqt float64 0 93.1	HetDf int64 0 31	HetPVa float64 0 1	Nca int64 130 20.4k	Nco int64 130 31.4k	Neff float64 130 23.3k
10	rs185339560	2,392,426	T	C	0.00935	0.0081	0.67	1.16813	0.0923	0.09239	0	+--+++++--+?++--+-+-?++++++++--+	0	29	0.6096	19,294	29,909	22,093.09
10	rs80145673	2,855,051	A	G	0.0049	0.0051	0.948	0.9658	0.8946	0.969	0	????????-???????????????????????	0	0	1	253	291	270.67
10	rs11250701	1,689,546	A	G	0.661	0.657	0.955	1.00743	0.0144	0.607	0	--++----++++-++---++-++++-+-+++-	0	31	0.6075	20,352	31,358	23,291.08
10	chr10_2622752_D	2,622,752	I2	D	0.97	0.97	0.932	0.99203	0.0405	0.8445	0	--++-+++-++-++-++---+--+-+---+--	0	31	0.8494	20,352	31,358	23,291.08
10	rs7085086	151,476	A	G	0.313	0.311	0.954	0.9996	0.0147	0.9787	0	--++++-++--+-+--++-------++-+-++	0	31	0.9878	20,352	31,358	23,291.08
10	rs113494187	1,593,759	T	G	0.985	0.985	0.862	0.98442	0.0598	0.7924	0	---+++--+++-++-++----+----++---+	1.5	31	0.443	20,352	31,358	23,291.08
10	rs117915320	1,708,106	A	C	0.0146	0.0145	0.668	1.0821	0.0686	0.2502	0	++++---+?-+--+-+-++++++--++-+--+	0	30	0.8743	20,099	31,067	23,020.41
10	rs182753344	790,310	T	C	0.0907	0.0886	0.607	1.07122	0.03	0.02187	0	+-++++--+-+++++----++-+++++++++-	19.2	31	0.1698	20,352	31,358	23,291.08
10	rs188913771	1,273,049	A	G	0.0108	0.0102	0.669	1.04196	0.0803	0.6087	0	+-+-------++-++-++--?-----++-+++	0	30	0.5091	19,784	30,789	22,722.58
10	rs7911665	2,067,236	T	G	0.681	0.687	0.907	0.97687	0.015	0.119	0	-++----+---++-----++-++---+----+	0	31	0.9676	20,352	31,358	23,291.08
10	chr10_587412_I	587,412	D	I3	0.992	0.997	0.674	2.58313	1.156	0.4117	0	????+???????????????????????????	0	0	1	489	527	506.67
10	chr10_1734885_D	1,734,885	I2	D	0.987	0.988	0.707	0.90213	0.0729	0.1575	0	+-++------+-+++-+++-?++++--+-+++	19.5	30	0.1692	19,784	30,789	22,722.58
10	chr10_1359949_I	1,359,949	I2	D	0.00617	0.00597	0.362	1.07283	0.2209	0.7504	0	-+?--?-?+?-?+???-??-??+???+++?-?	0	14	0.5673	9,589	12,603	10,488.5
10	rs59259273	1,572,663	T	G	0.991	0.997	0.916	0.3862	0.9793	0.3313	0	????????-???????????????????????	0	0	1	253	291	270.67
10	rs3750679	1,228,623	T	C	0.686	0.683	0.998	1.00411	0.0143	0.7725	1	+-+-0++-++--+-++-+---+-++-++++--	0	31	0.8709	20,352	31,358	23,291.08
10	rs12250711	1,377,512	A	G	0.424	0.424	0.987	0.9985	0.0136	0.9118	0	-+-+---+-+++----+-++-+-++-+++++-	0	31	0.7721	20,352	31,358	23,291.08
10	rs116965625	2,185,655	A	G	0.00677	0.00634	0.644	1.07069	0.1388	0.6229	0	??-+??++++--+?+??+?-+??--??-??+?	0	16	0.5762	10,959	18,679	12,763.74
10	rs1079389	1,161,980	A	G	0.928	0.931	0.997	0.9659	0.026	0.1825	0	+-++-+-++-----+-----++---+---+-+	0	31	0.5784	20,352	31,358	23,291.08
10	rs6601756	2,634,804	T	C	0.802	0.805	1	0.9985	0.0168	0.9298	1	-+---++--+++-+-+++---++---+++-++	6.8	31	0.3583	20,352	31,358	23,291.08
10	rs11250874	1,922,514	A	C	0.151	0.152	1	1.0005	0.0186	0.9786	0	++-+-+-+---++-++-+-+-++-+--++--+	20.8	31	0.1501	20,352	31,358	23,291.08
10	rs904962	1,372,501	T	C	0.937	0.937	0.979	1.01086	0.0278	0.6967	29	+-+-++--+----++--++++-+++-++---+	18.3	31	0.1822	20,352	31,358	23,291.08
10	rs145011840	166,823	A	C	0.993	0.992	0.326	1.16579	0.2311	0.5069	0	?-?-+-++??-???+?-???+???????+-??	1.1	11	0.4332	8,220	10,194	8,780.75
10	rs77067486	660,261	C	G	0.992	0.994	0.879	0.64217	0.6035	0.463	0	????-???-???????????????????????	0	1	0.4386	489	527	506.67
10	rs78819828	2,189,207	A	G	0.0133	0.013	0.535	1.05369	0.0799	0.5126	0	+-+---+---++-+-++++++++---++-+-+	0	31	0.9354	20,352	31,358	23,291.08
10	rs2133474	1,750,188	C	G	0.676	0.672	0.958	1.02963	0.0145	0.04491	0	-++++--++++-++--++---+-++-++++++	0	31	0.6715	20,352	31,358	23,291.08
10	rs76433356	708,976	A	C	0.00785	0.00501	0.89	1.73014	0.6247	0.3802	0	????-???+???????????????????????	10.2	1	0.2914	489	527	506.67
10	rs10903843	2,722,162	A	G	0.79	0.793	0.982	0.9971	0.0166	0.8612	3	++-+++--+-+---+++-++++-++--+-+--	0	31	0.9477	20,352	31,358	23,291.08
10	chr10_2016068_I	2,016,068	I2	D	0.0472	0.0488	0.975	0.98521	0.0316	0.6374	0	-+-+++-+--++---++-+-+-++-++-+-++	2.7	31	0.4238	20,352	31,358	23,291.08
10	rs140241602	775,003	C	G	0.962	0.961	0.8	0.97385	0.0388	0.4948	0	++----++-+++--+-+-++-++-++------	0	31	0.9965	20,352	31,358	23,291.08
10	rs12261505	331,054	T	C	0.868	0.866	0.974	1.02542	0.0199	0.2074	5	+++-++++---++-++-+++-+---+-+++++	0	31	0.5659	20,352	31,358	23,291.08
10	rs34032124	1,573,154	T	C	0.347	0.349	0.996	0.9801	0.014	0.1525	0	-+-+------+--+-+--+++--+-+-+-++-	16.2	31	0.2116	20,352	31,358	23,291.08
10	rs11595152	1,316,525	T	G	0.988	0.988	0.629	0.98541	0.0781	0.8503	0	--+-+++-+--+-++---?---?---++++++	8.8	29	0.3291	19,938	30,681	22,814.28
10	rs12358966	758,703	A	G	0.823	0.821	0.976	1.04008	0.0177	0.02594	0	+-++++--++-+++-+-+++--+++--++--+	8.9	31	0.3244	20,352	31,358	23,291.08
10	rs150327785	478,253	C	G	0.991	0.991	0.947	1.06705	0.0761	0.3937	0	-+++-+---+++?+--+---?-?+++-+++?+	3.3	27	0.4156	18,655	29,466	21,534.77
10	rs186082564	699,895	A	T	0.00695	0.00665	0.636	1.17504	0.1418	0.2554	0	-+?+??+++?+?-?++?????-?+--?????+	24.3	14	0.1854	10,712	15,575	12,250.41
10	rs7897169	1,655,887	A	G	0.718	0.718	0.963	0.9991	0.0151	0.955	1	---++----+-+--++-+-++-+--+++++++	0	31	0.9672	20,352	31,358	23,291.08
10	rs10903735	2,332,465	T	C	0.465	0.462	0.991	1.00501	0.0134	0.7111	14	-++---+++-+--++--+++--+++-+-+--+	0	31	0.7213	20,352	31,358	23,291.08
10	rs182351179	2,380,571	T	C	0.993	0.993	0.745	1.04498	1.232	0.9715	0	?????????????????????????+??????	0	0	1	130	130	130
10	rs117076595	295,980	T	C	0.982	0.982	0.787	0.94819	0.0564	0.3456	0	--+++++----+-+--++--+--+-+++--+-	0	31	0.8955	20,352	31,358	23,291.08
10	rs10903369	1,153,731	T	C	0.913	0.918	0.976	0.95609	0.0242	0.06344	0	----++---+---+--++------+-++---+	0	31	0.826	20,352	31,358	23,291.08
10	rs36051896	1,155,747	T	C	0.822	0.818	0.994	1.01177	0.0174	0.5031	0	++-+--+-+++--+---++++-+-+-+-+++-	0	31	0.4844	20,352	31,358	23,291.08
10	rs61831976	1,726,707	T	C	0.0416	0.0414	0.934	0.99144	0.0347	0.8044	0	--+-++++-++----+++---++---+-+--+	0	31	0.5442	20,352	31,358	23,291.08
10	rs4500395	2,994,468	A	C	0.323	0.325	0.789	0.97961	0.016	0.1976	0	-+------------+++----+---+-+-+--	0	31	0.6949	20,352	31,358	23,291.08
10	rs150159791	2,105,605	A	G	0.989	0.992	0.387	0.93913	0.5021	0.9004	0	????????+??????????-????????????	0	1	0.3347	704	1,921	977.19
10	rs2813371	1,608,159	T	C	0.0012	0	0.999	35,001,448.34909	2,048	0.9932	1	???????????????+????????????????	0	0	1	410	485	444.36
10	rs73594579	2,185,314	T	C	0.0038	0.0074	0.562	0.38049	1.331	0.4678	0	??????????????????????-?????????	0	0	1	233	198	214.08
10	rs140912326	194,461	T	C	0.00738	0.00778	0.855	0.921	0.1043	0.43	0	-?-?-???+-?-?-?---++?+---+-+++++	3.8	22	0.4092	13,853	22,533	16,059.72
10	rs17156051	1,225,974	A	G	0.996	0.993	0.967	1.58123	0.9004	0.6108	0	????????+???????????????????????	0	0	1	253	291	270.67
10	rs146176236	761,980	T	C	0.00756	0.00798	0.525	0.86866	0.1209	0.2441	0	+--+-+----+???++-?--+??+--??--?-	0	22	0.9121	15,967	24,236	18,237.95
10	rs117207189	302,131	T	C	0.00633	0.00634	0.957	0.97609	0.2236	0.9137	0	-+-?+????????-?????????-????????	0	5	0.7459	3,095	4,581	3,482.94
10	rs12573533	1,860,541	A	C	0.00869	0.00646	0.616	1.82741	0.3469	0.08227	0	????????????+??????++???????????	0	2	0.8578	1,429	2,888	1,789.1
10	chr10_1761951_D	1,761,951	I2	D	0.993	0.994	0.542	0.82828	0.1569	0.2298	0	---++++?-?+???++-??+??+-???++?+?	15.3	17	0.2709	11,378	15,503	12,425.36
10	rs11252925	566,291	A	G	0.00682	0.00761	0.459	0.83853	0.1641	0.2834	4	-+++---+?+??-?-+??????+?????--?-	29.1	15	0.1319	11,858	18,464	13,896.33
10	rs181491095	95,032	T	C	0.011	0.00963	0.384	1.75804	0.3508	0.1078	0	+?????????????+?????????????????	0	1	0.332	1,612	3,363	2,148.46
10	rs11815408	2,392,521	A	C	0.175	0.177	1	0.98314	0.0174	0.3295	0	-+++-+--+-+-+--+-+--+------+-+--	0	31	0.9936	20,352	31,358	23,291.08
10	rs78876748	1,310,428	A	T	0.035	0.0344	0.654	0.99561	0.0453	0.9233	0	-+--++---+-+---+++--+++++-++++--	19.7	31	0.1639	20,352	31,358	23,291.08
10	rs2452209	2,527,236	A	C	0.149	0.148	0.986	1.01116	0.0188	0.5572	5	+-+-++-++-++-+-+-++++-+++++--+--	0	31	0.9566	20,352	31,358	23,291.08
10	rs55698512	2,204,594	T	G	0.945	0.948	0.987	0.99025	0.0298	0.7417	0	-++-+----+-++------++++++-++--++	0	31	0.8937	20,352	31,358	23,291.08
10	rs183517709	517,849	T	C	0.0068	0.00666	0.27	1.18341	0.2058	0.4132	0	-++??-?+??+-+?+?-+--?-??-++-+--?	29	20	0.1053	12,690	18,902	14,221.06
10	rs9423501	2,574,369	T	C	0.0227	0.0228	0.965	0.97229	0.0457	0.5383	0	+--+-++++----+---+---+-+-+--++-+	0	31	0.8135	20,352	31,358	23,291.08
10	rs34128661	1,690,550	A	C	0.552	0.547	0.99	1.00944	0.0134	0.4865	0	--++--+-+++++++-+-++-++++-+-+++-	0	31	0.7964	20,352	31,358	23,291.08
10	rs10903734	2,332,455	A	T	0.535	0.538	0.991	0.99501	0.0134	0.7099	0	+--+++---+-++--++---++---+-+-++-	0	31	0.7205	20,352	31,358	23,291.08
10	rs58381255	1,451,594	A	G	0.194	0.196	0.951	0.98629	0.0173	0.4258	0	-++++--+-+-++------++--+++-----+	0	31	0.7313	20,352	31,358	23,291.08
10	rs4881525	818,372	C	G	0.298	0.291	0.909	1.02706	0.0153	0.08178	0	++++++----+--+++++++---+-+-+-+-+	6.7	31	0.3596	20,352	31,358	23,291.08
10	rs118001639	1,198,570	T	G	0.00697	0.00727	0.583	0.83377	0.1215	0.1344	0	+++?+---+--?-?--??+-?+--+-??-+?-	0	22	0.6821	15,530	24,025	17,881.13
10	rs10903461	1,508,732	A	G	0.361	0.363	0.867	0.98679	0.015	0.3749	0	++++-++-++---+---+-+-+-++-------	12	31	0.2754	20,352	31,358	23,291.08
10	rs117861466	2,057,571	A	G	0.0124	0.0107	0.801	1.19041	0.1072	0.104	0	?+?--?-+?+-?+?+?+???+?+?????-???	0	12	0.7869	9,420	14,045	10,699.37
10	rs78872683	2,282,649	T	C	0.007	0.007	0.993	0.98393	0.5074	0.9745	0	????????????????????-???????????	0	0	1	568	569	568.5
10	rs11250671	1,665,047	A	G	0.014	0.0122	0.981	1.12953	0.0598	0.04169	0	+--++++-+---+-+---+++-++++++++-+	4.9	31	0.3885	20,352	31,358	23,291.08
10	chr10_1933343_D	1,933,343	D	I4	0.145	0.144	0.834	1.02932	0.0207	0.1639	0	++-+-+-----+-+-+--++-+-++--++--+	0	31	0.8387	20,352	31,358	23,291.08
10	rs2458693	2,555,419	A	G	0.00814	0.00545	0.868	1.37534	0.2756	0.2476	0	????????+??????????+????????+???	0	2	0.7347	2,001	3,077	2,199.64
10	rs34537587	1,459,417	C	G	0.991	0.992	0.458	0.7931	0.2075	0.264	0	----??-+????+?-????????-????????	0	8	0.7952	5,150	8,436	6,099.4
10	rs145750704	935,801	C	G	0.00546	0.00637	0.415	0.69593	0.4159	0.3833	0	???-??+?????+??????-??-?????????	30.6	4	0.2175	2,455	4,011	2,859
10	rs6560779	1,891,174	A	G	0.359	0.36	0.968	1.01857	0.0142	0.1957	14	+-++-++--++-+++-++++++---++----+	0	31	0.7177	20,352	31,358	23,291.08
10	rs79194465	2,696,657	T	C	0.994	0.995	0.566	0.56808	0.4941	0.2524	0	???-???????-?????????????????-??	0	2	0.9819	1,080	1,668	1,293.47
10	rs7082072	2,099,414	A	G	0.691	0.688	0.952	0.99045	0.0147	0.5134	0	+-+++-+++---+--+----+++---+-++--	0	31	0.7673	20,352	31,358	23,291.08
10	rs187845524	2,670,272	A	C	0.986	0.985	0.613	1.10164	0.0721	0.1795	0	-+-++-+++++-+--+++-+++-----++++-	0	31	0.7264	20,352	31,358	23,291.08
10	rs78860260	2,963,129	T	C	0.0134	0.0135	0.983	1.02204	0.0599	0.7163	0	++++?+--?+-+?+--++++++-?-+++----	3.9	27	0.4057	19,453	30,142	22,270.32
10	chr10_613115_I	613,115	I2	D	0.0067	0.0037	0.662	2.26528	1.135	0.4713	0	????????-???????????????????????	0	0	1	253	291	270.67
10	rs10794873	2,223,565	A	G	0.674	0.664	0.993	1.03324	0.0143	0.02189	0	+++++-++++++--++-+++---++---+-++	0	31	0.7055	20,352	31,358	23,291.08
10	rs76278128	2,877,782	T	C	0.0109	0.00947	0.937	1.1466	0.0692	0.04805	0	----++-+-+++-++++-++-+--+++-+-++	0	31	0.7875	20,352	31,358	23,291.08
10	rs61834763	2,880,202	T	C	0.0609	0.0612	0.861	1.00894	0.0301	0.7663	0	+-+-++-+---+-+++--+-+-+++--++-+-	0	31	0.9582	20,352	31,358	23,291.08
10	rs192792384	2,959,546	C	G	0.989	0.99	0.712	0.93165	0.078	0.364	0	---++--+?+---++++--+++++-++-+--+	0	30	0.6475	20,099	31,067	23,020.41
10	rs140932595	872,957	A	G	0.992	0.994	0.747	0.72899	0.6213	0.6109	0	????????????-???????????????????	0	0	1	410	689	514.09
10	rs12773579	2,219,607	A	G	0.325	0.318	0.979	1.03035	0.0144	0.0384	0	-+-++++-++++-+++--+----++-+++--+	0	31	0.5107	20,352	31,358	23,291.08
10	rs12570635	2,837,326	A	G	0.318	0.319	0.918	1.0012	0.0149	0.9352	0	+--++++-+-+++-++---+-+----+-+--+	36.5	31	0.02184	20,352	31,358	23,291.08
10	rs72772839	375,160	T	C	0.00576	0.00621	0.855	0.9519	0.1398	0.7242	0	?-???-??-?-+???-?-?????++??++-?-	2.8	12	0.4179	10,273	15,018	11,527.22
10	rs117931295	2,812,820	A	G	0.00806	0.00371	0.994	2.12634	0.4979	0.1297	0	????+???????????????+???????????	0	1	0.7982	804	805	804.5
10	rs12268077	1,629,734	T	C	0.991	0.993	0.693	0.91211	0.1897	0.6279	0	?-????++????-?-?+???+????????-??	0	7	0.5496	4,294	6,671	5,026.83
10	rs190045278	2,080,064	A	C	0.987	0.988	0.932	0.88639	0.0631	0.05584	0	+--+++-+-+-++---?--+-+---++-+-+-	0	30	0.5848	19,903	30,985	22,883.59
10	rs185333449	2,938,244	T	C	0.00687	0.00699	0.555	0.94743	0.1144	0.6369	0	+--?-?++-++--+-+?--+-?--+?+--?-+	1.9	25	0.4359	18,079	29,035	21,023.05
10	rs185714752	2,218,161	T	C	0.991	0.991	0.923	0.92386	0.0746	0.2882	0	-----+--+--+++-+++----++-++-+?--	3.2	30	0.4166	20,203	31,065	23,093.54
10	rs11253486	920,441	A	G	0.875	0.877	0.939	0.97064	0.0209	0.1529	6	++++--++++++-+-+-++-----+++---+-	11.9	31	0.2758	20,352	31,358	23,291.08
10	rs35957139	884,889	T	C	0.161	0.162	1	1.00743	0.0181	0.684	0	++++--++---+-+++-----++++++---++	0	31	0.8296	20,352	31,358	23,291.08
10	rs2638454	2,434,628	T	C	0.0619	0.0628	0.7	0.98639	0.033	0.6772	0	-++---++--+------+--+-+-+--+-+++	12.9	31	0.2617	20,352	31,358	23,291.08
10	rs141778115	686,763	T	G	0.00847	0.00865	0.326	0.81156	0.1299	0.1081	0	-+--++--+--+++---+?+-+--+++-----	0	30	0.4757	20,171	30,879	23,028.35
10	rs139821330	779,682	A	T	0.992	0.991	0.618	1.17351	0.1194	0.1803	0	-+?-??--+?+++?-??+?+??????++??++	0	15	0.8918	11,881	19,968	14,268.92
10	chr10_2379207_I	2,379,207	I2	D	0.339	0.343	0.784	1.0026	0.0159	0.8682	0	++---+-+-+--+--+---++++-+---+---	15.3	31	0.2251	20,352	31,358	23,291.08
10	rs72774941	2,850,958	T	C	0.0306	0.0294	0.756	1.03407	0.0451	0.4567	0	-++----+--+--++-++----++-+-+-+-+	18.3	31	0.182	20,352	31,358	23,291.08
10	rs7899347	2,882,816	T	G	0.665	0.665	0.967	1.00572	0.0144	0.6926	24	-+--+++--++-+-+-++++-+---0+-+--+	31.9	31	0.04485	20,352	31,358	23,291.08

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Bipolar Disorder GWAS Summary Statistics (PGC)

Mirror of Psychiatric Genomics Consortium (PGC) summary statistics for Bipolar Disorder (bip2019), redistributed in a single Apache Parquet file for use with OpenMed Genomics.

Source

Primary citation: Stahl et al., Nature Genetics 2019; Mullins et al., Nature Genetics 2021
Original distributor: Psychiatric Genomics Consortium (https://pgc.unc.edu/for-researchers/download-results/)

This mirror exists only because the upstream OpenMed mirror became inaccessible. No modifications have been made to the underlying data; per-shard parquet files were concatenated into a single file for convenient streaming.

File

pgc-bipolar_bip2019.parquet -- one Apache Parquet file containing the full summary statistics table in the PGC's published schema (SNP, CHR, BP, A1, A2, FRQ, OR/BETA, SE, P, ...).

Usage

import polars as pl
df = pl.read_parquet(
    "https://huggingface.co/datasets/turmex2/pgc-bipolar/resolve/main/pgc-bipolar_bip2019.parquet"
)

License & terms of use

PGC summary statistics are released for non-commercial research use only. Do not attempt to re-identify individuals. Results derived from these data are not a clinical diagnosis. See the original publication for the full data-use agreement.

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Bipolar Disorder GWAS Summary Statistics (PGC)

Source

File

Usage

License & terms of use

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