Datasets:

turmex2
/

pgc-autism

CHR int64 1 22	SNP large_stringlengths 3 23	BP int64 828 249M	A1 large_stringlengths 1 17	A2 large_stringlengths 1 17	INFO float64 0.7 1.15	OR float64 0.66 1.42	SE float64 0.01 0.1	P float64 0 1
8	rs62513865	101,592,213	T	C	0.949	1.00652	0.027	0.8086
8	rs79643588	106,973,048	A	G	0.997	1.01786	0.024	0.4606
8	rs17396518	108,690,829	T	G	0.987	0.96127	0.014	0.004647
8	rs983166	108,681,675	A	C	0.998	0.9799	0.0139	0.1452
8	rs28842593	103,044,620	T	C	0.857	0.99591	0.0203	0.8415
8	rs35107696	109,712,249	A	AT	0.999	1.01308	0.0165	0.4302
8	rs377046245	105,176,418	T	TTC	1	1.00854	0.0157	0.5867
8	rs7014597	104,152,280	C	G	0.993	1.01928	0.0182	0.293
8	rs3134156	100,479,917	T	C	0.998	0.98246	0.019	0.3526
8	rs6980591	103,144,592	A	C	0.997	1.04498	0.0167	0.008388
8	rs72670434	108,166,508	A	T	0.985	1.01268	0.0147	0.3898
8	rs10955343	105,201,080	T	C	1	0.99362	0.0144	0.6587
8	rs74749112	109,964,318	A	G	0.993	1.00632	0.0389	0.8709
8	rs4734443	101,012,421	T	C	0.982	1.01035	0.0141	0.4655
8	rs2436965	103,650,415	A	G	0.982	1.04477	0.0203	0.03115
8	rs427145	109,224,500	A	G	0.994	0.97668	0.0162	0.1458
8	rs7838119	101,644,243	A	G	0.994	1.04091	0.0223	0.07297
8	rs4448250	107,978,035	T	C	0.999	1.0023	0.016	0.8874
8	rs2441902	105,208,527	A	G	0.997	1.0028	0.0147	0.8465
8	rs34397009	106,490,696	C	G	0.971	1.00511	0.021	0.8098
8	rs11986967	101,360,616	T	C	0.989	0.98827	0.0193	0.5389
8	rs118006969	105,707,805	A	G	0.881	1.0199	0.0412	0.6334
8	rs3036673	102,226,177	A	ACT	1	0.99233	0.0145	0.5976
8	rs9297348	105,710,019	T	C	1	1.01562	0.0161	0.3358
8	rs16873161	106,501,425	T	C	0.901	1.003	0.0357	0.9339
8	chr8:104565387	104,565,387	T	C	0.964	0.99293	0.0192	0.7106
8	rs56999386	104,678,848	T	C	0.998	0.99074	0.0184	0.6127
8	rs402658	109,107,822	A	G	0.991	0.99283	0.0157	0.6447
8	rs7008054	109,954,636	T	C	0.989	1.00904	0.0262	0.7315
8	rs2154636	101,492,039	T	C	0.947	1.0014	0.0142	0.9209
8	rs117371716	106,807,475	T	C	0.851	0.9605	0.0364	0.269
8	rs7010742	109,020,139	A	C	0.942	0.99422	0.0341	0.8649
8	rs9297415	109,572,560	T	C	0.993	1.02788	0.0144	0.05569
8	rs1786334	101,752,155	T	C	0.969	0.99253	0.0152	0.6209
8	rs7002798	103,537,632	A	G	0.978	0.98069	0.015	0.192
8	rs6994682	101,421,798	T	C	0.854	1.01643	0.0246	0.5079
8	rs28678866	108,828,542	A	T	0.828	1.0612	0.0561	0.2895
8	rs77485341	104,089,846	T	C	0.765	0.93951	0.0641	0.3297
8	rs78250514	104,817,525	A	C	0.913	0.95209	0.0434	0.2583
8	rs7845707	105,999,557	A	G	0.98	0.94205	0.038	0.1164
8	rs118104610	100,575,153	T	C	0.812	0.96841	0.043	0.4555
8	rs200191813	109,179,993	A	G	1.01	0.99203	0.0138	0.5637
8	rs10086906	108,788,369	T	C	0.844	0.98364	0.0295	0.5766
8	rs66466526m	108,744,931	A	ATTT	0.865	0.99124	0.03	0.7683
8	rs191655469	109,776,785	T	C	0.985	0.95132	0.0799	0.5325
8	rs11989351	108,391,555	T	C	0.983	0.98669	0.0174	0.4408
8	rs4735065	109,467,444	T	C	0.996	1.02655	0.0143	0.06686
8	rs117982413	106,064,672	T	C	0.859	0.98501	0.0394	0.7005
8	rs16868691	102,919,547	A	G	0.977	1.11639	0.0532	0.03868
8	rs827591	104,364,497	T	C	0.979	0.9973	0.0246	0.912
8	rs75654101	100,712,959	A	G	0.996	0.94563	0.0348	0.1079
8	rs73307751	108,172,407	A	G	0.971	1.01664	0.0148	0.2631
8	rs117993188	105,357,938	A	T	0.784	0.93651	0.0709	0.3544
8	rs1842446	109,603,416	T	C	0.904	1.0027	0.0155	0.8605
8	rs140173159	108,881,569	A	AGTTT	0.99	1.01613	0.023	0.4867
8	rs3116089	101,057,587	A	C	0.995	1.02255	0.019	0.2403
8	rs5893892	108,962,720	G	GT	0.766	0.99432	0.016	0.7198
8	rs2929061	106,386,493	T	C	1.01	0.99531	0.0138	0.7351
8	rs28481410	108,999,791	T	G	0.981	1.01745	0.0527	0.7428
8	rs35832654	106,256,041	T	G	0.987	1.01562	0.0154	0.3151
8	rs35465599	104,669,542	T	C	0.905	1.02296	0.0417	0.5858
8	rs4036839	106,801,559	T	C	0.977	0.97171	0.0202	0.1545
8	rs28368512	109,984,526	T	C	0.969	1.00955	0.0387	0.8066
8	rs523474	103,090,417	T	C	0.927	1.02102	0.0176	0.2369
8	rs714460	108,197,156	A	T	0.998	0.98639	0.0142	0.3326
8	rs676498	103,934,365	T	C	0.98	1.00904	0.0139	0.5199
8	rs142138681	105,402,508	C	CTTAGA	0.989	1.0321	0.0172	0.06659
8	rs143343375	102,605,704	T	TA	0.967	1.00844	0.0388	0.8284
8	rs6991912	105,866,733	A	C	0.997	1.03004	0.0201	0.1405
8	rs146086983	100,959,323	A	T	0.883	0.98089	0.0392	0.6235
8	rs16868711	102,921,933	T	C	0.976	0.89458	0.0533	0.03652
8	rs34821554	106,129,110	A	AGT	0.849	1.02429	0.022	0.2744
8	rs2304501	104,443,283	A	G	1	1.02388	0.0166	0.1539
8	rs1025856	106,733,869	A	G	0.989	1.02276	0.0142	0.1136
8	rs17282225	106,310,486	C	G	0.805	0.99094	0.0566	0.8724
8	rs1480561	109,587,774	A	G	0.978	0.97356	0.0145	0.0638
8	rs28587716	101,654,179	T	C	0.815	0.99412	0.0153	0.6988
8	chr8:103146288	103,146,288	C	G	0.929	1.0248	0.0177	0.1668
8	rs77519446	102,162,237	A	G	0.803	0.9429	0.0489	0.2294
8	rs13257351	109,125,117	A	G	1.01	1.02491	0.0168	0.1438
8	rs200932878	108,355,885	T	TAAGA	0.844	0.92737	0.0672	0.2623
8	rs656406	109,173,843	A	G	1.01	1.0024	0.0139	0.8635
8	rs1789975	107,445,448	A	G	1.01	0.97765	0.0145	0.1191
8	rs62518510	103,026,250	A	G	0.762	0.91925	0.0681	0.216
8	rs16898296	101,384,198	T	C	0.862	1.02984	0.0653	0.6523
8	rs181640861	104,488,407	T	C	0.888	0.94582	0.0696	0.4235
8	rs36082386	100,261,389	G	GT	0.994	0.9994	0.0148	0.9689
8	rs150325035	103,482,276	A	G	0.952	1.0245	0.0244	0.3195
8	rs35433522	102,274,612	T	TA	0.858	1.00844	0.0167	0.6125
8	rs4437625	108,135,536	T	C	0.995	0.98886	0.0146	0.4428
8	rs10086112	105,053,356	A	G	0.999	0.97893	0.014	0.1272
8	rs2957418	106,273,257	C	G	0.999	1.01167	0.0138	0.4015
8	rs77635126	100,164,084	T	G	0.758	1.11717	0.0568	0.05088
8	rs1370798	105,728,054	C	G	0.986	1.03076	0.0191	0.1129
8	rs11998224	107,312,350	A	T	0.999	0.99531	0.0201	0.8161
8	rs56265177	100,219,121	A	C	0.998	0.9994	0.0173	0.9744
8	rs4734668	103,791,669	T	C	0.996	0.98965	0.0138	0.4531
8	rs62526082	107,176,819	A	C	0.989	0.98768	0.0241	0.6072
8	rs12547056	106,753,738	A	C	0.976	0.96725	0.0152	0.02793
8	rs13256200	105,953,787	T	G	0.959	1.00461	0.0165	0.7827

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Autism Spectrum Disorder GWAS Summary Statistics (PGC)

Mirror of Psychiatric Genomics Consortium (PGC) summary statistics for Autism Spectrum Disorder (asd2019), redistributed in a single Apache Parquet file for use with OpenMed Genomics.

Source

Primary citation: Grove et al., Nature Genetics 2019
Original distributor: Psychiatric Genomics Consortium (https://pgc.unc.edu/for-researchers/download-results/)

This mirror exists only because the upstream OpenMed mirror became inaccessible. No modifications have been made to the underlying data; per-shard parquet files were concatenated into a single file for convenient streaming.

File

pgc-autism_asd2019.parquet -- one Apache Parquet file containing the full summary statistics table in the PGC's published schema (SNP, CHR, BP, A1, A2, FRQ, OR/BETA, SE, P, ...).

Usage

import polars as pl
df = pl.read_parquet(
    "https://huggingface.co/datasets/turmex2/pgc-autism/resolve/main/pgc-autism_asd2019.parquet"
)

License & terms of use

PGC summary statistics are released for non-commercial research use only. Do not attempt to re-identify individuals. Results derived from these data are not a clinical diagnosis. See the original publication for the full data-use agreement.

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Autism Spectrum Disorder GWAS Summary Statistics (PGC)

Source

File

Usage

License & terms of use

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