Cell2Sentence4Longevity
Collection
2 items • Updated
age stringclasses 88
values | donor_id stringlengths 1 84 | tissue_in_publication stringclasses 5
values | anatomical_position stringclasses 12
values | method stringclasses 2
values | cdna_plate stringclasses 57
values | library_plate stringclasses 57
values | notes stringclasses 17
values | cdna_well stringclasses 292
values | assay_ontology_term_id stringclasses 14
values | sample_id stringlengths 8 68 ⌀ | replicate stringclasses 4
values | 10X_run stringclasses 51
values | ambient_removal stringclasses 2
values | donor_method stringclasses 12
values | donor_assay stringclasses 15
values | donor_tissue stringclasses 23
values | donor_tissue_assay stringclasses 38
values | cell_type_ontology_term_id stringclasses 262
values | compartment stringclasses 8
values | broad_cell_class stringclasses 22
values | free_annotation stringclasses 86
values | manually_annotated stringclasses 2
values | published_2022 stringclasses 2
values | n_genes_by_counts stringlengths 2 6 ⌀ | total_counts stringlengths 3 10 ⌀ | total_counts_mt stringlengths 3 11 ⌀ | pct_counts_mt stringlengths 3 21 ⌀ | total_counts_ercc stringclasses 518
values | pct_counts_ercc stringclasses 523
values | _scvi_batch stringclasses 16
values | _scvi_labels stringclasses 3
values | scvi_leiden_donorassay_full stringclasses 46
values | ethnicity_original stringclasses 5
values | scvi_leiden_res05_tissue stringclasses 41
values | sample_number stringclasses 2
values | organism_ontology_term_id stringclasses 1
value | suspension_type stringclasses 3
values | tissue_type stringclasses 2
values | disease_ontology_term_id stringclasses 26
values | is_primary_data stringclasses 2
values | tissue_ontology_term_id stringclasses 90
values | sex_ontology_term_id stringclasses 3
values | self_reported_ethnicity_ontology_term_id stringclasses 27
values | development_stage_ontology_term_id stringclasses 88
values | cell_type stringclasses 262
values | assay stringclasses 14
values | disease stringclasses 26
values | organism stringclasses 1
value | sex stringclasses 3
values | tissue stringclasses 90
values | self_reported_ethnicity stringclasses 27
values | development_stage stringclasses 88
values | observation_joinid stringlengths 10 10 | cell_sentence stringlengths 12.3k 18.5k ⌀ | dataset_id stringclasses 93
values | age_bin stringclasses 5
values |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
65.0 | D5_3296 | null | null | null | null | null | null | null | EFO:0009922 | null | null | null | null | null | null | null | null | CL:0000786 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | missing | null | null | NCBITaxon:9606 | cell | tissue | PATO:0000461 | false | UBERON:0012648 | PATO:0000383 | HANCESTRO:0008 | HsapDv:0000159 | plasma cell | 10x 3' v3 | normal | Homo sapiens | female | ampulla of fallopian tube | Asian | 65-year-old stage | uKrdn3Oh)} | MT-ATP6 RPS27 MT-ND3 MT-CO3 RPS29 PTMA RPL21 MT-CO2 EEF1A1 MT-CO1 HLA-DRA CD74 MT-ND4 RPLP1 RPL34 RPL13 MT-CYB RPL37A RPL10 B2M RPS21 RPS23 RPL3 RPL41 RPL37 RPL39 RPS27A TMSB4X RPS14 RPS7 RPS25 RPL32 RPL18A FTH1 RPL11 TPT1 RPS15A RPS3A MT-ND5 RPL26 SRGN MT-ND1 RPS19 RPL28 RPL17 HSP90AB1 RPS15 RPL15 RPL29 RPS18 RPL30 RP... | 0436a180-cb44-47ba-8ffa-807b7a468469 | 60-80 |
67.0 | Madissoon_Meyer_2020_367C | null | null | null | null | null | null | null | EFO:0009899 | null | null | null | null | null | null | null | null | CL:0002399 | null | null | null | null | null | 2281 | 8782.0 | null | null | null | null | null | null | null | missing | null | null | NCBITaxon:9606 | cell | tissue | PATO:0000461 | false | UBERON:0002048 | PATO:0000384 | unknown | HsapDv:0000161 | CD1c-positive myeloid dendritic cell | 10x 3' v2 | normal | Homo sapiens | male | lung | unknown | 67-year-old stage | BHvTQwi9w? | MALAT1 ACTB CD74 TMSB4X HLA-DRA FTH1 TMSB10 HLA-DRB1 FTL VIM HLA-DPB1 HLA-DPA1 CST3 S100A4 UBB S100A10 B2M PFN1 HSPB1 RPL41 HLA-DQB1 HSPA1A MTCO2P22 HSPA1B CFL1 RPS27 RPLP1 RPL18A RPL13 RPL10 HSP90AA1 JUNB ACTG1 SH3BGRL3 HLA-DRB5 EEF1A1 DNAJB1 PTMA SRGN RPLP2 RPS15 MYL6 RPL13A S100A11 MTCO3P18 SERF2 UBC S100A6 GAPDH RP... | 1e6a6ef9-7ec9-4c90-bbfb-2ad3c3165fd1 | 60-80 |
67.0 | SG_HEL_H242 | null | null | null | null | null | null | null | EFO:0009900 | d5759996-8062-4d52-aed3-5a9c69deffbe | null | null | null | null | null | null | null | CL:0000625 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | missing | null | null | null | cell | tissue | PATO:0000461 | true | UBERON:0000178 | PATO:0000383 | HANCESTRO:0597 | HsapDv:0000161 | CD8-positive, alpha-beta T cell | 10x 5' v2 | normal | null | female | blood | Singaporean Malay | 67-year-old stage | 8bBSjbr@Uk | null | 9deda9ad-6a71-401e-b909-5263919d85f9 | 60-80 |
53.0 | TxK1 | null | null | null | null | null | null | null | EFO:0009899 | null | null | null | null | null | null | null | null | CL:0000814 | lymphoid | null | null | null | null | null | null | null | null | null | null | null | null | null | missing | null | null | NCBITaxon:9606 | cell | tissue | PATO:0000461 | false | UBERON:0000362 | PATO:0000383 | unknown | HsapDv:0000147 | mature NK T cell | 10x 3' v2 | normal | Homo sapiens | female | renal medulla | unknown | 53-year-old stage | $Z4%^gt1KH | MALAT1 B2M HLA-B RPLP1 RPS6 MT-CO1 RPS27 RPS15A MT-CO2 RPS2 MT-CO3 KLF6 RPL27A RPS14 RPL13 RPL7 RPS13 BTG1 RPL31 RPL18A RPL14 EIF1 RPS27A RPL32 RPL13A TXNIP RPL26 CD69 RPS9 RPS29 DDX5 TMSB10 ID2 RPL23A RPL21 MT-ND4 HLA-C RPL29 RPS18 H3-3B RPS11 KLRD1 RPL5 NKG7 RPS19 RPL18 CHCHD2 GZMK CLEC2B RPL28 RPLP2 HLA-A IL7R RPL6 ... | 20d87640-4be8-487f-93d4-dce38378d00f | 40-60 |
76.0 | 3535 | null | null | null | null | null | null | null | EFO:0009922 | null | null | null | null | null | null | null | null | CL:1000768 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | missing | null | null | NCBITaxon:9606 | nucleus | tissue | PATO:0000461 | false | UBERON:0001225 | PATO:0000384 | HANCESTRO:0005 | HsapDv:0000170 | kidney connecting tubule epithelial cell | 10x 3' v3 | normal | Homo sapiens | male | cortex of kidney | European | 76-year-old stage | *(1+svX9~| | MALAT1 PDE4D SLC8A1 MECOM KAZN NEAT1 PRKG1 NFE2L2 ESRRG ARL15 PLEKHA5 BICC1 TOP6BL CCSER1 MAGI1 TOX3 ADAMTS16 HSD11B2 FOXP1 KCNIP4 PARD3 AGAP1 ZBTB20 PTK2 GLIS3 SPIDR MAP4 IMMP2L GRIP1 PKHD1 SHANK2 MED13L CADPS2 LPP PDE10A ACAP2 PRKAG2 RERE SCN2A KIAA1217 ERBB4 NCOR1 MACF1 NAALADL2 ADK KCNJ15 COBLL1 TRPM3 FTX PAX8 MSI2... | 0b75c598-0893-4216-afe8-5414cab7739d | 60-80 |
63.0 | Wu_Zhou_2021_P35 | null | null | null | null | null | null | null | EFO:0700011 | null | null | null | null | null | null | null | null | CL:0002062 | null | null | null | null | null | 807 | 1229.0 | null | null | null | null | null | null | null | missing | null | null | NCBITaxon:9606 | cell | tissue | MONDO:0005061 | true | UBERON:0002048 | PATO:0000384 | unknown | HsapDv:0000157 | pulmonary alveolar type 1 cell | GEXSCOPE technology | lung adenocarcinoma | Homo sapiens | male | lung | unknown | 63-year-old stage | upB(OEUMk+ | CEACAM6 MALAT1 MTND4P33 RPS27 PTMA MTCO2P22 SOX4 MYL6 MTATP6P29 HSP90AA1 MTND2P13 CD55 CD24 TMSB4X YWHAB ANXA1 ACTG1 S100A6 CPM RPS19 EMP2 S100A10 MYL12A TAX1BP1 RPS2 TPT1 MTND5P17 RPL37 PABPC1 RPL37A RPL8 SCGB3A2 SCEL CALM2 RPL10 SLPI ACTB EEF1A1 CLIC5 SUCLG1 PARP14 MTND4LP30 HSPB1 IDS MTND3P6 HSP90AB1 KRT7 SFSWAP CLD... | 1e6a6ef9-7ec9-4c90-bbfb-2ad3c3165fd1 | 60-80 |
20.0 | HM5 | null | null | null | null | null | null | null | EFO:0011025 | null | null | null | null | null | null | null | null | CL:0000189 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | missing | null | null | NCBITaxon:9606 | nucleus | tissue | PATO:0000461 | true | UBERON:0014892 | unknown | unknown | HsapDv:0000114 | slow muscle cell | 10x 5' v1 | normal | Homo sapiens | unknown | skeletal muscle organ, vertebrate | unknown | 20-year-old stage | KQj;J;v?#( | MALAT1 TTN MYBPC1 NEB NEAT1 TNNT1 PDLIM3 ACTA1 TPM3 TRDN ACTN2 PDE4DIP MIR133A1HG MYH7B PDLIM5 ATP2A2 MYH7 CAPN3 NRAP MYOT RASA4 USP54 HSPB7 SVIL ANK1 CMYA5 SRSF10 DST MIR1-1HG CFLAR MYL2 HNRNPU RBFOX1 AGL MYOM1 TPM2 TCAP MBNL1 TRIM54 KIAA1217 DMD RHOBTB1 TAF1D ANKRD10 MAP4 MDH1 N4BP2L2 AKAP9 MRTFB BCL6 RPS16 VPS8 ACAD... | 15d374d6-0dfd-4d8e-ade7-81f73dc921ee | 0-20 |
49.0 | SG_HEL_H108 | null | null | null | null | null | null | null | EFO:0009900 | 78d11a99-f23f-4d08-84b4-798432b008c7 | null | null | null | null | null | null | null | CL:0000763 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | missing | null | null | null | cell | tissue | PATO:0000461 | true | UBERON:0000178 | PATO:0000383 | HANCESTRO:0598 | HsapDv:0000143 | myeloid cell | 10x 5' v2 | normal | null | female | blood | Singaporean Indian | 49-year-old stage | ax!gcQqexO | null | 9deda9ad-6a71-401e-b909-5263919d85f9 | 40-60 |
47.0 | homosapiens_None_2023_None_sikkemalisa_001_d10_1101_2022_03_10_483747THD0010 | null | null | null | null | null | null | null | EFO:0011025 | null | null | null | null | null | null | null | null | CL:0002145 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | missing | null | null | NCBITaxon:9606 | cell | tissue | PATO:0000461 | false | UBERON:0008946 | PATO:0000384 | HANCESTRO:0463 | HsapDv:0000141 | ciliated columnar cell of tracheobronchial tree | 10x 5' v1 | normal | Homo sapiens | male | lung parenchyma | American | 47-year-old stage | {K7CxFp|%H | MT-CO2 MT-ND3 MT-CO1 MALAT1 MT-CO3 MT-CYB MT-ND4L MT-ATP8 MT-ND4 S100A6 MT-ND2 MT-ND1 FTH1 HSP90AA1 RPS27 RPL37A RPL28 RPS15 MT-ND5 SCGB3A1 MT-ATP6 RPL23A CFAP276 EEF1A1 MUC4 GSTP1 DYNLL1 ADCY9 PFDN5 CALM1 RPL37 YBX1 SFTA2 RPL34 TPT1 TPPP3 CFAP157 RPL32 CHCHD2 FOXJ1 RPL22 TUBB4B RAB11FIP5 NPM2 REXO2 CDK10 PLPP2 PTMA AC... | 066943a2-fdac-4b29-b348-40cede398e4e | 40-60 |
37.0 | JP_RIK_H054 | null | null | null | null | null | null | null | EFO:0009900 | 7176f9e7-1ae3-445d-90d9-8a3c8ceac5e1 | null | null | null | null | null | null | null | CL:0000763 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | missing | null | null | null | cell | tissue | PATO:0000461 | true | UBERON:0000178 | PATO:0000383 | HANCESTRO:0019 | HsapDv:0000131 | myeloid cell | 10x 5' v2 | normal | null | female | blood | Japanese | 37-year-old stage | EN`e=ujuhP | null | 9deda9ad-6a71-401e-b909-5263919d85f9 | 20-40 |
29.0 | homosapiens_None_2023_None_sikkemalisa_001_d10_1101_2022_03_10_483747VUHD104 | null | null | null | null | null | null | null | EFO:0011025 | null | null | null | null | null | null | null | null | CL:0019019 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | missing | null | null | NCBITaxon:9606 | cell | tissue | PATO:0000461 | false | UBERON:0008946 | PATO:0000384 | HANCESTRO:0010 | HsapDv:0000123 | tracheobronchial smooth muscle cell | 10x 5' v1 | normal | Homo sapiens | male | lung parenchyma | African | 29-year-old stage | rcNGRG0{4( | TAGLN TPM2 MT-CO1 MYL9 ACTB ACTG2 MT-CO2 PPP1R14A MT-CYB S100A4 MT-CO3 ACTA2 RPLP1 TPM1 ADIRF MYL6 IGFBP7 RPS12 S100A6 TMSB4X VIM MT-ND4L DSTN MGP HSPB1 FN1 CST3 EEF1A1 MYH11 RPL10 MCAM RPS26 MT-ND1 GSTP1 RPL34 SPARCL1 MT2A RPS21 RPL32 SH3BGRL FLNA CALM1 MT-ATP8 FTH1 RPS8 MT-ND2 COL6A2 ID3 RPS23 RCAN2 NEXN SELENOM AEBP... | 066943a2-fdac-4b29-b348-40cede398e4e | 20-40 |
59.0 | Rep_C_1111 | null | null | null | null | null | null | null | EFO:0030004 | null | null | null | null | null | null | null | null | CL:0000860 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | missing | null | null | NCBITaxon:9606 | cell | tissue | MONDO:0100096 | true | UBERON:0000178 | PATO:0000384 | HANCESTRO:0005 | HsapDv:0000153 | classical monocyte | 10x 5' transcription profiling | COVID-19 | Homo sapiens | male | blood | European | 59-year-old stage | psdvFZWJ5L | S100A9 S100A8 MT-CO1 MT-CO2 MT-CO3 FTL ACTB RPLP1 TMSB4X TMSB10 LYZ MT-ND3 B2M S100A12 S100A6 S100A4 FTH1 MT-CYB RPL39 RPL30 MT-ND1 EEF1A1 RPL28 RPL10 MT-ND4 MT-ATP6 RPS27 MT-ND4L TPT1 RPS24 RPS28 MT-ATP8 SH3BGRL3 RPS12 FOS GAPDH RPS13 RPL32 TYROBP RPS15 LGALS1 RPS27A PFN1 MT-ND2 FAU RPL34 EIF1 RPL26 CD74 RPL35A S100A1... | 01ad3cd7-3929-4654-84c0-6db05bd5fd59 | 40-60 |
67.0 | Rep_C_1018 | null | null | null | null | null | null | null | EFO:0030004 | null | null | null | null | null | null | null | null | CL:0000236 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | missing | null | null | NCBITaxon:9606 | cell | tissue | MONDO:0100096 | true | UBERON:0000178 | PATO:0000384 | HANCESTRO:0008 | HsapDv:0000161 | B cell | 10x 5' transcription profiling | COVID-19 | Homo sapiens | male | blood | Asian | 67-year-old stage | LY5r(wyHZG | CD74 MALAT1 RPL32 EEF1A1 MT-CO2 RPS23 RPS12 RPS27 IGLV1-51 RPL10 RPS13 RPL19 RPS28 RPS15A RPS7 HLA-DRA RPL14 B2M RPL34 RPL28 RPL18A RPLP2 RPL30 RPL15 RPS8 RPS4X RPL35A RPL8 CD69 RPL7A RPS14 EIF1 RPL18 RPL13A RPL12 NACA RACK1 RPL22 RPLP1 CD37 RPS15 TMSB10 RPS18 RPL9 RPS25 RPL13 RPL23A TMSB4X MT-CO3 RPL37 RPL39 MT-ND3 BT... | 01ad3cd7-3929-4654-84c0-6db05bd5fd59 | 60-80 |
82.0 | 94 | null | null | null | null | null | null | null | EFO:0009922 | null | null | null | null | null | null | null | null | CL:0000128 | null | null | null | null | null | 1105 | 1953 | null | 0.20481311 | null | null | null | null | null | missing | null | null | NCBITaxon:9606 | nucleus | tissue | PATO:0000461 | true | UBERON:0000451 | PATO:0000384 | unknown | HsapDv:0000208 | oligodendrocyte | 10x 3' v3 | normal | Homo sapiens | male | prefrontal cortex | unknown | 82-year-old stage | =%iz94yyN- | PPP2R2B CADM2 QKI MAGI2 ST18 IL1RAPL1 PCDH9 MALAT1 UNC5C PIP4K2A CTNNA3 SPOCK1 DLG2 RNF220 ANK3 SIK3 PTPRD EXOC6B SLC24A2 NRXN3 DOCK5 DNM3 PEX5L NPAS3 C10orf90 SLAIN1 SGMS1 ENOX1 FRMD5 NCAM2 ANO4 AGPAT4 DLG1 MED13L PHLPP1 CDH12 AGAP1 TJP1 NCKAP5 ZNF638 EDIL3 ARAP2 MAP7 WWOX BCAS1 GNAI1 PRKACB COBL ALCAM NKAIN2 UGT8 PDE... | 0a2d7e87-c3c0-4ed2-86df-ae18811fcc16 | 80+ |
61.0 | TSP2 | Lung | ProxMedialDistal | 10X | nan | nan | None | nan | EFO:0009922 | TSP2_Lung_proxmedialdistal_10X_1_1 | 1 | TSP2_Lung_proxmedialdistal_10X_1_1 | decontx | TSP2_10X | TSP2_10X_3Prime_v3.1 | TSP2_Lung | TSP2_Lung_10X_3Prime_v3.1 | CL:0000860 | Immune | myeloid leukocyte | classical monocyte | True | True | 1713 | 4290.0 | 88.0 | 2.051282051282051 | 0.0 | 0.0 | 2 | 0 | 8 | Black | 7 | 1 | NCBITaxon:9606 | cell | tissue | PATO:0000461 | false | UBERON:0002048 | PATO:0000383 | HANCESTRO:0016 | HsapDv:0000155 | classical monocyte | 10x 3' v3 | normal | Homo sapiens | female | lung | African American or Afro-Caribbean | 61-year-old stage | k5#lg?zx|+ | S100A9 S100A8 FTL LYZ B2M TMSB4X RPLP1 S100A12 EEF1A1 RPL13 TPT1 CTSS S100A4 RPL10 ACTB RPS6 RPL39 CYBA VCAN TMSB10 RPS24 RPL23 RPL9 RPS2 RPL28 S100A11 RPS18 RPL32 RPL34 RPS8 S100A6 RPS14 RPL13A CD14 RPL41 RPS3A FOS RPS19 MNDA UBA52 TYROBP RGS2 RPL7A RPL19 RPS27A RPL11 RPS13 RPL18 GAPDH RPS9 RPS12 FTH1 CYBB MALAT1 RPL1... | 0d2ee4ac-05ee-40b2-afb6-ebb584caa867 | 60-80 |
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