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pylp/pylp | pylp/utils/paths.py | make_readable_path | def make_readable_path(path):
"""Make a path more "readable"""
home = os.path.expanduser("~")
if path.startswith(home):
path = "~" + path[len(home):]
return path | python | def make_readable_path(path):
"""Make a path more "readable"""
home = os.path.expanduser("~")
if path.startswith(home):
path = "~" + path[len(home):]
return path | [
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xflr6/bitsets | bitsets/combos.py | shortlex | def shortlex(start, other, excludestart=False):
"""Yield all unions of start with other in shortlex order.
>>> ['{:03b}'.format(s) for s in shortlex(0, [0b100, 0b010, 0b001])]
['000', '100', '010', '001', '110', '101', '011', '111']
>>> ', '.join(''.join(sorted(s))
... for s in shortlex(set(), [{'... | python | def shortlex(start, other, excludestart=False):
"""Yield all unions of start with other in shortlex order.
>>> ['{:03b}'.format(s) for s in shortlex(0, [0b100, 0b010, 0b001])]
['000', '100', '010', '001', '110', '101', '011', '111']
>>> ', '.join(''.join(sorted(s))
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>>> ', '.join(''.join(sorted(s))
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xflr6/bitsets | bitsets/combos.py | reverse_shortlex | def reverse_shortlex(end, other, excludeend=False):
"""Yield all intersections of end with other in reverse shortlex order.
>>> ['{:03b}'.format(s) for s in reverse_shortlex(0b111, [0b011, 0b101, 0b110])]
['111', '011', '101', '110', '001', '010', '100', '000']
>>> ', '.join(''.join(sorted(s))
...... | python | def reverse_shortlex(end, other, excludeend=False):
"""Yield all intersections of end with other in reverse shortlex order.
>>> ['{:03b}'.format(s) for s in reverse_shortlex(0b111, [0b011, 0b101, 0b110])]
['111', '011', '101', '110', '001', '010', '100', '000']
>>> ', '.join(''.join(sorted(s))
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['111', '011', '101', '110', '001', '010', '100', '000']
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druids/django-chamber | chamber/models/fields.py | RestrictedFileFieldMixin.generate_filename | def generate_filename(self, instance, filename):
"""
removes UTF chars from filename
"""
from unidecode import unidecode
return super().generate_filename(instance, unidecode(force_text(filename))) | python | def generate_filename(self, instance, filename):
"""
removes UTF chars from filename
"""
from unidecode import unidecode
return super().generate_filename(instance, unidecode(force_text(filename))) | [
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PaulMcMillan/tasa | tasa/store.py | Queue.next | def next(self):
""" Retrieve the next item in the queue.
Returns deserialized value, or None if there were no entries
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"""
if self.blocking >= 0:
# returns queue name and item, we just need item
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""" Retrieve the next item in the queue.
Returns deserialized value, or None if there were no entries
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"""
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# returns queue name and item, we just need item
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PaulMcMillan/tasa | tasa/store.py | Queue.send | def send(self, *args):
""" Send a value to this LIFO Queue.
Provided argument is serialized and pushed out. Don't send None.
"""
# this and the serializer could use some streamlining
if None in args:
raise TypeError('None is not a valid queue item.')
serializ... | python | def send(self, *args):
""" Send a value to this LIFO Queue.
Provided argument is serialized and pushed out. Don't send None.
"""
# this and the serializer could use some streamlining
if None in args:
raise TypeError('None is not a valid queue item.')
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PaulMcMillan/tasa | tasa/store.py | Queue.clear | def clear(self):
""" Clear any existing values from this queue. """
logger.debug('Clearing queue: "%s"', self.name)
return self.redis.delete(self.name) | python | def clear(self):
""" Clear any existing values from this queue. """
logger.debug('Clearing queue: "%s"', self.name)
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PierreRust/apigpio | apigpio/apigpio.py | u2i | def u2i(uint32):
"""
Converts a 32 bit unsigned number to signed.
uint32:= an unsigned 32 bit number
...
print(u2i(4294967272))
-24
print(u2i(37))
37
...
"""
mask = (2 ** 32) - 1
if uint32 & (1 << 31):
v = uint32 | ~mask
else:
v = uint32 & mask
r... | python | def u2i(uint32):
"""
Converts a 32 bit unsigned number to signed.
uint32:= an unsigned 32 bit number
...
print(u2i(4294967272))
-24
print(u2i(37))
37
...
"""
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v = uint32 | ~mask
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PierreRust/apigpio | apigpio/apigpio.py | _u2i | def _u2i(uint32):
"""
Converts a 32 bit unsigned number to signed. If the number
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"""
v = u2i(uint32)
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if exceptions:
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retur... | python | def _u2i(uint32):
"""
Converts a 32 bit unsigned number to signed. If the number
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"""
v = u2i(uint32)
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PierreRust/apigpio | apigpio/apigpio.py | _callback_handler.append | def append(self, cb):
"""Adds a callback."""
self.callbacks.append(cb.callb)
self.monitor = self.monitor | cb.callb.bit
yield from self.pi._pigpio_aio_command(_PI_CMD_NB, self.handle,
self.monitor) | python | def append(self, cb):
"""Adds a callback."""
self.callbacks.append(cb.callb)
self.monitor = self.monitor | cb.callb.bit
yield from self.pi._pigpio_aio_command(_PI_CMD_NB, self.handle,
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PierreRust/apigpio | apigpio/apigpio.py | _callback_handler.remove | def remove(self, cb):
"""Removes a callback."""
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self.callbacks.remove(cb)
new_monitor = 0
for c in self.callbacks:
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if new_monitor != self.monitor:
self.monitor = new_monitor
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"""Removes a callback."""
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self.callbacks.remove(cb)
new_monitor = 0
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PierreRust/apigpio | apigpio/apigpio.py | Pi._pigpio_aio_command | def _pigpio_aio_command(self, cmd, p1, p2,):
"""
Runs a pigpio socket command.
sl:= command socket and lock.
cmd:= the command to be executed.
p1:= command parameter 1 (if applicable).
p2:= command parameter 2 (if applicable).
"""
with (yield from self... | python | def _pigpio_aio_command(self, cmd, p1, p2,):
"""
Runs a pigpio socket command.
sl:= command socket and lock.
cmd:= the command to be executed.
p1:= command parameter 1 (if applicable).
p2:= command parameter 2 (if applicable).
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with (yield from self... | [
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PierreRust/apigpio | apigpio/apigpio.py | Pi._pigpio_aio_command_ext | def _pigpio_aio_command_ext(self, cmd, p1, p2, p3, extents, rl=True):
"""
Runs an extended pigpio socket command.
sl:= command socket and lock.
cmd:= the command to be executed.
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p2:= command parameter 2 (if applica... | python | def _pigpio_aio_command_ext(self, cmd, p1, p2, p3, extents, rl=True):
"""
Runs an extended pigpio socket command.
sl:= command socket and lock.
cmd:= the command to be executed.
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PierreRust/apigpio | apigpio/apigpio.py | Pi.store_script | def store_script(self, script):
"""
Store a script for later execution.
script:= the script text as a series of bytes.
Returns a >=0 script id if OK.
...
sid = pi.store_script(
b'tag 0 w 22 1 mils 100 w 22 0 mils 100 dcr p0 jp 0')
...
"""
... | python | def store_script(self, script):
"""
Store a script for later execution.
script:= the script text as a series of bytes.
Returns a >=0 script id if OK.
...
sid = pi.store_script(
b'tag 0 w 22 1 mils 100 w 22 0 mils 100 dcr p0 jp 0')
...
"""
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PierreRust/apigpio | apigpio/apigpio.py | Pi.run_script | def run_script(self, script_id, params=None):
"""
Runs a stored script.
script_id:= id of stored script.
params:= up to 10 parameters required by the script.
...
s = pi.run_script(sid, [par1, par2])
s = pi.run_script(sid)
s = pi.run_script(sid, [1, 2,... | python | def run_script(self, script_id, params=None):
"""
Runs a stored script.
script_id:= id of stored script.
params:= up to 10 parameters required by the script.
...
s = pi.run_script(sid, [par1, par2])
s = pi.run_script(sid)
s = pi.run_script(sid, [1, 2,... | [
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script_id:= id of stored script.
params:= up to 10 parameters required by the script.
...
s = pi.run_script(sid, [par1, par2])
s = pi.run_script(sid)
s = pi.run_script(sid, [1, 2, 3, 4, 5, 6, 7, 8, 9, 10])
... | [
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PierreRust/apigpio | apigpio/apigpio.py | Pi.script_status | def script_status(self, script_id):
"""
Returns the run status of a stored script as well as the
current values of parameters 0 to 9.
script_id:= id of stored script.
The run status may be
. .
PI_SCRIPT_INITING
PI_SCRIPT_HALTED
PI_SCRIPT_RUNNING... | python | def script_status(self, script_id):
"""
Returns the run status of a stored script as well as the
current values of parameters 0 to 9.
script_id:= id of stored script.
The run status may be
. .
PI_SCRIPT_INITING
PI_SCRIPT_HALTED
PI_SCRIPT_RUNNING... | [
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PierreRust/apigpio | apigpio/apigpio.py | Pi.stop_script | def stop_script(self, script_id):
"""
Stops a running script.
script_id:= id of stored script.
...
status = pi.stop_script(sid)
...
"""
res = yield from self._pigpio_aio_command(_PI_CMD_PROCS, script_id, 0)
return _u2i(res) | python | def stop_script(self, script_id):
"""
Stops a running script.
script_id:= id of stored script.
...
status = pi.stop_script(sid)
...
"""
res = yield from self._pigpio_aio_command(_PI_CMD_PROCS, script_id, 0)
return _u2i(res) | [
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script_id:= id of stored script.
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status = pi.stop_script(sid)
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PierreRust/apigpio | apigpio/apigpio.py | Pi.delete_script | def delete_script(self, script_id):
"""
Deletes a stored script.
script_id:= id of stored script.
...
status = pi.delete_script(sid)
...
"""
res = yield from self._pigpio_aio_command(_PI_CMD_PROCD, script_id, 0)
return _u2i(res) | python | def delete_script(self, script_id):
"""
Deletes a stored script.
script_id:= id of stored script.
...
status = pi.delete_script(sid)
...
"""
res = yield from self._pigpio_aio_command(_PI_CMD_PROCD, script_id, 0)
return _u2i(res) | [
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...
status = pi.delete_script(sid)
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PierreRust/apigpio | apigpio/apigpio.py | Pi.clear_bank_1 | def clear_bank_1(self, bits):
"""
Clears gpios 0-31 if the corresponding bit in bits is set.
bits:= a 32 bit mask with 1 set if the corresponding gpio is
to be cleared.
A returned status of PI_SOME_PERMITTED indicates that the user
is not allowed to write to one or... | python | def clear_bank_1(self, bits):
"""
Clears gpios 0-31 if the corresponding bit in bits is set.
bits:= a 32 bit mask with 1 set if the corresponding gpio is
to be cleared.
A returned status of PI_SOME_PERMITTED indicates that the user
is not allowed to write to one or... | [
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bits:= a 32 bit mask with 1 set if the corresponding gpio is
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A returned status of PI_SOME_PERMITTED indicates that the user
is not allowed to write to one or more of the gpios.
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PierreRust/apigpio | apigpio/apigpio.py | Pi.set_bank_1 | def set_bank_1(self, bits):
"""
Sets gpios 0-31 if the corresponding bit in bits is set.
bits:= a 32 bit mask with 1 set if the corresponding gpio is
to be set.
A returned status of PI_SOME_PERMITTED indicates that the user
is not allowed to write to one or more of... | python | def set_bank_1(self, bits):
"""
Sets gpios 0-31 if the corresponding bit in bits is set.
bits:= a 32 bit mask with 1 set if the corresponding gpio is
to be set.
A returned status of PI_SOME_PERMITTED indicates that the user
is not allowed to write to one or more of... | [
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bits:= a 32 bit mask with 1 set if the corresponding gpio is
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A returned status of PI_SOME_PERMITTED indicates that the user
is not allowed to write to one or more of the gpios.
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PierreRust/apigpio | apigpio/apigpio.py | Pi.set_mode | def set_mode(self, gpio, mode):
"""
Sets the gpio mode.
gpio:= 0-53.
mode:= INPUT, OUTPUT, ALT0, ALT1, ALT2, ALT3, ALT4, ALT5.
...
pi.set_mode( 4, apigpio.INPUT) # gpio 4 as input
pi.set_mode(17, apigpio.OUTPUT) # gpio 17 as output
pi.set_mode(24, apig... | python | def set_mode(self, gpio, mode):
"""
Sets the gpio mode.
gpio:= 0-53.
mode:= INPUT, OUTPUT, ALT0, ALT1, ALT2, ALT3, ALT4, ALT5.
...
pi.set_mode( 4, apigpio.INPUT) # gpio 4 as input
pi.set_mode(17, apigpio.OUTPUT) # gpio 17 as output
pi.set_mode(24, apig... | [
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gpio:= 0-53.
mode:= INPUT, OUTPUT, ALT0, ALT1, ALT2, ALT3, ALT4, ALT5.
...
pi.set_mode( 4, apigpio.INPUT) # gpio 4 as input
pi.set_mode(17, apigpio.OUTPUT) # gpio 17 as output
pi.set_mode(24, apigpio.ALT2) # gpio 24 as ALT2
... | [
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PierreRust/apigpio | apigpio/apigpio.py | Pi.get_mode | def get_mode(self, gpio):
"""
Returns the gpio mode.
gpio:= 0-53.
Returns a value as follows
. .
0 = INPUT
1 = OUTPUT
2 = ALT5
3 = ALT4
4 = ALT0
5 = ALT1
6 = ALT2
7 = ALT3
. .
...
print(pi... | python | def get_mode(self, gpio):
"""
Returns the gpio mode.
gpio:= 0-53.
Returns a value as follows
. .
0 = INPUT
1 = OUTPUT
2 = ALT5
3 = ALT4
4 = ALT0
5 = ALT1
6 = ALT2
7 = ALT3
. .
...
print(pi... | [
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gpio:= 0-53.
Returns a value as follows
. .
0 = INPUT
1 = OUTPUT
2 = ALT5
3 = ALT4
4 = ALT0
5 = ALT1
6 = ALT2
7 = ALT3
. .
...
print(pi.get_mode(0))
4
... | [
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PierreRust/apigpio | apigpio/apigpio.py | Pi.write | def write(self, gpio, level):
"""
Sets the gpio level.
gpio:= 0-53.
level:= 0, 1.
If PWM or servo pulses are active on the gpio they are
switched off.
...
pi.set_mode(17, pigpio.OUTPUT)
pi.write(17,0)
print(pi.read(17))
0
... | python | def write(self, gpio, level):
"""
Sets the gpio level.
gpio:= 0-53.
level:= 0, 1.
If PWM or servo pulses are active on the gpio they are
switched off.
...
pi.set_mode(17, pigpio.OUTPUT)
pi.write(17,0)
print(pi.read(17))
0
... | [
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switched off.
...
pi.set_mode(17, pigpio.OUTPUT)
pi.write(17,0)
print(pi.read(17))
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pi.write(17,1)
print(pi.read(17))
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kyzima-spb/flask-pony | flask_pony/utils.py | camelcase2list | def camelcase2list(s, lower=False):
"""Converts a camelcase string to a list."""
s = re.findall(r'([A-Z][a-z0-9]+)', s)
return [w.lower() for w in s] if lower else s | python | def camelcase2list(s, lower=False):
"""Converts a camelcase string to a list."""
s = re.findall(r'([A-Z][a-z0-9]+)', s)
return [w.lower() for w in s] if lower else s | [
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kyzima-spb/flask-pony | flask_pony/utils.py | get_route_param_names | def get_route_param_names(endpoint):
"""Returns parameter names from the route."""
try:
g = current_app.url_map.iter_rules(endpoint)
return next(g).arguments
except KeyError:
return {} | python | def get_route_param_names(endpoint):
"""Returns parameter names from the route."""
try:
g = current_app.url_map.iter_rules(endpoint)
return next(g).arguments
except KeyError:
return {} | [
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guaix-ucm/numina | numina/types/structured.py | BaseStructuredCalibration.update_meta_info | def update_meta_info(self):
"""Extract metadata from myself"""
result = super(BaseStructuredCalibration, self).update_meta_info()
result['instrument'] = self.instrument
result['uuid'] = self.uuid
result['tags'] = self.tags
result['type'] = self.name()
minfo = se... | python | def update_meta_info(self):
"""Extract metadata from myself"""
result = super(BaseStructuredCalibration, self).update_meta_info()
result['instrument'] = self.instrument
result['uuid'] = self.uuid
result['tags'] = self.tags
result['type'] = self.name()
minfo = se... | [
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jtambasco/gnuplotpy | gnuplotpy/gnuplot.py | gnuplot | def gnuplot(script_name, args_dict={}, data=[], silent=True):
'''
Call a Gnuplot script, passing it arguments and
datasets.
Args:
scipt_name(str): The name of the Gnuplot script.
args_dict(dict): A dictionary of parameters to pass
to the script. The `key` is the name of the... | python | def gnuplot(script_name, args_dict={}, data=[], silent=True):
'''
Call a Gnuplot script, passing it arguments and
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Args:
scipt_name(str): The name of the Gnuplot script.
args_dict(dict): A dictionary of parameters to pass
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jtambasco/gnuplotpy | gnuplotpy/gnuplot.py | gnuplot_2d | def gnuplot_2d(x, y, filename, title='', x_label='', y_label=''):
'''
Function to produce a general 2D plot.
Args:
x (list): x points.
y (list): y points.
filename (str): Filename of the output image.
title (str): Title of the plot. Default is '' (no title).
x_label... | python | def gnuplot_2d(x, y, filename, title='', x_label='', y_label=''):
'''
Function to produce a general 2D plot.
Args:
x (list): x points.
y (list): y points.
filename (str): Filename of the output image.
title (str): Title of the plot. Default is '' (no title).
x_label... | [
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jtambasco/gnuplotpy | gnuplotpy/gnuplot.py | gnuplot_3d_matrix | def gnuplot_3d_matrix(z_matrix, filename, title='', x_label='', y_label=''):
'''
Function to produce a general 3D plot from a 2D matrix.
Args:
z_matrix (list): 2D matrix.
filename (str): Filename of the output image.
title (str): Title of the plot. Default is '' (no title).
... | python | def gnuplot_3d_matrix(z_matrix, filename, title='', x_label='', y_label=''):
'''
Function to produce a general 3D plot from a 2D matrix.
Args:
z_matrix (list): 2D matrix.
filename (str): Filename of the output image.
title (str): Title of the plot. Default is '' (no title).
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SUNCAT-Center/CatHub | cathub/folderreader.py | FolderReader.read | def read(self, skip=[], goto_metal=None, goto_reaction=None):
"""
Get reactions from folders.
Parameters
----------
skip: list of str
list of folders not to read
goto_reaction: str
Skip ahead to this metal
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"""
Get reactions from folders.
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skip: list of str
list of folders not to read
goto_reaction: str
Skip ahead to this metal
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guaix-ucm/numina | numina/array/utils.py | slice_create | def slice_create(center, block, start=0, stop=None):
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'''Return an slice with a symmetric region around center.'''
do = coor_to_pix_1d(center - block)
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guaix-ucm/numina | numina/array/utils.py | expand_region | def expand_region(tuple_of_s, a, b, start=0, stop=None):
'''Apply expend_slice on a tuple of slices'''
return tuple(expand_slice(s, a, b, start=start, stop=stop)
for s in tuple_of_s) | python | def expand_region(tuple_of_s, a, b, start=0, stop=None):
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guaix-ucm/numina | numina/user/helpers.py | BaseWorkEnvironment.adapt_obsres | def adapt_obsres(self, obsres):
"""Adapt obsres after file copy"""
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# Remove path components
f.filename = os.path.basename(f.filename)
return obsres | python | def adapt_obsres(self, obsres):
"""Adapt obsres after file copy"""
_logger.debug('adapt observation result for work dir')
for f in obsres.images:
# Remove path components
f.filename = os.path.basename(f.filename)
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guaix-ucm/numina | numina/user/helpers.py | DiskStorageBase.store | def store(self, completed_task, resultsdir):
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guaix-ucm/numina | numina/types/datatype.py | DataType.validate | def validate(self, obj):
"""Validate convertibility to internal representation
Returns
-------
bool
True if 'obj' matches the data type
Raises
-------
ValidationError
If the validation fails
"""
if not isinstance(obj, self.... | python | def validate(self, obj):
"""Validate convertibility to internal representation
Returns
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bool
True if 'obj' matches the data type
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If the validation fails
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SUNCAT-Center/CatHub | cathub/postgresql.py | CathubPostgreSQL.delete_user | def delete_user(self, user):
""" Delete user and all data"""
assert self.user == 'catroot' or self.user == 'postgres'
assert not user == 'public'
con = self.connection or self._connect()
cur = con.cursor()
cur.execute('DROP SCHEMA {user} CASCADE;'.format(user=user))
... | python | def delete_user(self, user):
""" Delete user and all data"""
assert self.user == 'catroot' or self.user == 'postgres'
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cur = con.cursor()
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SUNCAT-Center/CatHub | cathub/postgresql.py | CathubPostgreSQL.truncate_schema | def truncate_schema(self):
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druids/django-chamber | chamber/commands/__init__.py | ProgressBarStream.write | def write(self, *args, **kwargs):
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Call the stream's write method without linebreaks at line endings.
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Call the stream's write method without linebreaks at line endings.
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arkottke/pysra | pysra/site.py | NonlinearProperty._update | def _update(self):
"""Initialize the 1D interpolation."""
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y = self.values
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... | python | def _update(self):
"""Initialize the 1D interpolation."""
if self.strains.size and self.strains.size == self.values.size:
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arkottke/pysra | pysra/site.py | SoilType.is_nonlinear | def is_nonlinear(self):
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arkottke/pysra | pysra/site.py | IterativeValue.relative_error | def relative_error(self):
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# Use the maximum strain value -- this is important for error
# calculation with frequency dependent properties
# pr... | python | def relative_error(self):
"""The relative error, in percent, between the two iterations.
"""
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# Use the maximum strain value -- this is important for error
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arkottke/pysra | pysra/site.py | Layer.duplicate | def duplicate(cls, other):
"""Create a copy of the layer."""
return cls(other.soil_type, other.thickness, other.shear_vel) | python | def duplicate(cls, other):
"""Create a copy of the layer."""
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arkottke/pysra | pysra/site.py | Layer.damping | def damping(self):
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"""Strain-compatible damping."""
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arkottke/pysra | pysra/site.py | Profile.auto_discretize | def auto_discretize(self, max_freq=50., wave_frac=0.2):
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Parameters
----------
max_freq: float
Maximum frequency of interest [Hz].
wave_frac: float
Fraction of wavelength required. Typically 1/3 to 1/5.
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"""Subdivide the layers to capture strain variation.
Parameters
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max_freq: float
Maximum frequency of interest [Hz].
wave_frac: float
Fraction of wavelength required. Typically 1/3 to 1/5.
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arkottke/pysra | pysra/site.py | Profile.location | def location(self, wave_field, depth=None, index=None):
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Parameters
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Wave field. See :class:`Location` for possible values.
depth: float, optional
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"""Create a Location for a specific depth.
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wave_field: str
Wave field. See :class:`Location` for possible values.
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arkottke/pysra | pysra/site.py | Profile.time_average_vel | def time_average_vel(self, depth):
"""Calculate the time-average velocity.
Parameters
----------
depth: float
Depth over which the average velocity is computed.
Returns
-------
avg_vel: float
Time averaged velocity.
"""
de... | python | def time_average_vel(self, depth):
"""Calculate the time-average velocity.
Parameters
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depth: float
Depth over which the average velocity is computed.
Returns
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avg_vel: float
Time averaged velocity.
"""
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arkottke/pysra | pysra/site.py | Profile.simplified_rayliegh_vel | def simplified_rayliegh_vel(self):
"""Simplified Rayliegh velocity of the site.
This follows the simplifications proposed by Urzua et al. (2017)
Returns
-------
rayleigh_vel : float
Equivalent shear-wave velocity.
"""
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"""Simplified Rayliegh velocity of the site.
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rayleigh_vel : float
Equivalent shear-wave velocity.
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arkottke/pysra | pysra/variation.py | ToroThicknessVariation.iter_thickness | def iter_thickness(self, depth_total):
"""Iterate over the varied thicknesses.
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"""Iterate over the varied thicknesses.
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arkottke/pysra | pysra/variation.py | VelocityVariation._calc_covar_matrix | def _calc_covar_matrix(self, profile):
"""Calculate the covariance matrix.
Parameters
----------
profile : site.Profile
Input site profile
Yields
------
covar : `class`:numpy.array
Covariance matrix
"""
corr = self._calc_c... | python | def _calc_covar_matrix(self, profile):
"""Calculate the covariance matrix.
Parameters
----------
profile : site.Profile
Input site profile
Yields
------
covar : `class`:numpy.array
Covariance matrix
"""
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arkottke/pysra | pysra/variation.py | ToroVelocityVariation._calc_corr | def _calc_corr(self, profile):
"""Compute the adjacent-layer correlations
Parameters
----------
profile : :class:`site.Profile`
Input site profile
Yields
------
corr : :class:`numpy.array`
Adjacent-layer correlations
"""
d... | python | def _calc_corr(self, profile):
"""Compute the adjacent-layer correlations
Parameters
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profile : :class:`site.Profile`
Input site profile
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corr : :class:`numpy.array`
Adjacent-layer correlations
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arkottke/pysra | pysra/variation.py | ToroVelocityVariation.generic_model | def generic_model(cls, site_class, **kwds):
"""Use generic model parameters based on site class.
Parameters
----------
site_class: str
Site classification. Possible options are:
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* Geomatrix CD
* USGS AB
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Site classification. Possible options are:
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arkottke/pysra | pysra/variation.py | DarendeliVariation.calc_std_damping | def calc_std_damping(damping):
"""Calculate the standard deviation as a function of damping in decimal.
Equation 7.30 from Darendeli (2001).
Parameters
----------
damping : array_like
Material damping values in decimal.
Returns
-------
std :... | python | def calc_std_damping(damping):
"""Calculate the standard deviation as a function of damping in decimal.
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damping : array_like
Material damping values in decimal.
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inspirehep/inspire-schemas | inspire_schemas/builders/authors.py | AuthorBuilder._append_to | def _append_to(self, field, element):
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Args:
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inspirehep/inspire-schemas | inspire_schemas/builders/authors.py | AuthorBuilder.add_name_variant | def add_name_variant(self, name):
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Args:
:param name: name variant for the current author.
:type name: string
"""
self._ensure_field('name', {})
self.obj['name'].setdefault('name_variants', []).append(name) | python | def add_name_variant(self, name):
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Args:
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inspirehep/inspire-schemas | inspire_schemas/builders/authors.py | AuthorBuilder.add_native_name | def add_native_name(self, name):
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Args:
:param name: native name for the current author.
:type name: string
"""
self._ensure_field('name', {})
self.obj['name'].setdefault('native_names', []).append(name) | python | def add_native_name(self, name):
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inspirehep/inspire-schemas | inspire_schemas/builders/authors.py | AuthorBuilder.add_previous_name | def add_previous_name(self, name):
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:type name: string
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inspirehep/inspire-schemas | inspire_schemas/builders/authors.py | AuthorBuilder.add_email_address | def add_email_address(self, email, hidden=None):
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inspirehep/inspire-schemas | inspire_schemas/builders/authors.py | AuthorBuilder.add_url | def add_url(self, url, description=None):
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inspirehep/inspire-schemas | inspire_schemas/builders/authors.py | AuthorBuilder.add_project | def add_project(self, name, record=None, start_date=None, end_date=None, curated=False, current=False):
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inspirehep/inspire-schemas | inspire_schemas/builders/authors.py | AuthorBuilder.add_advisor | def add_advisor(self, name, ids=None, degree_type=None, record=None, curated=False):
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inspirehep/inspire-schemas | inspire_schemas/builders/authors.py | AuthorBuilder.add_private_note | def add_private_note(self, note, source=None):
"""Add a private note.
Args:
:param comment: comment about the author.
:type comment: string
:param source: the source of the comment.
:type source: string
"""
note = {
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"""Add a private note.
Args:
:param comment: comment about the author.
:type comment: string
:param source: the source of the comment.
:type source: string
"""
note = {
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guaix-ucm/numina | numina/array/imsurfit.py | _compute_value | def _compute_value(power, wg):
"""Return the weight corresponding to single power."""
if power not in wg:
p1, p2 = power
# y power
if p1 == 0:
yy = wg[(0, -1)]
wg[power] = numpy.power(yy, p2 / 2).sum() / len(yy)
# x power
else:
xx = wg[... | python | def _compute_value(power, wg):
"""Return the weight corresponding to single power."""
if power not in wg:
p1, p2 = power
# y power
if p1 == 0:
yy = wg[(0, -1)]
wg[power] = numpy.power(yy, p2 / 2).sum() / len(yy)
# x power
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guaix-ucm/numina | numina/array/imsurfit.py | _compute_weight | def _compute_weight(powers, wg):
"""Return the weight corresponding to given powers."""
# split
pow1 = (powers[0], 0)
pow2 = (0, powers[1])
cal1 = _compute_value(pow1, wg)
cal2 = _compute_value(pow2, wg)
return cal1 * cal2 | python | def _compute_weight(powers, wg):
"""Return the weight corresponding to given powers."""
# split
pow1 = (powers[0], 0)
pow2 = (0, powers[1])
cal1 = _compute_value(pow1, wg)
cal2 = _compute_value(pow2, wg)
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guaix-ucm/numina | numina/array/imsurfit.py | imsurfit | def imsurfit(data, order, output_fit=False):
"""Fit a bidimensional polynomial to an image.
:param data: a bidimensional array
:param integer order: order of the polynomial
:param bool output_fit: return the fitted image
:returns: a tuple with an array with the coefficients of the polynomial terms
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"""Fit a bidimensional polynomial to an image.
:param data: a bidimensional array
:param integer order: order of the polynomial
:param bool output_fit: return the fitted image
:returns: a tuple with an array with the coefficients of the polynomial terms
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pvizeli/yahooweather | yahooweather.py | _yql_query | def _yql_query(yql):
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url = _YAHOO_BASE_URL.format(urlencode({'q': yql}))
# send request
_LOGGER.debug("Send request to url: %s", url)
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rawData = request.read()
# parse jason
... | python | def _yql_query(yql):
"""Fetch data from Yahoo! Return a dict if successfull or None."""
url = _YAHOO_BASE_URL.format(urlencode({'q': yql}))
# send request
_LOGGER.debug("Send request to url: %s", url)
try:
request = urlopen(url)
rawData = request.read()
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pvizeli/yahooweather | yahooweather.py | get_woeid | def get_woeid(lat, lon):
"""Ask Yahoo! who is the woeid from GPS position."""
yql = _YQL_WOEID.format(lat, lon)
# send request
tmpData = _yql_query(yql)
if tmpData is None:
_LOGGER.error("No woid is received!")
return None
# found woid?
return tmpData.get("place", {}).get(... | python | def get_woeid(lat, lon):
"""Ask Yahoo! who is the woeid from GPS position."""
yql = _YQL_WOEID.format(lat, lon)
# send request
tmpData = _yql_query(yql)
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pvizeli/yahooweather | yahooweather.py | YahooWeather.updateWeather | def updateWeather(self):
"""Fetch weather data from Yahoo! True if success."""
yql = _YQL_WEATHER.format(self._woeid, self._unit)
# send request
tmpData = _yql_query(yql)
# data exists
if tmpData is not None and "channel" in tmpData:
self._data = tmpData["ch... | python | def updateWeather(self):
"""Fetch weather data from Yahoo! True if success."""
yql = _YQL_WEATHER.format(self._woeid, self._unit)
# send request
tmpData = _yql_query(yql)
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SUNCAT-Center/CatHub | cathub/ase_tools/__init__.py | get_energies | def get_energies(atoms_list):
""" Potential energy for a list of atoms objects"""
if len(atoms_list) == 1:
return atoms_list[0].get_potential_energy()
elif len(atoms_list) > 1:
energies = []
for atoms in atoms_list:
energies.append(atoms.get_potential_energy())
re... | python | def get_energies(atoms_list):
""" Potential energy for a list of atoms objects"""
if len(atoms_list) == 1:
return atoms_list[0].get_potential_energy()
elif len(atoms_list) > 1:
energies = []
for atoms in atoms_list:
energies.append(atoms.get_potential_energy())
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SUNCAT-Center/CatHub | cathub/ase_tools/__init__.py | check_in_ase | def check_in_ase(atoms, ase_db, energy=None):
"""Check if entry is allready in ASE db"""
db_ase = ase.db.connect(ase_db)
if energy is None:
energy = atoms.get_potential_energy()
formula = get_chemical_formula(atoms)
rows = db_ase.select(energy=energy)
n = 0
ids = []
for row in r... | python | def check_in_ase(atoms, ase_db, energy=None):
"""Check if entry is allready in ASE db"""
db_ase = ase.db.connect(ase_db)
if energy is None:
energy = atoms.get_potential_energy()
formula = get_chemical_formula(atoms)
rows = db_ase.select(energy=energy)
n = 0
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pylp/pylp | pylp/lib/tasks.py | task | def task(name, deps = None, fn = None):
"""Define a new task."""
if callable(deps):
fn = deps
deps = None
if not deps and not fn:
logger.log(logger.red("The task '%s' is empty" % name))
else:
tasks[name] = [fn, deps] | python | def task(name, deps = None, fn = None):
"""Define a new task."""
if callable(deps):
fn = deps
deps = None
if not deps and not fn:
logger.log(logger.red("The task '%s' is empty" % name))
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guaix-ucm/numina | numina/modeling/sumofgauss.py | sum_of_gaussian_factory | def sum_of_gaussian_factory(N):
"""Return a model of the sum of N Gaussians and a constant background."""
name = "SumNGauss%d" % N
attr = {}
# parameters
for i in range(N):
key = "amplitude_%d" % i
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key = "center_%d" % i
attr[key] = Paramet... | python | def sum_of_gaussian_factory(N):
"""Return a model of the sum of N Gaussians and a constant background."""
name = "SumNGauss%d" % N
attr = {}
# parameters
for i in range(N):
key = "amplitude_%d" % i
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PierreRust/apigpio | apigpio/utils.py | Debounce | def Debounce(threshold=100):
"""
Simple debouncing decorator for apigpio callbacks.
Example:
`@Debouncer()
def my_cb(gpio, level, tick)
print('gpio cb: {} {} {}'.format(gpio, level, tick))
`
The threshold can be given to the decorator as an argument (in millisec).
This decor... | python | def Debounce(threshold=100):
"""
Simple debouncing decorator for apigpio callbacks.
Example:
`@Debouncer()
def my_cb(gpio, level, tick)
print('gpio cb: {} {} {}'.format(gpio, level, tick))
`
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morepath/more.jwtauth | more/jwtauth/refresh.py | verify_refresh_request | def verify_refresh_request(request):
"""
Wrapper around JWTIdentityPolicy.verify_refresh which verify
if the request to refresh the token is valid.
If valid it returns the userid which can be used to create to
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"""
Wrapper around JWTIdentityPolicy.verify_refresh which verify
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guaix-ucm/numina | numina/array/peaks/detrend.py | detrend | def detrend(arr, x=None, deg=5, tol=1e-3, maxloop=10):
"""Compute a baseline trend of a signal"""
xx = numpy.arange(len(arr)) if x is None else x
base = arr.copy()
trend = base
pol = numpy.ones((deg + 1,))
for _ in range(maxloop):
pol_new = numpy.polyfit(xx, base, deg)
pol_norm ... | python | def detrend(arr, x=None, deg=5, tol=1e-3, maxloop=10):
"""Compute a baseline trend of a signal"""
xx = numpy.arange(len(arr)) if x is None else x
base = arr.copy()
trend = base
pol = numpy.ones((deg + 1,))
for _ in range(maxloop):
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arkottke/pysra | pysra/motion.py | TimeSeriesMotion.calc_osc_accels | def calc_osc_accels(self, osc_freqs, osc_damping=0.05, tf=None):
"""Compute the pseudo-acceleration spectral response of an oscillator
with a specific frequency and damping.
Parameters
----------
osc_freq : float
Frequency of the oscillator (Hz).
osc_damping ... | python | def calc_osc_accels(self, osc_freqs, osc_damping=0.05, tf=None):
"""Compute the pseudo-acceleration spectral response of an oscillator
with a specific frequency and damping.
Parameters
----------
osc_freq : float
Frequency of the oscillator (Hz).
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arkottke/pysra | pysra/motion.py | TimeSeriesMotion._calc_fourier_spectrum | def _calc_fourier_spectrum(self, fa_length=None):
"""Compute the Fourier Amplitude Spectrum of the time series."""
if fa_length is None:
# Use the next power of 2 for the length
n = 1
while n < self.accels.size:
n <<= 1
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arkottke/pysra | pysra/motion.py | TimeSeriesMotion._calc_sdof_tf | def _calc_sdof_tf(self, osc_freq, damping=0.05):
"""Compute the transfer function for a single-degree-of-freedom
oscillator.
The transfer function computes the pseudo-spectral acceleration.
Parameters
----------
osc_freq : float
natural frequency of the osci... | python | def _calc_sdof_tf(self, osc_freq, damping=0.05):
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arkottke/pysra | pysra/motion.py | TimeSeriesMotion.load_at2_file | def load_at2_file(cls, filename):
"""Read an AT2 formatted time series.
Parameters
----------
filename: str
Filename to open.
"""
with open(filename) as fp:
next(fp)
description = next(fp).strip()
next(fp)
part... | python | def load_at2_file(cls, filename):
"""Read an AT2 formatted time series.
Parameters
----------
filename: str
Filename to open.
"""
with open(filename) as fp:
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arkottke/pysra | pysra/motion.py | TimeSeriesMotion.load_smc_file | def load_smc_file(cls, filename):
"""Read an SMC formatted time series.
Format of the time series is provided by:
https://escweb.wr.usgs.gov/nsmp-data/smcfmt.html
Parameters
----------
filename: str
Filename to open.
"""
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"""Read an SMC formatted time series.
Format of the time series is provided by:
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filename: str
Filename to open.
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SUNCAT-Center/CatHub | cathub/classification.py | SiteClassification.get_info | def get_info(self):
"""Return surface reconstruction as well as primary and
secondary adsorption site labels"""
reconstructed = self.is_reconstructed()
site, site_type = self.get_site()
return reconstructed, site, site_type | python | def get_info(self):
"""Return surface reconstruction as well as primary and
secondary adsorption site labels"""
reconstructed = self.is_reconstructed()
site, site_type = self.get_site()
return reconstructed, site, site_type | [
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SUNCAT-Center/CatHub | cathub/classification.py | SiteClassification.check_dissociated | def check_dissociated(self, cutoff=1.2):
"""Check if adsorbate dissociates"""
dissociated = False
if not len(self.B) > self.nslab + 1: # only one adsorbate
return dissociated
adsatoms = [atom for atom in self.B[self.nslab:]]
ads0, ads1 = set(atom.symbol for atom in ... | python | def check_dissociated(self, cutoff=1.2):
"""Check if adsorbate dissociates"""
dissociated = False
if not len(self.B) > self.nslab + 1: # only one adsorbate
return dissociated
adsatoms = [atom for atom in self.B[self.nslab:]]
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SUNCAT-Center/CatHub | cathub/classification.py | SiteClassification.is_reconstructed | def is_reconstructed(self, xy_cutoff=0.3, z_cutoff=0.4):
"""Compare initial and final slab configuration
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xy_cutoff: Allowed xy-movement is determined from
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xy_cutoff * np.mean(cradi... | python | def is_reconstructed(self, xy_cutoff=0.3, z_cutoff=0.4):
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SUNCAT-Center/CatHub | cathub/classification.py | SiteClassification.get_under_bridge | def get_under_bridge(self):
"""Return element closest to the adsorbate in the subsurface layer"""
C0 = self.B[-1:] * (3, 3, 1)
ads_pos = C0.positions[4]
C = self.get_subsurface_layer() * (3, 3, 1)
dis = self.B.cell[0][0] * 2
ret = None
for ele in C:
... | python | def get_under_bridge(self):
"""Return element closest to the adsorbate in the subsurface layer"""
C0 = self.B[-1:] * (3, 3, 1)
ads_pos = C0.positions[4]
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SUNCAT-Center/CatHub | cathub/classification.py | SiteClassification.get_under_hollow | def get_under_hollow(self):
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C0 = self.B[-1:] * (3, 3, 1)
ads_pos = C0.positions[4]
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guaix-ucm/numina | numina/array/distortion.py | fmap | def fmap(order, aij, bij, x, y):
"""Evaluate the 2D polynomial transformation.
u = sum[i=0:order]( sum[j=0:j]( a_ij * x**(i - j) * y**j ))
v = sum[i=0:order]( sum[j=0:j]( b_ij * x**(i - j) * y**j ))
Parameters
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order : int
Order of the polynomial transformation.
aij : num... | python | def fmap(order, aij, bij, x, y):
"""Evaluate the 2D polynomial transformation.
u = sum[i=0:order]( sum[j=0:j]( a_ij * x**(i - j) * y**j ))
v = sum[i=0:order]( sum[j=0:j]( b_ij * x**(i - j) * y**j ))
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Order of the polynomial transformation.
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guaix-ucm/numina | numina/array/distortion.py | ncoef_fmap | def ncoef_fmap(order):
"""Expected number of coefficients in a 2D transformation of a given order.
Parameters
----------
order : int
Order of the 2D polynomial transformation.
Returns
-------
ncoef : int
Expected number of coefficients.
"""
ncoef = 0
for i in ... | python | def ncoef_fmap(order):
"""Expected number of coefficients in a 2D transformation of a given order.
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order : int
Order of the 2D polynomial transformation.
Returns
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ncoef : int
Expected number of coefficients.
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guaix-ucm/numina | numina/array/distortion.py | order_fmap | def order_fmap(ncoef):
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Parameters
----------
ncoef : int
Number of coefficients.
Returns
-------
order : int
Order corresponding to the provided number of coefficients.
"""
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order = 1... | python | def order_fmap(ncoef):
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Number of coefficients.
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order : int
Order corresponding to the provided number of coefficients.
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kyzima-spb/flask-pony | flask_pony/views.py | BaseView.get_template_name | def get_template_name(self):
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Returns the name of the template.
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Example:
>>> class MyEntityAction(BaseView): pass
>>> view = MyEntityAction()
... | python | def get_template_name(self):
"""
Returns the name of the template.
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pylp/pylp | pylp/lib/stream.py | Stream.append_file | def append_file(self, file):
"""Append a new file in the stream."""
self.files.append(file)
if self.transformer:
future = asyncio.ensure_future(self.transformer.transform(file))
future.add_done_callback(self.handle_transform) | python | def append_file(self, file):
"""Append a new file in the stream."""
self.files.append(file)
if self.transformer:
future = asyncio.ensure_future(self.transformer.transform(file))
future.add_done_callback(self.handle_transform) | [
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pylp/pylp | pylp/lib/stream.py | Stream.flush_if_ended | def flush_if_ended(self):
"""Call 'flush' function if all files have been transformed."""
if self.ended and self.next and len(self.files) == self.transformed:
future = asyncio.ensure_future(self.transformer.flush())
future.add_done_callback(lambda x: self.next.end_of_stream()) | python | def flush_if_ended(self):
"""Call 'flush' function if all files have been transformed."""
if self.ended and self.next and len(self.files) == self.transformed:
future = asyncio.ensure_future(self.transformer.flush())
future.add_done_callback(lambda x: self.next.end_of_stream()) | [
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pylp/pylp | pylp/lib/stream.py | Stream.handle_transform | def handle_transform(self, task):
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self.transformed += 1
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if file:
self.next.append_file(file)
self.flush_if_ended() | python | def handle_transform(self, task):
"""Handle a 'transform' callback."""
self.transformed += 1
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pylp/pylp | pylp/lib/stream.py | Stream.pipe | def pipe(self, transformer):
"""Pipe this stream to another."""
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"""Pipe this stream to another."""
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self.transformer = transformer
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pylp/pylp | pylp/utils/pipes.py | pipes | def pipes(stream, *transformers):
"""Pipe several transformers end to end."""
for transformer in transformers:
stream = stream.pipe(transformer)
return stream | python | def pipes(stream, *transformers):
"""Pipe several transformers end to end."""
for transformer in transformers:
stream = stream.pipe(transformer)
return stream | [
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guaix-ucm/numina | numina/core/dataholders.py | Parameter.convert | def convert(self, val):
"""Convert input values to type values."""
pre = super(Parameter, self).convert(val)
if self.custom_validator is not None:
post = self.custom_validator(pre)
else:
post = pre
return post | python | def convert(self, val):
"""Convert input values to type values."""
pre = super(Parameter, self).convert(val)
if self.custom_validator is not None:
post = self.custom_validator(pre)
else:
post = pre
return post | [
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guaix-ucm/numina | numina/core/dataholders.py | Parameter.validate | def validate(self, val):
"""Validate values according to the requirement"""
if self.validation:
self.type.validate(val)
if self.custom_validator is not None:
self.custom_validator(val)
return True | python | def validate(self, val):
"""Validate values according to the requirement"""
if self.validation:
self.type.validate(val)
if self.custom_validator is not None:
self.custom_validator(val)
return True | [
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kyzima-spb/flask-pony | flask_pony/decorators.py | route | def route(obj, rule, *args, **kwargs):
"""Decorator for the View classes."""
def decorator(cls):
endpoint = kwargs.get('endpoint', camel_to_snake(cls.__name__))
kwargs['view_func'] = cls.as_view(endpoint)
obj.add_url_rule(rule, *args, **kwargs)
return cls
return decorator | python | def route(obj, rule, *args, **kwargs):
"""Decorator for the View classes."""
def decorator(cls):
endpoint = kwargs.get('endpoint', camel_to_snake(cls.__name__))
kwargs['view_func'] = cls.as_view(endpoint)
obj.add_url_rule(rule, *args, **kwargs)
return cls
return decorator | [
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arkottke/pysra | pysra/propagation.py | QuarterWaveLenCalculator.fit | def fit(self,
target_type,
target,
adjust_thickness=False,
adjust_site_atten=False,
adjust_source_vel=False):
"""
Fit to a target crustal amplification or site term.
The fitting process adjusts the velocity, site attenuation, and layer... | python | def fit(self,
target_type,
target,
adjust_thickness=False,
adjust_site_atten=False,
adjust_source_vel=False):
"""
Fit to a target crustal amplification or site term.
The fitting process adjusts the velocity, site attenuation, and layer... | [
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arkottke/pysra | pysra/propagation.py | LinearElasticCalculator.wave_at_location | def wave_at_location(self, l):
"""Compute the wave field at specific location.
Parameters
----------
l : site.Location
:class:`site.Location` of the input
Returns
-------
`np.ndarray`
Amplitude and phase of waves
"""
cterm... | python | def wave_at_location(self, l):
"""Compute the wave field at specific location.
Parameters
----------
l : site.Location
:class:`site.Location` of the input
Returns
-------
`np.ndarray`
Amplitude and phase of waves
"""
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arkottke/pysra | pysra/propagation.py | LinearElasticCalculator.calc_accel_tf | def calc_accel_tf(self, lin, lout):
"""Compute the acceleration transfer function.
Parameters
----------
lin : :class:`~site.Location`
Location of input
lout : :class:`~site.Location`
Location of output. Note that this would typically be midheight
... | python | def calc_accel_tf(self, lin, lout):
"""Compute the acceleration transfer function.
Parameters
----------
lin : :class:`~site.Location`
Location of input
lout : :class:`~site.Location`
Location of output. Note that this would typically be midheight
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Location of input
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Location of output. Note that this would typically be midheight
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