Generalist embedding models are better at short-context clinical semantic search than specialized embedding models
Paper • 2401.01943 • Published • 6
full_code stringlengths 9 19 | chapter stringclasses 23
values | chapter_desc stringclasses 23
values | block_code stringclasses 305
values | block_desc stringclasses 313
values | icd_code stringlengths 3 7 | who_desc stringlengths 4 251 | valid_clinical_use stringclasses 4
values | embedding_model stringclasses 1
value | embedded_text stringlengths 11 258 | embedded_text_long stringlengths 76 479 | embedding sequencelengths 384 384 | embedding_long sequencelengths 384 384 |
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I.A00-A09.A00 | I | Certain infectious and parasitic diseases (A00-B99) | A00-A09 | Intestinal infectious diseases | A00 | Cholera | N | intfloat/e5-small-v2 | query: Cholera | query: I Certain infectious and parasitic diseases (A00-B99) A00-A09 Intestinal infectious diseases A00 Cholera | [
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I.A00-A09.A00.0 | I | Certain infectious and parasitic diseases (A00-B99) | A00-A09 | Intestinal infectious diseases | A00.0 | Cholera due to Vibrio cholerae 01, biovar cholerae | Y | intfloat/e5-small-v2 | query: Cholera due to Vibrio cholerae 01, biovar cholerae | query: I Certain infectious and parasitic diseases (A00-B99) A00-A09 Intestinal infectious diseases A00.0 Cholera due to Vibrio cholerae 01, biovar cholerae | [
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I.A00-A09.A00.1 | I | Certain infectious and parasitic diseases (A00-B99) | A00-A09 | Intestinal infectious diseases | A00.1 | Cholera due to Vibrio cholerae 01, biovar eltor | Y | intfloat/e5-small-v2 | query: Cholera due to Vibrio cholerae 01, biovar eltor | query: I Certain infectious and parasitic diseases (A00-B99) A00-A09 Intestinal infectious diseases A00.1 Cholera due to Vibrio cholerae 01, biovar eltor | [
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I.A00-A09.A00.9 | I | Certain infectious and parasitic diseases (A00-B99) | A00-A09 | Intestinal infectious diseases | A00.9 | Cholera, unspecified | Y | intfloat/e5-small-v2 | query: Cholera, unspecified | query: I Certain infectious and parasitic diseases (A00-B99) A00-A09 Intestinal infectious diseases A00.9 Cholera, unspecified | [
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I.A00-A09.A01.0 | I | Certain infectious and parasitic diseases (A00-B99) | A00-A09 | Intestinal infectious diseases | A01.0 | Typhoid fever | Y | intfloat/e5-small-v2 | query: Typhoid fever | query: I Certain infectious and parasitic diseases (A00-B99) A00-A09 Intestinal infectious diseases A01.0 Typhoid fever | [
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I.A00-A09.A01.1 | I | Certain infectious and parasitic diseases (A00-B99) | A00-A09 | Intestinal infectious diseases | A01.1 | Paratyphoid fever A | Y | intfloat/e5-small-v2 | query: Paratyphoid fever A | query: I Certain infectious and parasitic diseases (A00-B99) A00-A09 Intestinal infectious diseases A01.1 Paratyphoid fever A | [
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I.A00-A09.A01.2 | I | Certain infectious and parasitic diseases (A00-B99) | A00-A09 | Intestinal infectious diseases | A01.2 | Paratyphoid fever B | Y | intfloat/e5-small-v2 | query: Paratyphoid fever B | query: I Certain infectious and parasitic diseases (A00-B99) A00-A09 Intestinal infectious diseases A01.2 Paratyphoid fever B | [
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I.A00-A09.A01.3 | I | Certain infectious and parasitic diseases (A00-B99) | A00-A09 | Intestinal infectious diseases | A01.3 | Paratyphoid fever C | Y | intfloat/e5-small-v2 | query: Paratyphoid fever C | query: I Certain infectious and parasitic diseases (A00-B99) A00-A09 Intestinal infectious diseases A01.3 Paratyphoid fever C | [
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I.A00-A09.A01.4 | I | Certain infectious and parasitic diseases (A00-B99) | A00-A09 | Intestinal infectious diseases | A01.4 | Paratyphoid fever, unspecified | Y | intfloat/e5-small-v2 | query: Paratyphoid fever, unspecified | query: I Certain infectious and parasitic diseases (A00-B99) A00-A09 Intestinal infectious diseases A01.4 Paratyphoid fever, unspecified | [
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I.A00-A09.A02 | I | Certain infectious and parasitic diseases (A00-B99) | A00-A09 | Intestinal infectious diseases | A02 | Other salmonella infections | N | intfloat/e5-small-v2 | query: Other salmonella infections | query: I Certain infectious and parasitic diseases (A00-B99) A00-A09 Intestinal infectious diseases A02 Other salmonella infections | [
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End of preview. Expand in Data Studio
Embeddings of icd10cm-order-2025.txt sourced from cdc.gov,
using intfloat/e5_small_v2, a solid performer for its size on ICD10CM, see https://arxiv.org/abs/2401.01943.
Input labels are prefixed with query: per model guidance.
- code: The ICD10-CM code
- level: the level of the code; 0 for A01, 1 for A01.0, 2 for A01.00, etc.
- parent_code: parent ICD10-CM code; "None" for level-0 codes.
- valid: whether the code is valid.
- embedded_text: the embedded text (the label prefixed with
query:) - embedding: comma-separated vector
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