mRNABench
Collection
Collection of datasets re-hosted for mRNABench: https://github.com/morrislab/mRNABench • 13 items • Updated • 3
Datasets:
transcript_id string | gene string | chromosome string | sequence string | cds list | splice list | target float64 |
|---|---|---|---|---|---|---|
ENSMUST00000000001.5 | Gnai3 | 3 | CACACATCCGGTTCTTCCGGGAGCTAGGGGAGCTGACGGAGAAGGCCACCGCCCAGCAGAAGACCCGTCTCCGCCGGTGTGTGGCGATTCCCGCGGTGTGTGTGAGTGAGCCCGGGCCCGGTCCCCTCTCCCGCCGCCGCCATGGGCTGCACGTTGAGCGCCGAGGACAAGGCGGCGGTGGAGCGGAGCAAGATGATCGACCGCAACTTGCGGGAGGACGGGGAGAAAGCGGCCAAAGAAGTGAAGCTGCTGCTGCTCGGCGCTGGAGAATCTGGTAAAAGTACCATCGTGAAACAGATGAAAATCATTCATGAGGACGG... | [
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ENSMUST00000000028.14 | Cdc45 | 16 | TGGAAACACATTCAAATAATGTGTGACTGAATTTACTTTATGTCTAAGAGTATATTGTTTTCTAAGTATGCCAGGGTCAGATAATAGACCTTCCTTCCCGAAGTAAAGATGTCTGCCAAACATAGGTGGTTTTGGGTGACTGGACGTTAGCGTCAACACCGGCAACAAGGAACCAATCAGAAAGGAGGAAAGGCTAAGAATTATTGGCTGCTGGCGTGGACCAATCAGAAGAGCTGTGATTTGGCGGGAGTCTTGACGACCTCCGGGGCTGTCCGTGTCTCAGCGCCAGTTCTAGGTATCCGCCGCTGTGGCTATGTTCG... | [
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ENSMUST00000103015.4 | Narf | 11 | AGGCGGCGGTGTTCCAGTCTTCCTTACTCCTCACAGCTTAGGCGCGTCGGCCTCCTGCCAGTCCCACTCCAGATGAAGTGTGAGCACTGCACACGAAAGGAATGTAGTAAAAAATCAAAAACTGATGACCAGGAGAATGTGTCCAGTGATGGGGCCCAGCCAAGCGATGGGGCCAGCCCAGCCAAGGAGAGTGAAGAGAAGGGAGAGTTCCATAAATTGGCTGATGCAAAAATATTTCTGAGTGACTGCCTGGCATGTGACAGCTGTGTGACTGTGGAGGAAGGTGTCCAGCTTTCTCAGCAGAGTGCCAAGGACTTCCT... | [
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ENSMUST00000000058.7 | Cav2 | 6 | GGGGTTCGGCCAGCCAAGGCTGGGAGCGGGAACCGGCAGCGGGAAGCGGCCGCCGCCCGGGCAGCCCGAGGCTAGGCAGGGCGAAGCCAGGCGGGGCGGGGCTGAGCGCCACGGGAAGGGGAGGCAGGGCTGCCTAGGGACCGAACGACCGAGCCACTCTTGCAACGCCAGCCACGATGGGGCTGGAGACCGAGAAGGCCGATGTGCAGCTCTTCATGGCCGATGACGCCTACAGCCACCACAGTGGCGTTGACTACGCAGATCCTGAGAAGTATGTTGACTCGAGTCACGACCGGGATCCTCACCAGCTCAACTCTCAT... | [
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ENSMUST00000000080.8 | Klf6 | 13 | GAGGGGGGAGGCTGGCAGCGGAGCTTTGAATAGGGAAGTTTTGCAGGGGTTACGCTTGCAGTCAGTCCGCTGTTTGCAAATATTGCGTGGGCTCGGCGCGCTGCGGGCTGCGGGAGGGTCCGGACCCGGCGTCCGATTGCAGCGCCATCCAGTTTGCATGAAACTTTCACCTGCGCTCCCGGGAACAGTTTCTGCTCGGACTCCTGATCGTTCACCTCCCTGTTTTCCCGACAGCGAGGACTGTCTTTTCCAACCCGACATGGATGTGCTCCCAATGTGTAGCATCTTCCAGGAACTACAGATTGTGCACGAAACGGGCT... | [
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ENSMUST00000000087.13 | Scmh1 | 4 | GCCCCCCGCCTCCCGCCGCCGCCTCAGCCGAGCCGCTCTCCAGAGCCGTCGCCCGCCCCTGCCGGCGTCCTCGCTCGCTCCCTGCGCAGCGGAAACATGGCGGCTGGATGGGAGTGAGCCGCCCGCGCCCCGCGCCGCTGTCGCCCTCAGATGGAGAGATTAAATCACAGAGAAACTAACTTGTCAGAGGTCAGAGCAAGGTGTAGGTGGATCCAGGAATAAGTCTCAAGCTTCATCACTCCTTGCTTAGTTTTAGGCCATTGACTATGCAGCCTAGTGACTGGAATGATGTGAAAAAACCTAAGTATGGTCACTTGTCA... | [
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ENSMUST00000000090.8 | Cox5a | 9 | CTCACACCGGCTTCTCGTCAGCCTCAGCCAGTGCGCTGTGGTCGCCGTCATGCTCGCCGCTGCCCTCCGTCGCTGTACCGCAGCCGCGGCTGCCCGAGGCCTCCTGCACCCCGCCTCGGCTCCCAGCCCCGCCGCCGCTGTCTGTTCCATTCGCTGCTATTCTCATGGGTCACACGAGACAGATGAGGAGTTTGATGCTCGCTGGGTGACATATTTCAACAAGCCAGACATTGATGCCTGGGAATTGCGTAAAGGGATGAATACACTTGTTGGCTATGATCTGGTTCCTGAGCCCAAAATCATTGATGCTGCATTGCGAG... | [
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ENSMUST00000000122.7 | Ngfr | 11 | ATTGCCTTCACCCAGCTGCTCCCGCCCGCTAGCAGCCAGAGCGAGTGGAGCCTCCGCCAGCTCCGGCGGGCAGCGGGCGCTGGAGCGCAGCGCAGCGCAGCTCAGCTCAGCGCGCAGCACCATCGGTCCGCAGAGCGGACTGAGCTAGAAGCTGAGCGCTGTCGCCGGAGGCGAGCAATGAGGAGGGCAGGTGCTGCCTGCAGCGCCATGGACCGGCTGCGCCTGCTGCTGCTGCTGCTGCTGCTTCTAGGGGTGTCCTTTGGAGGTGCCAAGGAGACATGTTCCACAGGCATGTACACCCACAGTGGAGAGTGCTGCAA... | [
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ENSMUST00000000129.14 | Fer | 17 | GTGCTGACTAGCAGGCTCACGTGCACAGTGTGGAGGATAAGCTATATCTTACAAAATGGGATTTGGGAGTGACCTGAAGAACTCACAGGAAGCTGTGTTAAAGTTGCAAGACTGGGAACTACGGTTGCTGGAGACAGTGAAGAAATTTATGGCTCTGAGAATAAAGAGTGATAAAGAATATGCATATACTCTACAGAATCTTTGTAATCAAGTTGATAAAGAAAGCACTGTGCAAGTGAATTATGTCAGCAACGTGTCCAAGTCTTGGCTACTGATGATTCAGCAGACAGAACAGCTTAGTAGGATAATGAAGACACATG... | [
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ENSMUST00000009344.16 | Xpo6 | 7 | GGGCGAGCCGCGGCTACTGGTGGCGCGCAGGGATGCGGAGGGAGCCCGCCGCGAGGACAGAGGTGGCGAGGACAGCAAGGGCCCGCGGGCCTCTCTCCTGAGCCGGCCGCGCCGCCCAGGCCCAGGCAGCCTCTGCCCCTTCAGTCTCGGCTGAGGCCCGTCGCCGCCTCGGGCCGCGGAGGCCGGGGAGTCCCTGCCTGGGCCCGCAGCCTCCCTCTCGGGGGTCGGGCCCAGGCGGGGGGCCTCGTGTAGCCGCCTCTGAACCCCATTTTCTGCTTTTGCGTTTCCCCGGGGTGGGCCGAGGTCTGGATGAATCGCTT... | [
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ENSMUST00000077680.10 | Tfe3 | X | AGTGTGGTCACTTCCTGTGGAGTTTCCCCAGCCCAAGGAGGAGGGGGAAGAGGACGAGAGGGAGGCGAGCGGTCGTTCGGGGTTAGGTTGGGGGGTGTCGGTCCGTTCAGGGCGGGTGATGACTCACGGCCCATCCCATCTTCCCGACGCCGCCCGCCCACGCAGTGCTAGCTCCATGGCTTAACGGAGGAGGCAGCGGCAAACAGGGGGAGGGGGACTCTTATTTTGTTAGGGGGACCGGGCCAAGGCCCGACCGGCCTGGCAGGGCTCGCCCGGAGCCGGGCGTCATGTCTCATGCAGCCGAGCCAGCTCGGGACGCC... | [
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ENSMUST00000052915.14 | Axin2 | 11 | GAGCGCCTCTGTGATTGGCGCGGCGGGATCACTGGCTCCCCGAGCCCGGCCCGGGGGAGTCGGCTGGAGCCGGCTGCGCTTTGATAAGGTCCTGGCAACTCAGTAACAGCCCAAGAACCGGGAAATAAAAATAAGCAGCCGTTCGCGATGGATTTCGGGGCCACCCGGAGGCCGAGGCGTCCGCCTCCCCAAAGGAGAGCTTTGCTGTAAAAGAGAGGAGGCTCACATGAGCCCCTGCTGACTTAAGAGAGACCAAGCCGATTGCTGAGAGGAACTGGAAGAAGAAAAAGGAGGAGGAGGGAAAAAAAGCAAAACAAAAT... | [
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Multitask Translational Efficiency Prediction
Overview
Understanding the rules of translational control in mammalian cells is a fundamental challenge in genomics. This dataset is from a study by Zheng et al. (2025), which created a comprehensive, transcriptome-wide atlas of translation efficiency (TE) measurements across a wide array of human and mouse cell types.
The dataset was generated by uniformly processing and quality-controlling thousands of ribosome profiling and corresponding RNA-sequencing experiments.
Data Source and Attribution
This dataset was generated by Zheng et al. (2025). When using this data, please cite the original work and data repository.
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