id stringlengths 4 9 | queries sequence |
|---|---|
4983 | [
"which characteristic describes the diffusion coefficient of cerebral white matter",
"mri scan cerebral white matter",
"which cerebral area is the largest of the white matter",
"cerebral white matter definition",
"what is the diffusion coefficient of cerebral white matter",
"what is diffusion tensor in ce... |
5836 | [
"which stem cell overproduces autologous hematopoietic suppressive cell",
"what is mdsc in cancer",
"mdsc cells function as apoptotic effectors",
"which of the following is an important factor that drives the development of myelodysplastic syndrome?",
"which is an active chemo inhibitor of mdsc",
"which c... |
7912 | [
"how are bc1 rna transcripts used",
"bc1 gene transcripts",
"what is bc1 rna gene",
"what is the bc1 gene",
"what is bc1 rna",
"what is bc1 for gene",
"what is bc1 rna gene",
"which rna transcript can prime reverse transcription",
"which transcript is found in rodent dna? a. bc1 rna, bc3 rna, ctrna,... |
18670 | [
"what is the significance of the methylome for dna sequence",
"which gene is methylated in bmc",
"methylome analysis",
"what molecule is used in the methylome",
"what is the methylome for human peripheral blood mononuclear cells",
"what is the methylome in pbmcs",
"dna methylome definition",
"which ch... |
19238 | [
"where is mbp gene expressed",
"how is the mbp gene related to other genes",
"what is the name of the transcription unit for the mbp gene",
"where are the exons for myelin basic protein from",
"what is the mbp gene",
"what is the function of the genes in the mbp transcription unit",
"what is mbp in cell... |
33370 | [
"what is the purpose of a20 expression in glioma",
"what is A20 in gscs",
"which glioma stem cells are under expressed",
"what is a20 overexpression in glioma",
"a20 regulation of survival in glioma",
"glioma cell survival",
"how to reduce glioma stem cells from survival",
"what is tnfaip in glioma",
... |
36474 | [
"when is zfn used",
"what type of gene is zfn",
"what genes are targeted by zinc finger nuclease",
"what gene is targeted in hipscs and hESCs",
"how does zinc finger nuclease work in hESC",
"what kind of nuclease is used for gene editing in stem cell cells",
"which gene is targeted by zygoglycans?",
"... |
54440 | [
"which type of model is used to determine the abundance of all serotypes?",
"how to predict amplitude of serotypes microarray",
"what is the probability of combinations of serotypes",
"can serotyping microarray data be used to diagnose infectious diseases",
"what is the bayesian model of serotypes?",
"whi... |
70115 | [
"what is posterior mean deviance",
"pd measurement definition",
"what is the measure of posterior mean deviance",
"what is posterior mean deviance",
"why add pd",
"what is pd",
"is posterior mean deviance in bayesian model",
"define posterior mean deviance in physics",
"what is a posterior pd",
"w... |
70490 | [
"which factor is used to interpret likelihood ratios",
"how do you interpret likelihood ratio",
"what is the likelihood ratio of a blood test",
"what is the likelihood ratio for a diagnostic test",
"how to interpret likelihood ratios",
"what is likelihood ratio used for",
"interpreting probability ratio... |
72159 | [
"what tlr ligand inducible",
"which tlr7 receptor induces fn",
"which trl7 ligand is used for type ii in pdcs",
"is tlr7 inducible",
"how is the tlr7 signaling activated in syphilis",
"what type of tlr molecule induces type i inflammatory response",
"which tlr7 ligand induces ifn production",
"which l... |
79447 | [
"what is the role of endothelium in vascular edema",
"what are vascular responses in adipose tissue",
"define visceral microvascular function",
"what is vasomotor function of fat",
"what is the role of endothelium in the villia",
"is arteriolar function affected by oxidative stress",
"what is the role o... |
87758 | [
"what does cimt measure",
"what is the cimt",
"does abpi correlate with atherosclerosis",
"where is the cimt measurement",
"common carotid media thickness tb",
"where is the carotid media measured",
"what is the correlation between cimt and abpi",
"what is a common carotid intima media thickness?",
... |
92308 | [
"which ctl are responsible for viral replication",
"how are hepatitis c transmitted during pregnancy",
"during pregnancy which mutation is most likely to cause the emergence of more fit viruses?",
"what mutations can cause the replication of a circulating virus in pregnancy?",
"why is hcv replication increa... |
92499 | [
"what is the process of developing hematopoietic stem cells",
"what is the process of making hematopoietic stem cells",
"when do hematopoietic stem cells develop",
"when do hematopoietic stem cells mature?",
"what is the process of developing hscs",
"how do hematopoietic stem cells differ from embryonic s... |
97884 | [
"spondyloarthropathy is a disease of which joint",
"which of the following is a characteristic of an inflammatory joint disorder called Spa?",
"what pathogenesis is spongioarthropathy",
"what is sponsor arthritis",
"what is the sacroiliac joint",
"sacroiliac arthritis definition",
"which of the followin... |
102662 | [
"which organism does genetically modified cotton genomic dna come from?",
"what is cotton genomic dna",
"what is the process for removing dna from cotton",
"cotton genomic dna is used for rflp",
"which genomic technology can be used to identify cotton genomes",
"which reagent is used for rflp and pcr?",
... |
103007 | [
"who is the reference curve for stature and weight?",
"what is the current reference curve for stature and weight",
"when were statistics first published and when were they revised",
"when was the cross sectional stature curve used",
"when were statistics of age and weight",
"when was the lms curve first ... |
104130 | [
"what are gli1+ stem cells in a craniofacial suture?",
"which mscs are found on sutures",
"what is gli1+ cells",
"which stem cell is found in each suture",
"what is gli1+ in craniofacial sutures",
"what cells are found in craniofacial sutures",
"where are gli1+ cells found in craniofacial sutures",
"w... |
106301 | [
"which cells in cardiac heart are derived from glea",
"what type of cell is the cardiac neural crest",
"what are the cardiac neural crest derived cells",
"where is cardiac neural crest",
"do cardiac crest cells differentiate",
"is cardiac neural crest multipotent",
"where are cardiac neural precursors f... |
116792 | [
"what is the role of mtor",
"what is mtor rapamycin",
"why is rapamycin given before kainate",
"which mammalian cell is associated with mtor",
"how does rapamycin prevent epileptogenesis? how is it useful to test mtor?",
"how to induce seizures with rapamycin",
"which pathway of rapamycin is involved in... |
118568 | [
"what is ang1 in sepsis",
"does ang cause lung sepsis",
"which hormone is a regulator of angiopoietin in sepsis chemotherapy",
"does ang affect survival rate",
"which receptor is associated with ang-1 ligand?",
"what is rhang injection",
"which is better ang or control",
"when is ang 1 administered",
... |
120626 | [
"what type of diabetes is caused by obesity",
"causes of obesity diabetes",
"what is insulin resistance in obesity",
"what is type two diabetes and obesity",
"which hormone is released when the pancreas fails to control blood glucose",
"what causes type 2 diabetes",
"what is the insulin resistance that ... |
123859 | [
"which type of cell is responsible for movement of podocytes",
"podocytes are sporadic clusters of _______ cells formed by the movement of",
"what are podocytes",
"podocyte definition in glomerular cells",
"what is podocytes in the parietal cells",
"podocytes are a part of what type of epithelial cells",
... |
140874 | [
"where is ctff binding in chromosome",
"which chromosome regions interact",
"which chromosome has an icr",
"where is ccif binding",
"which region of the maternal chromosome interacts with igf2 promoters",
"why are imprinting regions important genes?",
"where are ctcf inhibitors binding",
"what is icr ... |
143251 | [
"what protein binds to pml",
"what causes PML",
"which two proteins are involved in the de novo assembly of pml nuclear bodies",
"what is the function of the aml nucleosomes",
"how are telomeres extended in pml",
"what is the purpose telomere repeat",
"de novo assembly of telomeres occurs via what pathw... |
152245 | [
"what is the opal stop codon in onnv",
"where is the opal codon in the alphavirus genome?",
"where is the opal stop codon of an onnv virus found",
"what opal is in an onnv",
"which gene codon is the end of an opal virus?",
"what is the role of the opal in o'nyong-nyong's genome?",
"where is the opal sto... |
153744 | [
"what ncrnas are responsible for transcriptional translation of hsur t cells",
"what is the role of microRNAs in transformed cells",
"what is hsur 1",
"how does hsur regulate expression",
"what type of rna are in t cells",
"what is the function of host microrna",
"what is hsur in t cells",
"which rna ... |
159469 | [
"what is htrf",
"which fluorescence technology is widely used in protein kinase screening?",
"what is htrf",
"what is htrf technology",
"what is htrf",
"what is htrf",
"what is tb",
"what is htrf",
"why use heterogeneous time resolved tr assay",
"what is htrf",
"what is a htrf",
"what is htrf"... |
164189 | [
"what forks initiate replication",
"what stimulates the origin firing of dna",
"what suppresses the start of the replication factory?",
"which chromosome inhibits the replication",
"what inhibits replication fork progression?",
"what inhibits replication factories",
"which kinase suppresses origin firin... |
164985 | [
"what is the role of fra-1 in macrophages?",
"which macrophages are stimulated by the macrophage progenitor",
"what is the function of fra1",
"what promotes the formation of m2d macrophages",
"what is the role of fra in macrophage formation?",
"how does the inflammatory factor in macrophages help m2d",
... |
169264 | [
"which sio2 nanoparticles are toxic",
"can the presence of sio2 make a protein toxic",
"are sio2 nanoparticles toxic",
"is sio2 toxic",
"are sio2 nanoparticles toxic",
"is SiO2 cytotoxic",
"which nanoparticles are inert",
"can sio2 be cytotoxic",
"what type of nanoparticle is titanium oxide",
"whi... |
175735 | [
"which process is involved in inferring the histone position of nucleosomes?",
"which of the following is an important function of the nucleosomes of chromatin?",
"why do we use nuchunter",
"what is nucleosome?",
"why do scientists use nucleosomal annotation",
"nucleosome in chromatin",
"how to infer nu... |
188911 | [
"how do dendritic cells form",
"what is the difference between granulocytes, microphages, and dendritic cells",
"which type of colony stimulating factor is most important for generating dendritic cells",
"where do dendritic cells form in blood",
"which of the following bacteria creates dendritic cells",
"... |
195352 | [
"insulin resistance in obesity and diabetes",
"insulin resistance in obesity",
"what is the relationship between insulin resistance and obesity",
"insulin resistance in obesity",
"insulin resistance and obesity",
"which metabolic pathways are associated with diabetes",
"insulin resistance in diabetes",
... |
202259 | [
"how is blood pressure lowering beneficial",
"effects of lowering blood pressure",
"what is the effect of lowering blood pressure in a dialysis patient?",
"effect of lowering blood pressure",
"effect of blood pressure on mortality",
"is blood pressure lower during dialysis",
"what are the benefits of lo... |
207972 | [
"which tnf receptor is used in cell death",
"when is fip 2 released",
"which protein inhibits tnf alpha",
"what is the function of e3-14.7k",
"why is fip-2 inactivated",
"which proteins interact with tnf receptors",
"what is the protein that inhibits the TNF receptor",
"tnf receptor is associated with... |
213017 | [
"what protein is trf2",
"what protein is involved in telomere truncation",
"what type of molecule makes up the telomeres of an apb",
"which of the following proteins is associated with the formation of telomeres?",
"which proteins cause telomere compaction?",
"what is telomere compaction and telomere depl... |
219475 | [
"what type of myeloid cell induces aberrant vasculature in lung",
"why are myeloid cells increased in lung",
"what is the role of myeloid cells and myeloid tissue in the lung",
"what cells make up premetastatic lung",
"what is the function of myeloid cells in the lungs?",
"what type of myeloid cells are p... |
226488 | [
"activin nosal signaling",
"activin nodal",
"what is activin",
"what signaling mechanism regulates the cell cycle?",
"what are the responsibilities of activin noctal signaling in stem cell development",
"what is signaling pathways",
"what is activin/nomal signalling",
"activated nasdal signalling for ... |
236204 | [
"what is rdrp gene",
"which gene is most directly expressed in dsrna?",
"what is the role of rdrp genes in rnai",
"which gene encodes rdrp",
"what genes are required for transcription of RNA",
"which rna polymerase is required for rnai",
"which gene is the catalytic domain for dsrna",
"what is the rol... |
238409 | [
"cyclosporine a induced apoptosis symptoms",
"what mechanism of action would cyclosporine a induce",
"what is the mechanism of renal cell apoptosis",
"csa mechanism of action nephrotoxicity",
"mechanism of apoptosis of renal cells",
"what mechanism is involved in chronic csa nephrotoxicity",
"cyclospori... |
243694 | [
"where do blood stem cells first arise quizlet",
"aortic endothelium emerge",
"when do hsc enter the aorta",
"where do hsc cells emerge from?",
"where would you find hscs",
"where does hscs arise from",
"what organelle is the aortic floor in?",
"where do hscs emerge from",
"where is hsc located",
... |
253672 | [
"h7n9 is transmittable through humans",
"can avian influenza a transmit from person to person",
"what type of flu was transmitted from person to person",
"when is avian flu transmitted",
"how far can h7n9 be transferred",
"how can the virus be transmitted",
"where can humans get avian influenza",
"can... |
263364 | [
"which genes are associated with hepatitis c",
"what is spontaneous clearance for hcv in morocco",
"what is spontaneous clearance of hepatitis c",
"what genotype is affected in hepatitis c patients morocco",
"what is spontaneous clearance of hepatitis c",
"when is spontaneous clearance",
"which gene is ... |
266641 | [
"which blood tr cells are highly suppressive?",
"which t reg cell is suppressive",
"what is the purpose of t reg cells",
"what is t reg cell",
"what is t reg cells",
"what is cd127 in blood work",
"which t reg cells have cd127",
"do t reg cells suppress",
"which t reg cells are highly suppressive",
... |
275294 | [
"which of the following can be used to increase the cutaneous production of vitamin d",
"why is precholecalciferol a common nutrient in humans?",
"which sunlight produces cholecalciferol",
"ozone causes cholecalciferol deficiency",
"what causes cholecalciferol in the skin",
"what is the role of sunlight f... |
279052 | [
"what is genomic imprinting",
"why are genes imprinted in fetal cells",
"what is genetic imprinting in psychology",
"what role does genomic imprinting play in developmental processes?",
"why are mRNA genes important",
"genomic imprinting of genes is important for what?",
"genetic imprinting definition",... |
285794 | [
"is light cycler pcr reliable",
"what test is light cycler",
"does light cycler quantitation work",
"is light cycler used for hepatitis c rna",
"which assay is used to test for hepatitis c",
"what is hcv",
"why is light cycler used",
"what is light cycler dna",
"what is light cycler used for",
"wh... |
293661 | [
"what is arginine metabolism",
"what is arginine metabolism",
"what is arginine deprivation",
"is arginine metabolism triggered by arginase inhibitors?",
"what is arginine metabolism",
"what is the effect of arginine metabolism",
"what is arginine metabolism",
"which protein inhibits argine metabolism... |
301838 | [
"which cell type expresses Rankl",
"what is thymus medulla",
"what is the role of rank in thymic medulla formation?",
"thymic medulla induction",
"what is the role of rank signals in the development of t cells?",
"thymic medulla causes which of the following",
"what is the role of rank signalling",
"h... |
301866 | [
"how long is memory b cell deficiency",
"which is a characteristic of long term immune deficiency? brain stem cell transplant",
"is memory b affected by allogeneic deficiency",
"why are b cells deficiency",
"when do memory b cells normalize",
"how long can a person live with a deficiency in a stem cell sy... |
306006 | [
"what triggers proliferation of t cells",
"does an agonist activate t cells",
"what is the mechanism of action of pmhc peptides?",
"which stimulatory ligand is responsible for t cell activation?",
"what type of cell proliferates with peptide agonists",
"which peptide stimulates proliferating t cells",
"... |
306311 | [
"which neuron regulates glutamate clearance",
"which neuron is associated with astrocytic coverage",
"what role does the glial coverage of neurons play in regulation of synaptic efficacy?",
"regulation of glutamate clearance in neurons",
"regulation of glutamate clearance in neurons",
"which part of the n... |
308862 | [
"what is the duration of androgen suppression",
"does androgen reduction improve survival",
"duration of prostate cancer suppression",
"what is the hazard of androgen suppression",
"what is the hazard of androgen suppression?",
"long term androgen suppression",
"how long does androgen support after canc... |
313394 | [
"where does binaural localization occur",
"why sound localization is better for blind than sighted?",
"which of the following is responsible for the spatial localization of sound when the brain is active?",
"which area of the brain is used for monaural sound localization",
"which lobe activates sound?",
"... |
313403 | [
"which of the following is a predictor of clinical outcome of node positive breast cancer?",
"where are tumor associated macrophages found in cancer",
"what is tam density?",
"what is the density of macrophages in the tumor stroma",
"which cancer cells are associated with the TAM",
"what is tam in cancer"... |
317204 | [
"which of the following is included in the cardiac dishevelled 3 pathway?",
"why is dvl3 a dysfunctional gene",
"what is the significance of the dvl3 gene in development",
"where is dvl3 found",
"what is the function of dvl3",
"what is the function of dvl",
"what is the function of dvl2",
"what is the... |
323030 | [
"which molecule regulate the function of all cell apical and basal axis cells",
"what is the role of adherens junctions",
"what is the role of adhesions junctions in a cell",
"what is the main role of the adherens junction",
"what is the role of adhesions junctions",
"why is e cadherin important",
"what... |
323335 | [
"how long is the period of asystole",
"how long does a tilt test take",
"how long is asystole test",
"what is typical asystole length",
"how long does tilt testing work for syncope",
"when should you tilt the head up during syncope",
"when can you test for asystole",
"when was head up tilt test used f... |
327319 | [
"what is zinc used for",
"what is zinc",
"how many molecules are zinc purchasable",
"where does zinc connect",
"what is zinc",
"how many molecules are purchasable for immediate delivery?",
"what is zinc?",
"what is zinc",
"what is zinc",
"who creates zinc",
"what is zinc",
"what is zinc 15 use... |
335029 | [
"what is condensin during fission",
"condensin in chromosome construction",
"condensin structure definition biology",
"what type of chromatin is found in yeast",
"what is the function of the chromatin landscape during mitosis",
"which domains of dna are compacted during mitosis",
"what is the function o... |
341324 | [
"pulmonary tuberculosis recompensation",
"how long does it take to cure tb after smear",
"what drugs treat pulmonary tuberculosis?",
"when does rifampicin recurs in hiv treatment",
"what treatment for tuberculosis",
"who should be treated with a thrice weekly regimen of antitubercular drugs?",
"what is ... |
343052 | [
"is turmeric good for arthritis",
"does curcumin affect arthritis in mice",
"can curcumin inhibit inflammatory response",
"is curcumin an anti-inflammatory",
"does saline curcumin affect arthritis in mice?",
"is curcumin used in mice",
"is curcumin antiinflammatory",
"how does curcumin affect inflamma... |
344240 | [
"what splices myoblasts",
"what is the purpose of isch if splice variant of myh",
"what is the function of igf gene",
"does loss of igf iea or igf ieb affect cells",
"what is the role of igf-ii",
"what is the role of igf-ieb during differentiation",
"which gene splices myoblast cells",
"igf splice var... |
350542 | [
"which antibiotics synergizes with pleurocidin",
"does pleurocidin synergise with antibiotics",
"what kind of antibiotic does pleurocidin contain",
"does pleurocidin synergize with antibiotics",
"what peptide is used to treat enterococcus",
"what organisms can use pleurocidin",
"does pleurocidin have an... |
356218 | [
"how often does a prenatal woman have renal insufficiency",
"what percentage of pregnancy has renal insufficiency",
"causes of renal deficiency in pregnancy",
"renal failure symptoms in pregnancy",
"renal insufficiency pregnancy",
"what is the outcome of renal insufficiency",
"which condition is related... |
364522 | [
"what is hmgb1 and tlr3",
"what is the role of mhgb1 protein in calcific aortic valve disease",
"which tr4 is associated with the calcific aortic valve?",
"what pro-inflammatory factors are stimulated by hmgb1",
"how does hmgb cause osteoblastic calcification",
"what is the role of hmgb1 for calcific aort... |
365896 | [
"what is ribosys",
"what is ribosomal repression",
"what is rna processing in yeast",
"what is ribosys technology",
"which technique allows quantitative quantification of mrna abundance in yeast",
"what is ribosys",
"how does replication of mrna improve transcription",
"what does ribosys measure",
"... |
368506 | [
"what is the conditional allele for ntr",
"which of the following is a conditional allele for neurotrophin receptors",
"what is conditional p75(ntr)",
"which exons encode the neurotrophin receptor",
"ntr mutation gene",
"conditional allele definition",
"is ntr a conditional allele",
"what gene is ntr"... |
371289 | [
"when did the triple staining method come into use",
"what is the triple stain in flow cytometry",
"pna/pyb based analysis",
"what is a triple stain for sperm?",
"what type of acrosome is in a sperm?",
"what is the acrosome integrity of bovine sperm",
"what is pna/sybr",
"what is pna used for",
"wha... |
374902 | [
"which strategy is best for the elimination phase of hiv in a population",
"how long to eliminate hiv by testing for it",
"when does hiv elimination start",
"which strategy would be used to help eliminate hiv",
"what is the purpose of universal hiv testing",
"why use universal testing",
"how long before... |
380526 | [
"what is the genotyping of dggkk",
"snp for hypospadias",
"what is dggkk",
"what genes are associated with hypospadias",
"what is dgkk",
"what kind of snp is dgkk",
"what is the genotyping of hypospadias",
"which type of snp is associated with gmk in humans?",
"what allele represents hypospadias",
... |
381602 | [
"which immune cell is involved in metastatic dissemination of cancer?",
"which neutrophil enhances extravasation",
"which neutrophil inhibits the production of NK cell-mediated tumor clearance?",
"neutrophils are involved in which process in cancer",
"what are neutrophils for?",
"what is the function of n... |
393001 | [
"what enzyme is most effective atp or kapp",
"what is the role of imp in placental enzymes",
"what is soluble 5' nucleotidase",
"what is the specific molecular mass of 5' nucleotidase",
"what is the difference between atp and imp",
"what is the soluble 5'-nucleotidase for humans that is active",
"what i... |
406733 | [
"what chromatin is activated for histone reassembly",
"where do histones from the promoter come from?",
"where histones from promoter chromatin come from",
"how are histones formed in yeast",
"which histones originate from the chromatin fraction?",
"what is pho5 promoter",
"where does histones originate... |
409280 | [
"what is the role of gender in cardiovascular risk management",
"which group of physicians is most effective with cvd recommendations?",
"how many women per year die from cvd",
"what kind of physician is responsible for cvd prevention",
"what is cvd risk level",
"why is the role of gender determining fact... |
410286 | [
"what is the agr method used for inoculation of Arabidopsis",
"what is the agrobacterium tumefaciens vacuum infiltration method?",
"what is the agrobacterium vacuum method",
"what media are grown to induce flowering",
"what is agrobacterium in thaliana thaliana",
"what is the agrobacterium used for in apo... |
418246 | [
"signaling in yeast",
"what is the hub of the signaling network in yeast cells?",
"what is the hub for signaling in yeast",
"what is the signaling hub in yeast",
"signaling and signalling coordination in yeast",
"what is the phospho protein in the yeast stress network?",
"what is the signaling network o... |
427082 | [
"are neural crest cells multipotent in vivo",
"is neural crest cell multipotent",
"which type of cell is multipotent?",
"what is migratory neural crest?",
"what is migratory neural crest",
"what is neural crest",
"what cell group is migratory nev cells",
"which neural crest cells are multipotent",
"... |
427865 | [
"when is the poor responder criteria applied to ivf",
"poor responder criteria",
"esher poor response definition",
"what is the poor response in ivf",
"what is the poor response criteria for ivf",
"which of the following criteria is used to describe an individual's poor response to ivf?",
"what is poor ... |
432261 | [
"what is the method of generation of gene-edited cells",
"which protein is used as a donor template for gene edited rats?",
"which organisms use dna donor template",
"who is a gene encoder in rat cells",
"what is the electroporation process of rat",
"which gene was generated by the electroporation of ssdn... |
435529 | [
"what is heso1",
"what is heso1 mutation",
"heso1 gene",
"what does hen1 suppressor do",
"which gene encodes a terminal nucleotidyl transferase",
"where do hen1 alleles occur",
"hen1 suppressor genes",
"what is hen1 suppressor1?",
"which gene encodes an enzyme that promotes uridylation of RNA",
"h... |
437924 | [
"what is prep medication",
"what is prep treatment",
"what is the role of prep?",
"what is the pre exp",
"what are the advantages of the preexposure prophylaxis pill?",
"what chemo pill is used to prevent hiv",
"does prep work",
"why is prep a good medication",
"what is prep medication",
"what is ... |
439670 | [
"when are studies available for obesity",
"what is the risk factor for gdm",
"which obesity is associated with the risk of gdm?",
"pregnancy bmi and the risk of diabetes",
"what is the risk of gestational diabetes",
"when does bmi increase during pregnancy",
"what is the risk factor for pregnancy diabet... |
456304 | [
"what is socioeconomic inequality in multiple risk behaviour",
"why is multiple risk behaviour so common",
"is multiple risk behaviour more common in sex",
"what is the socioeconomic gap that is increasing over time",
"what is a socioeconomic gap?",
"what type of socioeconomic disparity is multiple risk b... |
457630 | [
"how many people are affected by cataracts",
"age standardized prevalence of cataract",
"dali number",
"global burden for cataracts",
"global cost of cataract",
"when did the global prevalence of cataracts peak?",
"what is dally in medical terms",
"what is the daly number for cataracts",
"what is th... |
461550 | [
"what is the role of dna cleavage",
"what is the role of cas9 in genome editing?",
"why use cas9",
"where is dna cleaved by crisp",
"rna-guided nucleases in csrp",
"what is the purpose of cis rna-guided nucleases",
"what is cas9 gene",
"which type of dna cleaver can be engineered by rna",
"what is t... |
463309 | [
"which cations were used in yeast cell transformation",
"does cscl increase transcription efficiency",
"does yeast take up plasmid dna",
"which yeast cell plasmids are treated with cations",
"what stimulates the uptake of plasmid dna",
"what conditions were necessary for yeast cells to undergo transformat... |
463533 | [
"qvas measures",
"who is affected by eq 5d",
"qqol vs score",
"what is health related quality of life measures",
"what is qqol measured with",
"what are the eq vas scores",
"which factor is an important factor in determining hrqol?",
"which chronic conditions are associated with a negative eq vas",
... |
464511 | [
"which cell type has no autonomous control over the time spent in its solitary state",
"what is the mechanism of cell fate?",
"is bacterial cell chaining memory",
"what is the difference between a solitary cell and a sessile cell",
"what is the role of memories in the decision process for bacillus subtilis"... |
469066 | [
"what regulation is required for pyramidal neurons",
"which neurotransmitter controls radial versus tangential migration?",
"what is the purpose of lpd depletion",
"what is the role of the lpd in the formation of pyramidal neurons",
"what is the role of lamellipodin in pyramidal neurons",
"which ligand is... |
470625 | [
"what is the ink4c inhibitor",
"what is ink4c",
"what is p18 kinase inhibitor",
"why is p18 ik4c",
"what is the target gene for glioblastoma",
"which mutation causes the cdk inhibitor gene",
"what is p18 inhibitor",
"what is the gene for p18(ink4c)",
"is ink4c a gene or gene",
"which gene does p18... |
471735 | [
"what stimulates transcription of soxr",
"what gene is expressed by paraquat",
"what is soxr",
"which enzyme is a transcriptional regulator of e.coli soxs",
"which superoxide stimulates transcription of soxS genes?",
"which oxidative stress regulator is responsible for soxs in e coli.",
"what is the rol... |
471921 | [
"effects of air pollution on cardiovascular system",
"what is the effect of aph on health",
"effects of air pollution on heart disease",
"what is the relationship between air pollution and cardiovascular disease?",
"what is air pollution risk",
"air pollution is a mixture of what",
"what is the differen... |
474325 | [
"helmet vs mask ventilation",
"which is better helmet or mask",
"how to do helmet to vent",
"which ventilation device is most effective in maintaining inspiratory effort and preventing pulmonary failure",
"why use helmet",
"does helmet help with ventilation",
"which type of ventilation has the best gas ... |
485020 | [
"what is case management and how is it used?",
"define case management",
"case management is an integral part of what care",
"does case management include health and social services",
"why do we need case management",
"what does case management mean health care",
"what is the main goal of case managemen... |
493346 | [
"what role does ipl1 li15 play",
"ipl1 sli definition",
"function of ipl1-sli15 in yeast",
"which kinase inhibits replication",
"what is the function of ipl1 sili",
"when do microtubules attach to spindle poles",
"what kinase facilitates mitochondrial bi-orientation",
"what does the ipl1-sli15",
"wh... |
496873 | [
"what is cutaneous vasculitis",
"what is the diagnosis criteria of cutaneous vasculitis?",
"can vasculitis be diagnosed by etiology",
"cutaneous vasculitis is classified as",
"define cutaneous vasculitis",
"cutaneous vasculitis definition",
"what is cutaneous vasculitis",
"what is cutaneous vasculitis... |
502591 | [
"what is acetylation required for e2f",
"when does e2f affect transcription",
"what type of protein acetylates histones",
"acetylation of histones does not occur during mitogenic stimulation",
"what is the role of e2f1",
"which histone is acetylated during s-phase transcription?",
"what is e2f1 acetylat... |
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NFCorpus: 20 generated queries (BEIR Benchmark)
This HF dataset contains the top-20 synthetic queries generated for each passage in the above BEIR benchmark dataset.
- DocT5query model used: BeIR/query-gen-msmarco-t5-base-v1
- id (str): unique document id in NFCorpus in the BEIR benchmark (
corpus.jsonl). - Questions generated: 20
- Code used for generation: evaluate_anserini_docT5query_parallel.py
Below contains the old dataset card for the BEIR benchmark.
Dataset Card for BEIR Benchmark
Dataset Summary
BEIR is a heterogeneous benchmark that has been built from 18 diverse datasets representing 9 information retrieval tasks:
- Fact-checking: FEVER, Climate-FEVER, SciFact
- Question-Answering: NQ, HotpotQA, FiQA-2018
- Bio-Medical IR: TREC-COVID, BioASQ, NFCorpus
- News Retrieval: TREC-NEWS, Robust04
- Argument Retrieval: Touche-2020, ArguAna
- Duplicate Question Retrieval: Quora, CqaDupstack
- Citation-Prediction: SCIDOCS
- Tweet Retrieval: Signal-1M
- Entity Retrieval: DBPedia
All these datasets have been preprocessed and can be used for your experiments.
Supported Tasks and Leaderboards
The dataset supports a leaderboard that evaluates models against task-specific metrics such as F1 or EM, as well as their ability to retrieve supporting information from Wikipedia.
The current best performing models can be found here.
Languages
All tasks are in English (en).
Dataset Structure
All BEIR datasets must contain a corpus, queries and qrels (relevance judgments file). They must be in the following format:
corpusfile: a.jsonlfile (jsonlines) that contains a list of dictionaries, each with three fields_idwith unique document identifier,titlewith document title (optional) andtextwith document paragraph or passage. For example:{"_id": "doc1", "title": "Albert Einstein", "text": "Albert Einstein was a German-born...."}queriesfile: a.jsonlfile (jsonlines) that contains a list of dictionaries, each with two fields_idwith unique query identifier andtextwith query text. For example:{"_id": "q1", "text": "Who developed the mass-energy equivalence formula?"}qrelsfile: a.tsvfile (tab-seperated) that contains three columns, i.e. thequery-id,corpus-idandscorein this order. Keep 1st row as header. For example:q1 doc1 1
Data Instances
A high level example of any beir dataset:
corpus = {
"doc1" : {
"title": "Albert Einstein",
"text": "Albert Einstein was a German-born theoretical physicist. who developed the theory of relativity, \
one of the two pillars of modern physics (alongside quantum mechanics). His work is also known for \
its influence on the philosophy of science. He is best known to the general public for his mass–energy \
equivalence formula E = mc2, which has been dubbed 'the world's most famous equation'. He received the 1921 \
Nobel Prize in Physics 'for his services to theoretical physics, and especially for his discovery of the law \
of the photoelectric effect', a pivotal step in the development of quantum theory."
},
"doc2" : {
"title": "", # Keep title an empty string if not present
"text": "Wheat beer is a top-fermented beer which is brewed with a large proportion of wheat relative to the amount of \
malted barley. The two main varieties are German Weißbier and Belgian witbier; other types include Lambic (made\
with wild yeast), Berliner Weisse (a cloudy, sour beer), and Gose (a sour, salty beer)."
},
}
queries = {
"q1" : "Who developed the mass-energy equivalence formula?",
"q2" : "Which beer is brewed with a large proportion of wheat?"
}
qrels = {
"q1" : {"doc1": 1},
"q2" : {"doc2": 1},
}
Data Fields
Examples from all configurations have the following features:
Corpus
corpus: adictfeature representing the document title and passage text, made up of:_id: astringfeature representing the unique document idtitle: astringfeature, denoting the title of the document.text: astringfeature, denoting the text of the document.
Queries
queries: adictfeature representing the query, made up of:_id: astringfeature representing the unique query idtext: astringfeature, denoting the text of the query.
Qrels
qrels: adictfeature representing the query document relevance judgements, made up of:_id: astringfeature representing the query id_id: astringfeature, denoting the document id.score: aint32feature, denoting the relevance judgement between query and document.
Data Splits
| Dataset | Website | BEIR-Name | Type | Queries | Corpus | Rel D/Q | Down-load | md5 |
|---|---|---|---|---|---|---|---|---|
| MSMARCO | Homepage | msmarco |
traindevtest |
6,980 | 8.84M | 1.1 | Link | 444067daf65d982533ea17ebd59501e4 |
| TREC-COVID | Homepage | trec-covid |
test |
50 | 171K | 493.5 | Link | ce62140cb23feb9becf6270d0d1fe6d1 |
| NFCorpus | Homepage | nfcorpus |
traindevtest |
323 | 3.6K | 38.2 | Link | a89dba18a62ef92f7d323ec890a0d38d |
| BioASQ | Homepage | bioasq |
traintest |
500 | 14.91M | 8.05 | No | How to Reproduce? |
| NQ | Homepage | nq |
traintest |
3,452 | 2.68M | 1.2 | Link | d4d3d2e48787a744b6f6e691ff534307 |
| HotpotQA | Homepage | hotpotqa |
traindevtest |
7,405 | 5.23M | 2.0 | Link | f412724f78b0d91183a0e86805e16114 |
| FiQA-2018 | Homepage | fiqa |
traindevtest |
648 | 57K | 2.6 | Link | 17918ed23cd04fb15047f73e6c3bd9d9 |
| Signal-1M(RT) | Homepage | signal1m |
test |
97 | 2.86M | 19.6 | No | How to Reproduce? |
| TREC-NEWS | Homepage | trec-news |
test |
57 | 595K | 19.6 | No | How to Reproduce? |
| ArguAna | Homepage | arguana |
test |
1,406 | 8.67K | 1.0 | Link | 8ad3e3c2a5867cdced806d6503f29b99 |
| Touche-2020 | Homepage | webis-touche2020 |
test |
49 | 382K | 19.0 | Link | 46f650ba5a527fc69e0a6521c5a23563 |
| CQADupstack | Homepage | cqadupstack |
test |
13,145 | 457K | 1.4 | Link | 4e41456d7df8ee7760a7f866133bda78 |
| Quora | Homepage | quora |
devtest |
10,000 | 523K | 1.6 | Link | 18fb154900ba42a600f84b839c173167 |
| DBPedia | Homepage | dbpedia-entity |
devtest |
400 | 4.63M | 38.2 | Link | c2a39eb420a3164af735795df012ac2c |
| SCIDOCS | Homepage | scidocs |
test |
1,000 | 25K | 4.9 | Link | 38121350fc3a4d2f48850f6aff52e4a9 |
| FEVER | Homepage | fever |
traindevtest |
6,666 | 5.42M | 1.2 | Link | 5a818580227bfb4b35bb6fa46d9b6c03 |
| Climate-FEVER | Homepage | climate-fever |
test |
1,535 | 5.42M | 3.0 | Link | 8b66f0a9126c521bae2bde127b4dc99d |
| SciFact | Homepage | scifact |
traintest |
300 | 5K | 1.1 | Link | 5f7d1de60b170fc8027bb7898e2efca1 |
| Robust04 | Homepage | robust04 |
test |
249 | 528K | 69.9 | No | How to Reproduce? |
Dataset Creation
Curation Rationale
[Needs More Information]
Source Data
Initial Data Collection and Normalization
[Needs More Information]
Who are the source language producers?
[Needs More Information]
Annotations
Annotation process
[Needs More Information]
Who are the annotators?
[Needs More Information]
Personal and Sensitive Information
[Needs More Information]
Considerations for Using the Data
Social Impact of Dataset
[Needs More Information]
Discussion of Biases
[Needs More Information]
Other Known Limitations
[Needs More Information]
Additional Information
Dataset Curators
[Needs More Information]
Licensing Information
[Needs More Information]
Citation Information
Cite as:
@inproceedings{
thakur2021beir,
title={{BEIR}: A Heterogeneous Benchmark for Zero-shot Evaluation of Information Retrieval Models},
author={Nandan Thakur and Nils Reimers and Andreas R{\"u}ckl{\'e} and Abhishek Srivastava and Iryna Gurevych},
booktitle={Thirty-fifth Conference on Neural Information Processing Systems Datasets and Benchmarks Track (Round 2)},
year={2021},
url={https://openreview.net/forum?id=wCu6T5xFjeJ}
}
Contributions
Thanks to @Nthakur20 for adding this dataset.Top-20 generated queries for every passage in NFCorpus
Dataset Card for BEIR Benchmark
Table of Contents
- Dataset Description
- Dataset Structure
- Dataset Creation
- Considerations for Using the Data
- Additional Information
Dataset Description
- Homepage: https://github.com/UKPLab/beir
- Repository: https://github.com/UKPLab/beir
- Paper: https://openreview.net/forum?id=wCu6T5xFjeJ
- Leaderboard: https://docs.google.com/spreadsheets/d/1L8aACyPaXrL8iEelJLGqlMqXKPX2oSP_R10pZoy77Ns
- Point of Contact: nandan.thakur@uwaterloo.ca
Dataset Summary
BEIR is a heterogeneous benchmark that has been built from 18 diverse datasets representing 9 information retrieval tasks:
- Fact-checking: FEVER, Climate-FEVER, SciFact
- Question-Answering: NQ, HotpotQA, FiQA-2018
- Bio-Medical IR: TREC-COVID, BioASQ, NFCorpus
- News Retrieval: TREC-NEWS, Robust04
- Argument Retrieval: Touche-2020, ArguAna
- Duplicate Question Retrieval: Quora, CqaDupstack
- Citation-Prediction: SCIDOCS
- Tweet Retrieval: Signal-1M
- Entity Retrieval: DBPedia
All these datasets have been preprocessed and can be used for your experiments.
Supported Tasks and Leaderboards
The dataset supports a leaderboard that evaluates models against task-specific metrics such as F1 or EM, as well as their ability to retrieve supporting information from Wikipedia.
The current best performing models can be found here.
Languages
All tasks are in English (en).
Dataset Structure
All BEIR datasets must contain a corpus, queries and qrels (relevance judgments file). They must be in the following format:
corpusfile: a.jsonlfile (jsonlines) that contains a list of dictionaries, each with three fields_idwith unique document identifier,titlewith document title (optional) andtextwith document paragraph or passage. For example:{"_id": "doc1", "title": "Albert Einstein", "text": "Albert Einstein was a German-born...."}queriesfile: a.jsonlfile (jsonlines) that contains a list of dictionaries, each with two fields_idwith unique query identifier andtextwith query text. For example:{"_id": "q1", "text": "Who developed the mass-energy equivalence formula?"}qrelsfile: a.tsvfile (tab-seperated) that contains three columns, i.e. thequery-id,corpus-idandscorein this order. Keep 1st row as header. For example:q1 doc1 1
Data Instances
A high level example of any beir dataset:
corpus = {
"doc1" : {
"title": "Albert Einstein",
"text": "Albert Einstein was a German-born theoretical physicist. who developed the theory of relativity, \
one of the two pillars of modern physics (alongside quantum mechanics). His work is also known for \
its influence on the philosophy of science. He is best known to the general public for his mass–energy \
equivalence formula E = mc2, which has been dubbed 'the world's most famous equation'. He received the 1921 \
Nobel Prize in Physics 'for his services to theoretical physics, and especially for his discovery of the law \
of the photoelectric effect', a pivotal step in the development of quantum theory."
},
"doc2" : {
"title": "", # Keep title an empty string if not present
"text": "Wheat beer is a top-fermented beer which is brewed with a large proportion of wheat relative to the amount of \
malted barley. The two main varieties are German Weißbier and Belgian witbier; other types include Lambic (made\
with wild yeast), Berliner Weisse (a cloudy, sour beer), and Gose (a sour, salty beer)."
},
}
queries = {
"q1" : "Who developed the mass-energy equivalence formula?",
"q2" : "Which beer is brewed with a large proportion of wheat?"
}
qrels = {
"q1" : {"doc1": 1},
"q2" : {"doc2": 1},
}
Data Fields
Examples from all configurations have the following features:
Corpus
corpus: adictfeature representing the document title and passage text, made up of:_id: astringfeature representing the unique document idtitle: astringfeature, denoting the title of the document.text: astringfeature, denoting the text of the document.
Queries
queries: adictfeature representing the query, made up of:_id: astringfeature representing the unique query idtext: astringfeature, denoting the text of the query.
Qrels
qrels: adictfeature representing the query document relevance judgements, made up of:_id: astringfeature representing the query id_id: astringfeature, denoting the document id.score: aint32feature, denoting the relevance judgement between query and document.
Data Splits
| Dataset | Website | BEIR-Name | Type | Queries | Corpus | Rel D/Q | Down-load | md5 |
|---|---|---|---|---|---|---|---|---|
| MSMARCO | Homepage | msmarco |
traindevtest |
6,980 | 8.84M | 1.1 | Link | 444067daf65d982533ea17ebd59501e4 |
| TREC-COVID | Homepage | trec-covid |
test |
50 | 171K | 493.5 | Link | ce62140cb23feb9becf6270d0d1fe6d1 |
| NFCorpus | Homepage | nfcorpus |
traindevtest |
323 | 3.6K | 38.2 | Link | a89dba18a62ef92f7d323ec890a0d38d |
| BioASQ | Homepage | bioasq |
traintest |
500 | 14.91M | 8.05 | No | How to Reproduce? |
| NQ | Homepage | nq |
traintest |
3,452 | 2.68M | 1.2 | Link | d4d3d2e48787a744b6f6e691ff534307 |
| HotpotQA | Homepage | hotpotqa |
traindevtest |
7,405 | 5.23M | 2.0 | Link | f412724f78b0d91183a0e86805e16114 |
| FiQA-2018 | Homepage | fiqa |
traindevtest |
648 | 57K | 2.6 | Link | 17918ed23cd04fb15047f73e6c3bd9d9 |
| Signal-1M(RT) | Homepage | signal1m |
test |
97 | 2.86M | 19.6 | No | How to Reproduce? |
| TREC-NEWS | Homepage | trec-news |
test |
57 | 595K | 19.6 | No | How to Reproduce? |
| ArguAna | Homepage | arguana |
test |
1,406 | 8.67K | 1.0 | Link | 8ad3e3c2a5867cdced806d6503f29b99 |
| Touche-2020 | Homepage | webis-touche2020 |
test |
49 | 382K | 19.0 | Link | 46f650ba5a527fc69e0a6521c5a23563 |
| CQADupstack | Homepage | cqadupstack |
test |
13,145 | 457K | 1.4 | Link | 4e41456d7df8ee7760a7f866133bda78 |
| Quora | Homepage | quora |
devtest |
10,000 | 523K | 1.6 | Link | 18fb154900ba42a600f84b839c173167 |
| DBPedia | Homepage | dbpedia-entity |
devtest |
400 | 4.63M | 38.2 | Link | c2a39eb420a3164af735795df012ac2c |
| SCIDOCS | Homepage | scidocs |
test |
1,000 | 25K | 4.9 | Link | 38121350fc3a4d2f48850f6aff52e4a9 |
| FEVER | Homepage | fever |
traindevtest |
6,666 | 5.42M | 1.2 | Link | 5a818580227bfb4b35bb6fa46d9b6c03 |
| Climate-FEVER | Homepage | climate-fever |
test |
1,535 | 5.42M | 3.0 | Link | 8b66f0a9126c521bae2bde127b4dc99d |
| SciFact | Homepage | scifact |
traintest |
300 | 5K | 1.1 | Link | 5f7d1de60b170fc8027bb7898e2efca1 |
| Robust04 | Homepage | robust04 |
test |
249 | 528K | 69.9 | No | How to Reproduce? |
Dataset Creation
Curation Rationale
[Needs More Information]
Source Data
Initial Data Collection and Normalization
[Needs More Information]
Who are the source language producers?
[Needs More Information]
Annotations
Annotation process
[Needs More Information]
Who are the annotators?
[Needs More Information]
Personal and Sensitive Information
[Needs More Information]
Considerations for Using the Data
Social Impact of Dataset
[Needs More Information]
Discussion of Biases
[Needs More Information]
Other Known Limitations
[Needs More Information]
Additional Information
Dataset Curators
[Needs More Information]
Licensing Information
[Needs More Information]
Citation Information
Cite as:
@inproceedings{
thakur2021beir,
title={{BEIR}: A Heterogeneous Benchmark for Zero-shot Evaluation of Information Retrieval Models},
author={Nandan Thakur and Nils Reimers and Andreas R{\"u}ckl{\'e} and Abhishek Srivastava and Iryna Gurevych},
booktitle={Thirty-fifth Conference on Neural Information Processing Systems Datasets and Benchmarks Track (Round 2)},
year={2021},
url={https://openreview.net/forum?id=wCu6T5xFjeJ}
}
Contributions
Thanks to @Nthakur20 for adding this dataset.
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