Update bioclip-2_float16: metadata backfill + UUID dedup

#2
by netzhang - opened
HDR Imageomics Institute org

Changes

Metadata backfill

  • 27.2M observation.org rows recovered: taxonomy from resolved_taxa (2025-12-20), URLs from GBIF data parquets
  • 1.1M EOL unresolved rows recovered: source_dataset and source_id from EOL metadata
  • All taxonomy refreshed against latest resolved_taxa (2025-12-20, all 4 sources)
  • 0 NULL source_dataset remaining (was 28.3M)

UUID fixes

  • 27.2M non-hyphenated UUIDs normalized to hyphenated format
  • 21,078 duplicate UUIDs removed (exact duplicates from embedding pipeline; source images have 0 dups)

Stats

  • Rows: 239,580,103 → 239,559,025 (after dedup)
  • Size: 331 GB → 332 GB
  • Kingdom coverage: 88% → 97%
  • Species coverage: 81% → 90%
  • Validation: 9/9 checks passed
netzhang changed pull request status to closed
netzhang deleted the refs/pr/2 ref

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