PrimateAI-3D
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PrimateAI-3D scores and primate and human constraint are available at the PrimateAI-3D browser: https://primateai3d.basespace.illumina.com/
PrimateAI-3D scores are freely available for download for academic, non-profit research. Please submit the form below to accept the Academic License Agreement. Access will be granted after review of your request.
Purchase of AI scores and models for commercial use is available at AI_licensing@illumina.com and will be delivered as a package through Illumina Connected Analytics software.
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The contents of these files including PrimateAI-3D.hg38.csv.gz and PrimateAI-3D.hg19.txt.gz are the confidential and proprietary information of Illumina and are subject to the terms of the license agreement between you and Illumina, including, without limitation, the restrictions on use of the content set forth therein. ©2023 Illumina, Inc.
The column names of PrimateAI-3D.hg19.txt.gz or PrimateAI-3D.hg38.txt.gz are
- chr : chr of this missense variant on either hg19 or hg38
- pos : base position of this missense variant on either hg19 or hg38
- non_flipped_ref : reference allele
- non_flipped_alt : alternative allele
- gene_name : Ensemble ID of the canonical transcript the variant is located in
- change_position_1based: indicate the amino acid position where the missense variant occur, e.g., "2" means the variant is present at the second amino acid in the protein
- ref_aa : reference amino acid of this missense variant
- alt_aa : alternative amino acid of this missense variant
- score_PAI3D : PrimateAI-3D score of this missense variant
- percentile_PAI3D: the genomewide percentile of PrimateAI-3D score of this missense variant
- refseq: RefSeq ID of the canonical transcript the variant is located in
- prediction: indicate the missense variant is benign or pathogenic according to gene-specific PrimateAI-3D cutoff
Note that PrimateAI-3D.hg19.txt.gz is generated by lifting-over PrimateAI-3D.hg38.txt.gz from hg38 to hg19.
For questions, please contact primad@illumina.com.
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