testbed/TileDB-Inc__TileDB-Py/tiledb/cc/vfs.cc

#include <tiledb/tiledb>
#include <tiledb/tiledb_experimental>

#include <pybind11/functional.h>
#include <pybind11/numpy.h>
#include <pybind11/pybind11.h>
#include <pybind11/pytypes.h>
#include <pybind11/stl.h>

#include "common.h"

namespace libtiledbcpp {

using namespace tiledb;
using namespace tiledbpy::common;
namespace py = pybind11;

void init_vfs(py::module &m) {
  py::class_<VFS>(m, "VFS")
      .def(py::init<const Context &>(), py::keep_alive<1, 2>())
      .def(py::init<const Context &, const Config &>(), py::keep_alive<1, 2>())

      .def_property_readonly("_ctx", &VFS::context)
      .def_property_readonly("_config", &VFS::config)

      .def("_create_bucket", &VFS::create_bucket)
      .def("_remove_bucket", &VFS::remove_bucket)
      .def("_is_bucket", &VFS::is_bucket)
      .def("_empty_bucket", &VFS::empty_bucket)
      .def("_is_empty_bucket", &VFS::is_empty_bucket)

      .def("_create_dir", &VFS::create_dir)
      .def("_is_dir", &VFS::is_dir)
      .def("_remove_dir", &VFS::remove_dir)
      .def("_dir_size", &VFS::dir_size)
      .def("_move_dir", &VFS::move_dir)
      .def("_copy_dir", &VFS::copy_dir)

      .def("_is_file", &VFS::is_file)
      .def("_remove_file", &VFS::remove_file)
      .def("_file_size", &VFS::file_size)
      .def("_move_file", &VFS::move_file)
      .def("_copy_file", &VFS::copy_file)

      .def("_ls", &VFS::ls)
      .def(
          "_ls_recursive",
          // 1. the user provides a callback, the user callback is passed to the
          // C++ function. Return an empty vector.
          // 2. no callback is passed and a default callback is used. The
          // default callback just appends each path gathered. Return the paths.
          [](VFS &vfs, std::string uri, py::object callback) {
            tiledb::Context ctx;
            if (callback.is_none()) {
              std::vector<std::string> paths;
              tiledb::VFSExperimental::ls_recursive(
                  ctx, vfs, uri,
                  [&](const std::string_view path,
                      uint64_t object_size) -> bool {
                    paths.push_back(std::string(path));
                    return true;
                  });
              return paths;
            } else {
              tiledb::VFSExperimental::ls_recursive(
                  ctx, vfs, uri,
                  [&](const std::string_view path,
                      uint64_t object_size) -> bool {
                    return callback(path, object_size).cast<bool>();
                  });
              return std::vector<std::string>();
            }
          })
      .def("_touch", &VFS::touch);
}

class FileHandle {
private:
  Context _ctx;
  tiledb_vfs_fh_t *_fh;

public:
  FileHandle(const Context &ctx, const VFS &vfs, std::string uri,
             tiledb_vfs_mode_t mode)
      : _ctx(ctx) {
    _ctx.handle_error(tiledb_vfs_open(_ctx.ptr().get(), vfs.ptr().get(),
                                      uri.c_str(), mode, &this->_fh));
  }

  void close() {
    _ctx.handle_error(tiledb_vfs_close(_ctx.ptr().get(), this->_fh));
  }

  py::bytes read(uint64_t offset, uint64_t nbytes) {
    py::array data = py::array(py::dtype::of<std::byte>(), nbytes);
    py::buffer_info buffer = data.request();

    _ctx.handle_error(tiledb_vfs_read(_ctx.ptr().get(), this->_fh, offset,
                                      buffer.ptr, nbytes));

    auto np = py::module::import("numpy");
    auto to_bytes = np.attr("ndarray").attr("tobytes");

    return to_bytes(data);
  }

  void write(py::buffer data) {
    py::buffer_info buffer = data.request();
    _ctx.handle_error(tiledb_vfs_write(_ctx.ptr().get(), this->_fh, buffer.ptr,
                                       buffer.shape[0]));
  }

  void flush() {
    _ctx.handle_error(tiledb_vfs_sync(_ctx.ptr().get(), this->_fh));
  }

  bool closed() {
    int32_t is_closed;
    _ctx.handle_error(
        tiledb_vfs_fh_is_closed(_ctx.ptr().get(), this->_fh, &is_closed));
    return is_closed;
  }
};

void init_file_handle(py::module &m) {
  py::class_<FileHandle>(m, "FileHandle")
      .def(py::init<const Context &, const VFS &, std::string,
                    tiledb_vfs_mode_t>(),
           py::keep_alive<1, 2>())

      .def_property_readonly("_closed", &FileHandle::closed)

      .def("_close", &FileHandle::close)
      .def("_read", &FileHandle::read)
      .def("_write", &FileHandle::write)
      .def("_flush", &FileHandle::flush);
}

} // namespace libtiledbcpp