#include #include #include #include #include #include #include #include "common.h" namespace libtiledbcpp { using namespace tiledb; using namespace tiledbpy::common; namespace py = pybind11; void init_vfs(py::module &m) { py::class_(m, "VFS") .def(py::init(), py::keep_alive<1, 2>()) .def(py::init(), py::keep_alive<1, 2>()) .def_property_readonly("_ctx", &VFS::context) .def_property_readonly("_config", &VFS::config) .def("_create_bucket", &VFS::create_bucket) .def("_remove_bucket", &VFS::remove_bucket) .def("_is_bucket", &VFS::is_bucket) .def("_empty_bucket", &VFS::empty_bucket) .def("_is_empty_bucket", &VFS::is_empty_bucket) .def("_create_dir", &VFS::create_dir) .def("_is_dir", &VFS::is_dir) .def("_remove_dir", &VFS::remove_dir) .def("_dir_size", &VFS::dir_size) .def("_move_dir", &VFS::move_dir) .def("_copy_dir", &VFS::copy_dir) .def("_is_file", &VFS::is_file) .def("_remove_file", &VFS::remove_file) .def("_file_size", &VFS::file_size) .def("_move_file", &VFS::move_file) .def("_copy_file", &VFS::copy_file) .def("_ls", &VFS::ls) .def( "_ls_recursive", // 1. the user provides a callback, the user callback is passed to the // C++ function. Return an empty vector. // 2. no callback is passed and a default callback is used. The // default callback just appends each path gathered. Return the paths. [](VFS &vfs, std::string uri, py::object callback) { tiledb::Context ctx; if (callback.is_none()) { std::vector paths; tiledb::VFSExperimental::ls_recursive( ctx, vfs, uri, [&](const std::string_view path, uint64_t object_size) -> bool { paths.push_back(std::string(path)); return true; }); return paths; } else { tiledb::VFSExperimental::ls_recursive( ctx, vfs, uri, [&](const std::string_view path, uint64_t object_size) -> bool { return callback(path, object_size).cast(); }); return std::vector(); } }) .def("_touch", &VFS::touch); } class FileHandle { private: Context _ctx; tiledb_vfs_fh_t *_fh; public: FileHandle(const Context &ctx, const VFS &vfs, std::string uri, tiledb_vfs_mode_t mode) : _ctx(ctx) { _ctx.handle_error(tiledb_vfs_open(_ctx.ptr().get(), vfs.ptr().get(), uri.c_str(), mode, &this->_fh)); } void close() { _ctx.handle_error(tiledb_vfs_close(_ctx.ptr().get(), this->_fh)); } py::bytes read(uint64_t offset, uint64_t nbytes) { py::array data = py::array(py::dtype::of(), nbytes); py::buffer_info buffer = data.request(); _ctx.handle_error(tiledb_vfs_read(_ctx.ptr().get(), this->_fh, offset, buffer.ptr, nbytes)); auto np = py::module::import("numpy"); auto to_bytes = np.attr("ndarray").attr("tobytes"); return to_bytes(data); } void write(py::buffer data) { py::buffer_info buffer = data.request(); _ctx.handle_error(tiledb_vfs_write(_ctx.ptr().get(), this->_fh, buffer.ptr, buffer.shape[0])); } void flush() { _ctx.handle_error(tiledb_vfs_sync(_ctx.ptr().get(), this->_fh)); } bool closed() { int32_t is_closed; _ctx.handle_error( tiledb_vfs_fh_is_closed(_ctx.ptr().get(), this->_fh, &is_closed)); return is_closed; } }; void init_file_handle(py::module &m) { py::class_(m, "FileHandle") .def(py::init(), py::keep_alive<1, 2>()) .def_property_readonly("_closed", &FileHandle::closed) .def("_close", &FileHandle::close) .def("_read", &FileHandle::read) .def("_write", &FileHandle::write) .def("_flush", &FileHandle::flush); } } // namespace libtiledbcpp