| # Available datasets | |
| The full descriptions of the datasets and the studies of origin can be found in the manuscript. Here we provide the links to access the processed datasets. | |
| ## Pretraining data | |
| To download data from CellXGene and build for pretraining, go to the folder [cellxgene](cellxgene) and follow the instructions. | |
| ## Datasets for cell type annotation | |
| - Multiple Sclerosis (M.S.) dataset: [link](https://drive.google.com/drive/folders/1Qd42YNabzyr2pWt9xoY4cVMTAxsNBt4v?usp=sharing) | |
| - Myeloid (Mye.) dataset: [link](https://drive.google.com/drive/folders/1VbpApQufZq8efFGakW3y8QDDpY9MBoDS?usp=drive_link) | |
| - hPancreas dataset: [link](https://drive.google.com/drive/folders/1s9XjcSiPC-FYV3VeHrEa7SeZetrthQVV?usp=drive_link) | |
| ## Datasets for multi-batch integration | |
| - PBMC 10K: [link](https://docs.scvi-tools.org/en/stable/api/reference/scvi.data.pbmc_dataset.html) | |
| - Perirhinal Cortex dataset: [link](https://drive.google.com/file/d/1rDAxDtvWx1GpJaNhlKBi71f8-psUNppE/view?usp=drive_link) | |
| - COVID-19 dataset: [link](https://drive.google.com/file/d/1eD9LbxNJ35YUde3VtdVcjkwm-f4iyJ6x/view?usp=drive_link) | |
| ## Datasets for multi-omics integration | |
| - BMMC dataset: [link](https://drive.google.com/drive/folders/1VRsVugg6vgCq8GG0gGajYsyXfrEtP0jK?usp=sharing) | |
| - 10x Multiome PBMC dataset: [link](https://drive.google.com/drive/folders/163J4Qi7R-awuLiHnWCh-eJD7RPMnb_yK?usp=sharing) | |
| ## Datasets for perturbation prediction | |
| - Adamson dataset: [link](https://dataverse.harvard.edu/api/access/datafile/6154417) | |
| - Norman dataset: [link](https://dataverse.harvard.edu/api/access/datafile/6154020) | |
| ## Datasets for the GRN analysis | |
| - Immune Human dataset [link](https://figshare.com/ndownloader/files/25717328) | |
| ## Datasets for zero-shot integration | |
| - Lung-Kim dataset: [link](https://drive.google.com/file/d/1z_0vWYMhRuRiD1EyhuFtY9ReIR0msWaL/view?usp=sharing) | |
| - COVID-19 dataset: [link](https://drive.google.com/file/d/1eD9LbxNJ35YUde3VtdVcjkwm-f4iyJ6x/view?usp=drive_link) | |
| - Multiple Sclerosis (M.S.) dataset: [link](https://drive.google.com/drive/folders/1Qd42YNabzyr2pWt9xoY4cVMTAxsNBt4v?usp=sharing) | |
| ## Datasets for zero-shot integration | |
| - COVID-19 dataset(splitted) : [link](https://drive.google.com/drive/folders/1jSPoPunGQOmd71vDsK0FS7UvmDhGdhQS?usp=sharing) | |
| - Lung-Kim dataset(splitted): [link](https://drive.google.com/drive/folders/1gbfO7VqxCOkfzgHAih6hO88zFv6pd8wO?usp=sharing) | |