damlab/HIV_BERT
Fill-Mask • Updated • 7
id stringlengths 0 45 | 5LTR stringlengths 0 642 | GagPol stringlengths 0 521 | Vif stringlengths 0 197 | Vpr stringlengths 0 101 | Tat stringlengths 0 108 | Rev stringlengths 0 127 | Vpu stringlengths 0 93 | Env stringlengths 0 899 | Nef stringlengths 0 231 | 3LTR stringlengths 0 671 | Genome stringlengths 0 9.9k |
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B.FR.83.HXB2_LAI_IIIB_BRU.K03455 | -TGGAAGGGCTAATTCACTCCCAACGAAGACAAGATATCCTTGATCTGTGGATCTACCACACACAAGGCTACTTCCCTGATTAGCAGAACTACACACCAGGGCCAGGGATCAGATATCCACTGACCTTTGGATGGTGCTACAAGCTAGTACCAGTTGAGCCAGAGAAGTTAGAAGAAGCCAACAAAGGAGAGAACACCAGCTTGTTACACCCTGTGAGCCTGCATGGAATGGATGACCCGGAGAGAGAAGTGTTAGAGTGGAGGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGCTGCATCCGGAGTACTT... | MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAADTGHSNQVSQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTET... | MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSGKARGWFYRHHYESPHPRISSEVHIPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKKRYSTQVDPELADQLIHLYYFDCFSDSAIRKALLGHIVSPRCEYQAGHNKVGSLQYLALAALITPKKIKPPLPSVTKLTEDRWNKPQKTKGHRGSHTMNGH | MEQAPEDQGPQREPHNEWTLELLEELKNEAVRHFPRIWLHGLGQHIYETYGDTWAGVEAIIRILQQLLFIHFQNWVST | MEPVDPRLEPWKHPGSQPKTACTNCYCKKCCFHCQVCFITKALGISYGRKKRRQRRRAHQNSQTHQASLSKQPTSQPRGDPTGPKE | MAGRSGDSDEELIRTVRLIKLLYQSNPPPNPEGTRQARRNRRRRWRERQRQIHSISERILGTYLGRSAEPVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQILVESPTVLESGTKE | TQPIPIVAIVALVVAIIIAIVVWSIVIIEYRKILRQRKIDRLIDRLIERAEDSGNESEGEISALVEMGVEMGHHAPWDVDDL | MRVKEKYQHLWRWGWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLVNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVSLKCTDLKNDTNTNSSSGRMIMEKGEIKNCSFNISTSIRGKVQKEYAFFYKLDIIPIDNDTTSYKLTSCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNNKTFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSVNFTDNAKTIIVQLNTSVEINCTRPNNNTRKRIRIQRGPGRAFVTI... | MGGKWSKSSVIGWPTVRERMRRAEPAADRVGAASRDLEKHGAITSSNTAATNAACAWLEAQEEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQRRQDILDLWIYHTQGYFPD | -TGGAAGGGCTAATTCACTCCCAAAGAAGACAAGATATCCTTGATCTGTGGATCTACCACACACAAGGCTACTTCCCTGATTAGCAGAACTACACACCAGGGCCAGGGGTCAGATATCCACTGACCTTTGGATGGTGCTACAAGCTAGTACCAGTTGAGCCAGATAAGATAGAAGAGGCCAATAAAGGAGAGAACACCAGCTTGTTACACCCTGTGAGCCTGCATGGGATGGATGACCCGGAGAGAGAAGTGTTAGAGTGGAGGTTTGACAGCCGCCTAGCATTTCATCACGTGGCCCGAGAGCTGCATCCGGAGTACTT... | TGGAAGGGCTAATTCACTCCCAACGAAGACAAGATATCCTTGATCTGTGGATCTACCACACACAAGGCTACTTCCCTGATTAGCAGAACTACACACCAGGGCCAGGGATCAGATATCCACTGACCTTTGGATGGTGCTACAAGCTAGTACCAGTTGAGCCAGAGAAGTTAGAAGAAGCCAACAAAGGAGAGAACACCAGCTTGTTACACCCTGTGAGCCTGCATGGAATGGATGACCCGGAGAGAGAAGTGTTAGAGTGGAGGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGCTGCATCCGGAGTACTTC... |
A1.AU.03.PS1044_Day0.DQ676872 | MGARASILSGGRLDAWEKIRLRPGGKKKYRLKHLVWASRELERFALNPXLLESAEGCQQIMEQLQPALKTGXEEIKSLFNTVATLYCVHQRIDVKDTKEALDKIEEIKNKSKQRTQQAAADTGNSGKVSQNYPIVQNAQGQMIHQNLSPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNVMLNIVGGHQAAMQMLKDTINEEAAEWDRLHPVHAGPIPPGQIREPRGSDIAGATSTPQEQLQWMTGNPPIPVGDIYKRWIILGLNKIVRMYSPTSILDIRQGPKESFRDYVDRFFKALRAEQATQEVKSWMTET... | MENRWQVMIVWQVDRMRIRTWNSLVKHHMHISKKTKKWSYRHHFESRNPKVSSEVHIPLGDAKIVVRTYWGLQTGEKDWQLGHGVSIEWRLKRYSTQIDPDLADQLIHLHYFNCFSDSAIRKAILGQVVSPRCEYQAGHNKVGSLQYLALRALVEPKKIKPPLPSVRKLAEDRWNKPQKTKGPRGSHTMNGH | MEQAPEDQGPQREPYNEWTLELLEELKQEAVRHFPRPWLHGLGQYIYNTYGDTWEGVEAIIRTLQQLLFVHFRIGCQHSRIGIXRGRRGRNGSGRX | MDPVDPNLEPWNHPGSQPTTACNKCYCKKCCYHCPSCFLNKGLGISYGRKKRRQRRGPPQGNKNYQXPVPKQPIPQTQRDSTGPEEPKKKVESKAETDRFD | MAGRSGDSDEDLLKAIRIIKJLYQSNPYPKPRGTRQARKNRRRRWRARQRQIDSISERILSTCLGRPAEPVPLQLPPIERLTLDCHEDCGTSGTQQSQGTETGVGRPQVSVESPGILESGTKN | MTPLEIWSIVGLVVALIIAIVVWTIVGIEYKKLLKQRKIDRLIERIRERAEDSGNESEGDTDELALLIEMGNYDLGNDINL | MRAKGIQMNLHCLLKWGTMILGMILICSAAEQRWVTVYYGVPVWKDAETTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEINLXNVTEEFNMWKNNMVEQMQEDIISLWDQSLKPCVKLTPLCVTLNCSHEVIFNSTLNNSTHSNKTLNNNTIEMKEEVRNCSYNVTTVLRDKKQKIYSLFYRLDVVPIGNNSDSEYILINCNTSTITQACPKVSFEPIPIHYCTPAGYAILKCNDKDFNGTGPCKNVSTVQCTHGIKPVVTTQLLLNGSLAENRTMIRSKNITDNKENIIVQLTEPVNITCIRPNNNTRKSVRIGPG... | MGGKWSKRSSKGWSEIREKIRQTPTAAEGVGAVSKDLDKHGAVTSSNVNHPSCTWLEAQEEGEVGFPVRPQVPLRPMTFKGAFDLSFFLKEKGGLDGLIYSXKRQEILDLWVYNTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPVDPDEVEKATEAENNSLLHPICQHGMDDDDRETLMWKFDSKLALKHVARELHPEFYKDC | -TGGATGGGTTAATTTACTCCARGAAGAGACAAGAAATCCTTGATCTGTGGGTATACAACACACAAGGCTACTTCCCTGATTGGCAGAATTACACACCAGGGCCAGGGATCAGGTACCCACTAACATTTGGATGGTGCTTCAAGCTAGTACCAGTTGATCCAGATGAAGTAGAGAAGGCCACTGAGGCAGAGAACAACAGCCTATTACACCCCATATGCCAACATGGAATGGATGATGATGATAGAGAAACATTAATGTGGAAGTTTGACAGCAAGCTGGCATTAAAGCACGTAGCCCGAGAGCTGCATCCGGAGTTCTA... | ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAGATTAGATGCATGGGAGAAAATTCGGCTAAGGCCAGGGGGAAAGAAAAAATATAGACTAAAACATCTAGTATGGGCAAGCAGGGAGCTGGAGAGATTCGCACTTAAYCCTRGCCTTTTAGAATCAGCAGAAGGATGTCAACAAATAATGGAACAGTTACAACCAGCTCTYAAGACAGGAWCAGAAGAAATTAAATCATTATTTAATACAGTAGCAACCCTCTATTGTGTACATCAAAGGATAGATGTAAAAGACACCAAGGAAGCTYTAGATAAAATAGAGGAAAT... | |
A1.CD.02.LA01AlPr.KU168256 | -TGGATGGGTTAATTCACTCCAAGAAAAGACAACAGATTCTTGATCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAATTACACACCAGGGCCAGGGATCAGATACCCACTAACATTCGGATGGTGCTTCAAGCTAGTACCAGTTGATCCAGCTGGAGTAGAGGAGGCTACTGAGGGAGAGAACAACTGCCTGTTACATCCTATATGCCAACATGGAATGGATGATGATGAGAAAGAAGTGTTAATGTGGAAATTTGACAGTAGCCTGGCATTTAAGCACGTAGCCCGTGAGCTGCATCCGGAGTTCTA... | MGARASVLSGGKLDAWEKIRLRPGGKKKYRMKHLVWASRELERFALNPSLLETTEGCQQIMDQLQSALKTGTEELKSLFNTVAVLYCVHQRIDVKDTKEALDKIEEIQEKSKQKNQQAAADTRNSGKVSQNSKVSQNYPIVQNAQGQMTHQALSPRTLNAWVKAVEEKAFSPEVIPMFTALSEGATPQDLNMMLNIVGGHQAAMQMLKDTINEEAAEWDRVHPVQAGPIPPGQLREPRGSDIAGTTSTLQEQIGWMTGNPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFFKILRAEQATQAVK... | MENRWQVMIVWQVDRMRIRIWHSLVKHHMYISKKAKDWFYRHHYESRHPRVSSEVHIPIGDAKLVVTTYWGLHTGEKDWHLGHGVSIEWRLKRYNTQVDPDLADQLIHLHYFNCFSDSAIRKAILGQVVRPRCEYPTGHKKVGSLQYLALKALVASRRIKPPLPSVRKLTEDRWNKPQKTRGLQGSHTRNGC | MEQAPEDQGPPREPYQEWMLELLEELKHEAVRHFPRPWLHGLGQHIYNTHGDTWEGVEVIIRMLQQLLFVHFRIGCQHSRIGIIRGRRVRDGAGRP | MELVDPNLDPWNHPGSQPTTACNSCYCKKCCWHCQLCFLRKGLGIFHGRKKRRRRRGTPHSSKNHQNPIPKQPISQTQRDSTGPEESKKKVESKAKSDRFA | MAGRSGDADAELLTAVRIIKILYQSNPYPKPRGTRQAQRNRRRRWRARQNQIDSLSERVLSTCLGRPEEPVPLQLPSLERLRLDCSEDCGTSGTQQSQGTETGVGRPQVSGESSVILGTGAEN | MTPLEIGAIAGLIVALILAIIVWTIVGIEYRKLLKQRRIDRLLEKIRERAEDSGNESDGDTEELSKLVEMGDRDFWAGNNL | MRVMGTQKSYQNLWRWGIVIFGLVIICNAGQLWVTVYYGVPAWKDAVTTLFCASDAKAYDKEVHNVWATHACVPTDPNPQEIKLVNVTEEFNMWKNPMVEQMHTDIIGLWDQSLKPCVQLTPLCVTLDCHDNITSDNITNNGNTTNSPNITNEMGGEIKNCSFNMTTELRDKRKKVHSLFYRLDIVEIGNSSSSNNHGQYRLINCNTSAITQACPKVTFEPIPIHYCAPAGFAILKCTEKRFNGTGPCRNVSTVQCTHGIKPVVSTQLLLNGSLAEENVTIRSENITDNAKTLIVQLVKPVNITCIRPNNNTRKGIGIGP... | MGGKWSKRSMPGWPEIRERMRRTQTPPAAQTPPAAVGVGPVSQDLDKYGAVTINNQASCAQLDEQEEEDVGFPVRPQVPLRPMTYKGAFDLGYFLKEKGGLDGLIHSKKRQQILDLWVYNTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPVDPAGVEEATEGENNCLLHPICQHGMEDDEKEVLMWKFDSSLAFKHVARELHPEFYKDC | -TGGATGGGTTAATTCACTCCAAGAAAAGACAACAGATTCTTGATCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAATTACACACCAGGGCCAGGGATTAGATACCCACTAACATTTGGATGGTGCTTCAAGCTAGTACCAGTTGATCCAGCTGGAGTAGAGGAGGCTACTGAGGGAGAGAACAACTGCCTGTTACATCCTATATGCCAACATGGAATGGAAGATGATGAGAAAGAAGTGTTAATGTGGAAATTTGACAGTAGCCTGGCATTTAAGCACGTAGCCCGTGAGCTGCACCCGGAGTTCTA... | TGGATGGGTTAATTCACTCCAAGAAAAGACAACAGATTCTTGATCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAATTACACACCAGGGCCAGGGATCAGATACCCACTAACATTCGGATGGTGCTTCAAGCTAGTACCAGTTGATCCAGCTGGAGTAGAGGAGGCTACTGAGGGAGAGAACAACTGCCTGTTACATCCTATATGCCAACATGGAATGGATGATGATGAGAAAGAAGTGTTAATGTGGAAATTTGACAGTAGCCTGGCATTTAAGCACGTAGCCCGTGAGCTGCATCCGGAGTTCTAC... |
A1.CH.03.HIV_CH_BID_V3538_2003.JQ403028 | MGARASILSGGKLDAWEKIRLRPGGKKAYKLKHLVWASRELERFAINPGLLETAEGCQQILEQLQPALKTGSEEYKSLYNTVATLYCVHQRIGVKDTKEALDKIEEIQNKSKQRTQQATTNTGSSSSVSQNYPIVQNAQGQMIHQNLSPRTLNAWVKVIEEKAFSPEVIPMFTALSEGATPQDLNMMLNIVGGHQAAMQMLKDTINEEAAEWDRTHPVHAGPIQPGQLREPRGSDIAGTTSTLQEQMGWMTSNPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFFKTLRAEQATQDVKNWMTET... | MENRWQVMIVWQVDRMKIRTWHSLVKHHMYISKKAKEWCYRHHYESRHPKVSSEVHIPLGEARLVVRTYWGLHTGEKDWHLGHGVSIEWRQKRYSTQIDPDLADQLIHIHYFDCFSESAIRKAILGEIVRPRCEYQAGHNKVGSLQYLALKALVAPKQTKPPLPSIRKLTEDRWNKPQKTKGHRGSHTMNGC | MEQAPEDQGPQREPYNEWMLELLEELKHEAVRHFPRQWLQGLGQHIYDTYGDTWEGVEAIVRILQQLLFVHFRIGCHHSRIGLMRGGRRGRDGAGRS | MEPVDPNLEPWKHPGSQPTTPCSNCYCKKCCWHCQVCFLKKGLGISYGRKKRKHRRGTHPSSKDHQNPLSKQPIPQTQRDSTGQEESKKKVESKAEADRFD | MAGRSGSTDEELIQAVRIIKILYQSNPYPKPRGTRQARKNRRRRWRARQRQIDSISERILSTCLGRSAEPVALQLPPLERLRLDCSEDSGTSGTQQSQGAETGVGRPQVSGESSVILGSGTES | MSPLEIYAIAGLIVALIIAIVVWTIVGIEYKRLLKQRRIDRLIERIRERAEDSGNESDGDAEELSTLVEVGDRALLVVNNL | MRVMGMQRNYPHWWKWGIVLFWLLIICNATEKLWVTVYYGVPVWKDAVTTLFCASDAKAYDTEVHNVWATHACVPTDPNPHEIPLANVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLAPLCVTLECNDANRTNINITEEEFKVKNCSFNMTTILRDKKQKMHALFYRTDVVQIGSNSSERYKYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCNDKEFNGTGPCMNVSTVQCTHGIKPVASTQLLLNGSLAEGKIMIRSENLTDNAKIIIVQLNESVSINCTRPNNNTRKSWHIGPGQAFYAMDDILGD... | MGGKWSKSSIVGWPEIRERMRRTPAAAEGVGAVSRDLERHGAITSSNTAATNASCAWLEAQEEEGEVGFPVRPQVPLRPMTFKGAVDLSHFLKEKGGLDGLIYSRKRQEILDLWVYNTQGYFPDWQNYTPGPGTRFPLTFGWCFKLVPVDQTEVEEATVGENNSLLHPICQHGMDDEEREVLMWKFDSHLAFRHFAKELHPEFYKDC | -TGGATGGGTTAATTTACTCCAGGAAAAGACAAGAAATCCTTGATCTGTGGGTCTACAACACACAAGGCTACTTCCCTGACTGGCAGAATTACACACCAGGGCCAGGGACCAGATTCCCACTAACATTTGGATGGTGCTTCAAGCTAGTACCAGTTGATCAAACTGAAGTAGAGGAGGCCACGGTGGGAGAGAATAACAGCCTATTACACCCCATATGCCAACATGGAATGGATGATGAAGAAAGAGAAGTGTTAATGTGGAAGTTTGACAGTCACCTGGCATTTAGACACTTTGCTAAAGAGCTGCATCCGGAGTTCTA... | ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATGCATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAGCATATAAACTGAAACATTTAGTATGGGCAAGCAGGGAGTTGGAAAGATTCGCAATTAACCCCGGCCTTTTAGAAACAGCAGAAGGATGTCAACAAATACTGGAACAGTTACAACCAGCTCTCAAGACAGGATCAGAAGAATATAAATCATTATATAATACAGTAGCAACCCTCTATTGTGTACATCAAAGGATAGGGGTGAAGGACACCAAGGAAGCTTTAGATAAAATAGAGGAGAT... | |
A1.CM.03.CM54_7.KU168305 | -TGGAAGGGTTAATCTACTCAAAGAAAAGACAAGACATCCTTGATATGTGGGTCTACAACACACAAGGCTTCTTCCCTGATTGGCAGAATTACACACCAGGGCCAGGGATCAGATACCCACTAACATTTGGATGGTGCTTCAAGTTAGTACCAGTAGATCCAGAGGTAGTAGAGAAAGCTACTGAGGGAGAGAACAACAGCCTATTACACCCTATGTGCCAACATGGAATGGATGATGATGAAAGAGAAACATTAATGTGGAAGTTTGACAGCTACCTGGCCTTCAAGCACACAGCCCGAGAGATGCATCCGGAGTTCTA... | MGARASVLSGGKLDAWEKIRLRPGGKKKYKLKHLVWASRELDRFALNPSLLETPEGCQQIMKQLQPALTTGTEELRSLYNTVATLYCVHRRIEVKDTKEALDKIEEIQNDSKQKTQQAAADTGSSSKVSQNYPIVQNAQGQMIHQSLSPRTLNAWVKAIEERAFSPEIIPMFSALSEGCTPQDLNMMLNIVGGHQAAMQMLKDTINEEAAEWDRLHPVHAGPIPPGQMREPRGSDIAGTTSTPQEQIGWMTGNPPIPVGDIYKRWIILGLNKIVRMYSPVSILDIKQGPKEPFRDYVDRFFKCLRAEQATQEVKGWMTET... | MENRWQGMIVWQVDRMRIRTWNSLVKHHMYVSKKAKGWFYRHHFESRHPKVSSEVHIPLGDARLVVRTYWGLHTGEKEWQLGHGVSIEWRIKKYSTQIDPDLADQLIHLHYFDCFSDSAIRKAILGQIVSPRCEYQSGHNKVGSLQYLALKALVTPTRTKPPLPSVKKLTEDRWNKPQKTRGHRGSHTMNGC | MEQAPEDQGPQREPYNEWMLELLEDLKHEAVRHFPRPWLHGLGQHIYNTYGDTWAGVEAIIRTLQQLLFVHFRIGCHHSRIGIIRGRRVRDGSGRS | MDPVDPNLEPWNHPGSQPTTACSTCFCKKCCYHCPVCFLRKGLGISYGRKKRKQRRGAPYSNKDHQNPIPEQPLPQTQGDSTGPEESKKKVESKTETDRFDW | MAGRSGNSDEALLTAIKIIKILYQSNPYPKPKGTRQARKNRRRRWRARQRQIDSIGERILSTCLGRSAEPVPFQLPPLERLHLDCSEDCGTSGTQQSQGTETGEGRPQVSVESPVVLGSGAEN | MQALEICAIVGLIVALILAIVVWSIVGIEYKRLLKQRKIDRLINRIRERAEDSGNESDGDTDELSKLVEMGNYNLGDDNYL | MRVMGTQTSYQNLWRWGTIILGMIIICSVAEERWVTVYYGVPVWRDAETTLFCASDAKAYDTEMHNVWATHACVPTDPNPQEILLGNVTEDFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLHCRNIPNVTSMTNCSYNTTTELRDKRQKVYSLFYKLDXVPINENNSQYXLINCNTSAXTQACPKVTFEPIPIHYCAPAGFAILKCKDPEFNGTGPCKNVSSVQCTHGIKPVVSTQLLLNGSLAEDKVMIRSENITDNAKTIIVQFNQSVEINCTRPNNNTRKSIRIGPGQSFYATDIIGDIRQASCTVKRAD... | MGGKWSKSSIVGWPNIRERMRQTPPAATGVGEVSQDLDKHGAITSSNINNPSCVWLQAQEEEEEVGFPVRPQVPVRPMTYKAALDLSHFLKEKGGLEGLIYSKKRQDILDMWVYNTQGFFPDWQNYTPGPGIRYPLTFGWCFKLVPVDPEVVEKATEGENNSLLHPMCQHGMDDDERETLMWKFDSYLAFKHTAREMHPEFYKDC | -TGGAAGGGTTAATCTACTCAAAGAAAAGACAAGACATCCTTGATATGTGGGTCTACAACACACAAGGCTTCTTCCCTGATTGGCAGAATTACACACCAGGGCCAGGGATCAGATACCCACTAACATTTGGATGGTGCTTCAAGTTAGTACCAGTAGATCCAGAGGTAGTAGAGAAAGCTACTGAGGGAGAGAACAACAGCCTATTACACCCTATGTGCCAACATGGAATGGATGATGATGAAAGAGAAACATTAATGTGGAAGTTTGACAGCTACCTGGCCTTCAAGCACACAGCCCGAGAGATGCATCCGGAGTTCTA... | --TGGAAGGGTTAATCTACTCAAAGAAAAGACAAGACATCCTTGATATGTGGGTCTACAACACACAAGGCTTCTTCCCTGATTGGCAGAATTACACACCAGGGCCAGGGATCAGATACCCACTAACATTTGGATGGTGCTTCAAGTTAGTACCAGTAGATCCAGAGGTAGTAGAGAAAGCTACTGAGGGAGAGAACAACAGCCTATTACACCCTATGTGCCAACATGGAATGGATGATGATGAAAGAGAAACATTAATGTGGAAGTTTGACAGCTACCTGGCCTTCAAGCACACAGCCCGAGAGATGCATCCGGAGTTCT... |
A1.CM.07.46_10.KP718918 | --TGTTGTTTGACTCTGGTAACTAGAGATCCCTCAGACCACTCTAGACGGTGT-AAAAATCTCTAGCA | MGARASVLSGGKLDAWERIRLRPGGKKKYRLKHLVWASREMERFALNPSLLETAEGCQQIIEQIQPAINTGTEELRSLFNTVVTLYCVHQKIEVKDTKEALDKVKEKQNESKQKTQQAAAATGNSSTVSQNYPIVQNAQGQMIHQNLSPRTLNAWVKVIEEKGFSPEVIPMFSALSEGATPQDLNMMLNIVGGHQAAMQMLKDTINEEAAEWDRLHPVHAGPIPPGQMREPRGSDIAGTTSTPQEQIGWMTSNPPIPVGDIYKRWIILGLNKIVRMYSPVSILDIKQGPKEPFRDYVDRFFKTLRAEQATQDVKNWMTET... | MENRWQVMIVWQVDRMRIRTWNSLVKHHMYTSKKAKGWFYRHHYESRHPKVSSEVHIPLGEASLLVRTYWGLQTGEKDWHLGHGVSIEWRLKRYSTQIDPDLADQLIHLHYFDCFSESAIRQAILGQVVRPRCAYQTGHNKVGSLQYLALKALVTPTRTKPPLPSVRKLTEDRWNKPQKTRGHRGSHTMNGC | MEQTPEDQGPQREPYNEWMLELLEDLKNEAVRHFPRPWLHGLGQHIYNTYGDTWAGVEAIIRILQQLLFVHFRIGCQHSRIGIIRGRRVRDGSSRP | MDPVDPNIEPWNHPGSQPTTACSSCYCKKCCFHCQVCFLRKGLGIFHGRKKRKRRRGTPHSSEDHQNPLPEQPSTQTQGDETGPEKSKKKVESKTETDRFD | MAGRSGSGDEGLLTAVRIIKILYQSNPLPKPKGTRQARRNQRRRWRARQRQIDSISERILSTCLGRSEEPVPLQLPPIERLHLDSGTQQSQGTETGEGGPQVSGESPAVLGSGTKN | MLPLQIWAIIGLVVALILAIIVWTIVGIEYIRLRKQKRIDRILERIRERAEDSGNESDGDTDELSKLVEMGNYNLGNDNNL | MRVMGTQMNYQNWWRWGTIILGMIIICSVAENLWVTVYYGVPVWRDAETTLFCASDAKAYDTEVHNVWATHACVPTDPNPQELPLKNVTEDFNMWKNSMVEQMHTDIISLWDQSLKPCVKLTPLCVTLNCSNINKNVTNGTDIDMMKNCSFNMTTEIRDKKQKVYSLFYKLDIVPISEGNSTSNNSQYILINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCRDPKFNGKGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEQEAMIRSENITDNTKTIIVQLNQSVIINCTRPNNNTRKSVRIGPGQSFYATGDIIG... | MGGKGSKSEWPKVRERMRQTPPAAKGVGEVSQDLDKHGAITSSNVNHPSCVWLEAQEDEEVGFPVKPQVPVRPMTYKAAFDLSFFLKEKGGLEGLIYSRKRQEILDLWVYNTQGFFPDWQNYTPGPGTRFPLTFGWCFKLVPVDPEVVEKETEGENNSLLHPMCQHGMDDEERETLMWKFDSRLALKHIAREKHPEFYKDC | -TGGAAGGGTTAATTTACTCAAGGAAAAGACAAGAAATCCTAGATCTGTGGGTCTACAACACACAAGGCTTCTTCCCTGACTGGCAGAATTACACACCAGGGCCAGGGACTAGATTCCCACTAACATTTGGATGGTGCTTCAAGCTAGTACCAGTTGATCCAGAGGTAGTAGAGAAAGAGACTGAGGGAGAGAACAACAGCCTATTACATCCCATGTGCCAACATGGAATGGATGATGAGGAAAGAGAAACATTAATGTGGAAGTTTGACAGCCGCCTGGCACTCAAACACATAGCCCGAGAGAAGCATCCAGAGTTCTA... | --TGTTGTTTGACTCTGGTAACTAGAGATCCCTCAGACCACTCTAGACGGTGTAAAAATCTCTAGCAGTGGCGCCCGAATAGGGACTCGAAAGCGGAAGTT---CCAGAGAAGCT----CTCTTGACGCAGGACTCGGCTTGCTGAGGTGCACACAGCAAGAGGCGAGAGTGCGGC-GACTGGTGAGTACGCCTAAGAATTTTTTGACTAGCGGAGGCTAGAAG-GAGAGAG--ATGGGTGCGAGAGCGTCAGTATTAAGTGGGGGAAAATTAGATGCATGGGAGAGAATTCGGTTAAGGCCAGGGGGAAAGAAAAAGTA... |
A1.CM.08.886_24.KP718928 | AAGCTTGCCTTGAGTGCTTCAAGTAGTGTGTGCCCATCTGTTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCACTCTAGGCGGTGT-AAAAATCTCTAGCA | MGARASVLSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFALNPSLLETTEGCQQILKQLQPALNTGTEELRSLYNTVATLYCVHQKIEVKDTKEALDKIEEMQDKNKQKTQQAAADTGSSSNVSQNYPIVQNAQGQMTHQSLSPRTLNAWVKVVEEKGFSPEVIPMFSALSEGATPQDLNMMLNIVGGHQAAMQMLKETINEEAAEWDRLHPAQAGPIPPGQLREPRGSDIAGTTSTPQEQIGWMTGNPPIPVGDIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFFKVLRAEQATQEVKHWMTET... | MENRWQVMIVWQVDRMRIRTWNSLVKHHMYVSKKAKKWLYRHHYDSRHPKVSSEVHIPLGNARLVVRTYWGLQTGEKDWHLGHGVSIEWRLRKYSTQVDPDLADQLIHLYYFDCFSDSAIRKALLGQVVSPSCAYQTGHNKVGSLQYLALKALVTPTRTRPPLPSVKKLTEDRWNKPQRTRDHRGSHTMNGC | MEQAPEDQGPQREPYNEWMLELLEELKHEAVRHFPRPWLHGLGQHIYNTYGDTWLGVEAIIRTLQQLLFVHFRIGCQHSRIGIIPGRRVRDGSGRS | MDPVDPNLEPWNHPGSRPTTACSSCYCKKCCYHCQACFLRKGLGISYGRKKRRQRRGTPYSSKDHQNPLPEQSLPQTQGEWTGPEESKEKVESQTETDRFD | MAGRSGDSDEGLLTAVRIIKILYQSNPYPKPKGSGQARRNRRRRWRARQRQIDSISERILSTCLGRSAEPVPLQLPPLERLHLDCSEDCGTSGTQQSQGTETGVGRPQAPVESPAVLGSGTKK | MLSLGIWEIWAIVGLIVVLIIAIVVWTIVVIECKRVLKQKKIDKIIARIRERAEDSGNESDGDTDELARLVEMGNYNLGDDNDL | MRVMGTQMNWQGLWRWGTIILGMIMICSVAGNLWVTVYYGVPVWRDAETTLFCASDAKAYDTEMHNVWATHACVPTDPDPQEINLENVTEDFNMWKNSMVEQMHTDIISLWDQSLKPCVKLTPLCVTLNCSSIITNSTVNETRQGMRNCSFNTTTALRDKRQRVYSLFYKLDIVPINGDNSTNTYMLINCNTSAITQACPKVTFEPIPIHYCTPAGFAILKCKDPTFNGTGPCRNVSSVQCTHGIKPVVSTQLLLNGSLAEQKVMIRSENITDNTKTIIVQLNQSVVINCSRPNNNTRRSIRIGPGQSFYATGEIIGDIR... | MGGKWSKSSIVGWPQIRERLRQASPAAEGVGKVSQDLDKHGAVTISNINHPSNVWLEAQKEEDVGFPVRPQVPLRPMTYKAALDLSHFLKEKGGLEGLTYSRKRQDILDLWVYNTQGFFPDWQNYTPGPGIRYPLTFGWCFKLVPVEPEEVERATEGENNSLLHPMCQHGMDDDERETLIWKFDSHLAFKHIAREMHPEFYKDC | -TGGAAGGGTTAACTTACTCAAGGAAAAGACAAGACATCCTTGATCTGTGGGTCTACAACACACAAGGCTTCTTCCCTGATTGGCAGAATTACACACCAGGGCCAGGGATCAGATATCCATTAACATTTGGCTGGTGCTTCAAGCTAGTACCAGTTGAGCCAGAGGAAGTAGAGAGAGCTACTGAGGGAGAGAACAACAGCCTATTACACCCTATGTGCCAACATGGAATGGATGATGACGAAAGAGAAACATTAATATGGAAGTTTGACAGCCACCTGGCCTTCAAACATATAGCCCGAGAGATGCATCCGGAGTTCTA... | --AAGCTTGCCTTGAGTGCTTCAAGTAGTGTGTGCCCATCTGTTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCACTCTAGGCGGTGTAAAAATCTCTAGCAGTGGCGCCCGAA-AGGGACTTGAAAGCGAAACGTTCCAGAGAAGTT-CTCTCGACGCAGGACTCGGCTTGCTGA-GTGCACACAGCAAGAGGCGAGAG-CGGC-GACTGGTGAGTACGCCTAAGAATTTTTTGACTAGCGGAGGCTAGAAG-GAGAGAG--ATGGGTGCGAGAGCGTCAGTATTAAGTGGGGGAAAATTAGATGCATGGGAAAA... |
A1.CY.05.CY022.FJ388893 | MGARASVLSGGKLDAWEKIRLRPGGKKQYRLKHLVWASRELDRFALNPGLLETAEGCQQILEQIQPAYKTGTEELKSLFNTVATLYCVHKRIEVKDTKEALDKIEEIQNKSQQKTQQAAADTGNSSKVSQNYPIVQNAQGQMVHQHLSPRTLNAWVKVIEEKAFSPEVIPMFTALSEGATPQDLNTMLNIVGGHQAAMQMLKDTINEEAAEWDRLHPVQAGPIPPGQIREPRGSDIAGTTSTPQEQLQWMTGNPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFFKALRAEQATQEVKGWMTDT... | MENRWQVMIVWQVDRMRIRTWHSLVKHHMYISRKAKGWVYRHHYESRHPRVSSEVHIPIEKAILVVKTYWGLQTGEKDWHLGHGVSIEWRLKRYSTQIDPDVADQLIHLHYFNCFSESAIRQAILGQLVSSRCEYQAGHNKVGSLQYLALRALVEPKKIRPPLPSVKKLTEDRWNKPQKTKGPRGSHTMNGH | MEQAPEDQGPQREPYNEWTLELLEELKHEAVRHFPRPWLHGLGQHIYNTYGDTWEGVEAIIRILQQLLFVHFRIGCQHSRIGIIRGRRVRNGSSRS | MDPVDPNLDPWNHPGSQPTTACNKCYCKKCCYHCQVCFLKKGLGISYGRKKRRQRRDTPHNSKDHQTPIPKQSLPQKQRVSTGSEESKKKVESKTEAGRFD | MAGRSGDSDETLLTTVRIIKLLYQSNPYPRNSGSRQAQKNRRRRWRARQRQVDSISERILSTCLGRPEEPVPLQLPPLERLNLDCHEDCGNSGTQQSQGVETGVGRPQVSVESPGILGSGTEN | MSPLEISAIAGLIVALILAIVVWTVVAIEYRKVLRQRKIDRLIERIRERAEDSGNESEGDANELALLDEMGNHDLGNDNNL | MRAKGMQMNLHCLMKWETMILGMIIICRAIKNSWVTVYYGVPGWRDAKTTFFWASNAKAYKSKGHKVWATLACVPPDPNPQKINLEKVTKKFNMGKNNMEKQMHINIISLWDKSLKPCVKLTPLCVTLECSNNVTSTNVTTNITSDIREEIKNCSYNITTELKDKKQRVHSLFYRLDIVPINSDNSDNDTSKEYRLINCNTSAITQACPKVSFEPIPIHYCAPASFAILKCNDMMFNRTGICRNVSTVQCTHGIRPVVSTQLLLNGSLAEKEIMIRSENITNNAKNIIVQLTKPVNITCIRPNNNTRKSIHIGPGQAFYA... | MGGKWSKSRQWAEIRERMRRTPPRTPPAAEERAASGVGAVSQDLDKHGAVT | ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAAAATTAGATGCATGGGAGAAAATTCGGCTAAGGCCAGGGGGAAAGAAACAATATAGACTAAAACATCTAGTATGGGCAAGCAGGGAGCTGGACAGATTCGCACTTAACCCTGGCCTTTTAGAGACAGCAGAAGGATGTCAGCAAATACTAGAACAGATACAACCAGCTTACAAGACAGGAACAGAAGAACTTAAATCATTATTTAATACAGTAGCAACCCTCTATTGTGTACATAAAAGGATAGAGGTAAAAGACACCAAGGAAGCTCTAGATAAAATAGAGGAAAT... | ||
A1.CY.05.CY051.FJ388903 | MGARASVLSGGKLDAWEKIRLRPGGKKRYRIKHLVWASRELERFALNPSLLETAEGCQQIMEQLQPALKTGTEELKSLFNTVATLYCVHQKIDVKDTKEALDKIEEIQSKSKQKSQQAAADTGNSSKVSQNYPIVQNAQGQMVHQNLSPRTLNAWMKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNIVGGHQAAMQMLKDTINEEAAEWDRLHPAHAGPIPPGQIREPRGSDIAGTTSTPQEQLQWMTGNPPIPVGDIYKRWIILGLNKIVRMYSPVSILDIKQGPKEPFRDYVDRFFKALRAEQATQEVKGWMTET... | MENRWQVMIVWQVDRMRIRTWHSLVKHHMHISKKAKNWCYRHHFESRHPKVSSEVHIPLGDAILVVRTYWGLQTEEKDWQLGHGVSIEWRLKRYSTQIDPDVADQLIHLHYFNCFSDSAIRKAILGHVVRPRCEYQAGHNKVGSLQYLALRALVAPKKIRPPLPSVRKLVEDRWNKPQKTRGPRGSHTMNGH | MEQAPEDQGPQREPYNEWTLELLEELKHEAVRHFPRPWLHGLGQHIYETYGDTWEGVEAIIRTLQQLLFVHFRIGCQHSRIGIIRGRRVRDGSGRS | MDPVDPNLEPWNHPGSQPTTACNKCYCKKCCYHCQLCFLNKGLGISYGRKKRKQRRGPPQSSEDHQIPIPKQPIPQTRGDSTGPEESKKKVESKTEADRFD | MAGRSGNSDEDLLKAVRIIKFLYQSNPYPKPGGTRQARKNRRRRWRARQRQIDSISERILSTCLGRPTEPVPLQLPPLERLHIDCSEDCGTSGTQQSQGVETGVGRPQVFGESPGILESGTKN | MSPLEICAIVGLVVALIIAIVVWTIVGIEYKRLLKQRKIDRLIERIRERAEDSGNESEGDTEEFSQLIGMGNGDLGNDNNL | MKAKGIQRNSHSLLGWGMVILGMIIICSTAENLWVTVYYGVPVWKEADTTLFCASDAKAYKTEVHNVWATHACVPTDPNPQEINMENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVELTPLCVTLECRNVYTTNITNITKEMQGEIKNCSFNMTTELRDKRQKVYSLFYKLDIVQINSNSSNSSSDSSEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCNDKEFNGTGLCRNVSTVQCTHGIRPVVSTQLLLNGSLAENKTMIRSENITNNAKNIIVQFTEPVNITCIRPNNNTRKSVRIGPGQAFYAA... | MGGKWSKRSTVGWPEVRERMRQTPTAATGVGAVSQDLDKHGA | ATGGGTGCGAGAGCGTCAGTATTAAGTGGGGGAAAATTAGATGCATGGGAGAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAGATATAGAATAAAACATTTAGTATGGGCAAGCAGGGAGCTGGAAAGATTCGCACTTAACCCTAGCCTTTTAGAAACAGCAGAAGGATGTCAACAAATAATGGAACAGTTACAACCAGCTCTCAAGACAGGAACAGAAGAACTTAAATCATTATTTAATACAGTAGCAACCCTCTATTGTGTACATCAAAAGATAGATGTAAAAGATACCAAGGAAGCTCTAGATAAAATAGAGGAAAT... | ||
A1.CY.05.CY064.FJ388909 | MGARASVLSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFALNPSLLETKEGCQQIMEQLQPALKTGTEELRSLFNTVATIYCVHQRIDVKDTKEALDKVEEIQNKSRQKAEQAAANTGNSSKVSQNYPIVQNAQGQMVHQAVSPRTLNAWVKVIEERAFSPEVIPMFSALSEGATPQDLNMMLNIVGGHQAAMQMLKDTINEEILEWDRIHPVHAGPNPPGQMREPRGTDIAGTTSTLQEQIGWMTSNPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIKQGPKEPFRDYVDRFFKALRAEQASQDVKSWMTET... | MENRWQVMIVWQVDRMRIRTWNSLVKHHMHISKKAHRWFYRHHYESRHPKVSSEVHIPLGDARLVVKTYWGLHTGEKDWHLGHRVSIEWRRQRYSTQIDPDLADRLIHLYYFDCFSDSAIRKAILGQVVSPRCEYQTGHNKVGSLQYLALKALVTPTRIKPPLPSVKKLTEDRWNKPQKTRGPRGSHTLNGC | MEQAPEDQGPQREPYIEWMLETLEDLKHEAVRHFPRPWLHGLGQHIYSTYGDTWEGVEAITRILQQLLFIHFRIRCQHSRIGIIRRRRGRDGSSRP | MDPVDPNLEPWNHPGSRPTTPCSKCYCKACCFHCLVCFQNKGLGISYGRRKRRRRRGTPQSCEDHQNPVPKQPTPQFKGISTDPEESKKKVESKAETDRFD | MAGGSGDGEEELLRAVRIIKILYQSNPPPSSRGSRQTRKNRRRRWRARQRQIDSISERVLSACLGRPPEPVPLQLPPLERLHLDCSEDCGTSGTQQSQGVETGVGRPQVSGESSDILGEGDKK | MSPLEICAIAGLVVALILAIVVWTIVGIEIKQVLKQRKIDRLIERIRERAEDSGNESDGDAEDLSLLVEMGHDNLGYDNNL | MRVMGTQRTCPCLWRWGMIILGMIIICSVTGNLWVTVYYGVPVWKDADTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEINLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVQLTPLCVTLNCRDDDDINVANSTDTTNEVKNGSANITDEKNCSFTMTTDLIDKLIEVFSVFYRLDVVHIDKNSNNSGYRLIN | MGSKWSKSSIVGWPEIRERMRRTPAAAEGVRAAEGVGAVSQDLAKHGAIT | ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAAAATTAGATGCATGGGAGAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGACTGAAACATTTAGTATGGGCAAGCAGGGAGCTGGAAAGATTCGCACTTAACCCTAGCCTTTTAGAAACAAAGGAAGGATGTCAACAGATAATGGAACAGTTACAACCAGCTCTCAAGACAGGAACAGAAGAACTTAGATCATTATTTAATACAGTAGCAACCATCTATTGTGTACATCAAAGGATAGATGTAAAAGACACCAAGGAAGCATTAGATAAAGTGGAGGAAAT... | ||
A1.CY.05.CY106.FJ388925 | MGARASVLSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFALNPGLLETAEGCQQIMEQLQSALKTGTEELKSLNNTVAVLYCVHQRIEVKDTKEALDKIEEIQNKSKQRTQQAAADTGDSSKVSRNYPIVQNAQGQFIHQNLSPRTLNAWVKVIEEKEFSPEVIPMFSALSEGATPQDLNVMLNIVGGHQAAMQMLKDTINEEAAEWDRLHPVQAGPIPPGQIREPRGSDIAGTTSTPQEQLQWMTGNPPIPVGDIYKRWIILGLNKIVRMYSPVSILDIKQGPKEPFRDYVDRFFKALRAEQATQEVKGWMTET... | MENRWQVMIVWQVDRMRIRTWHSIVKYHMYVSKKAKNWLYRHHFESQHPKVSSEVHIPLGDARIVVRTYWGLQTGEKDWQLGHGVSIEWRLKRYSTQIDPDVADQLIHLHYFDCFSESAIRKAILGQVVSPRCDYQAGHNKVGSLQYLALRALVAPKKIKPPLPSVRKLTEDRWNKPQKTRGPRGSHTINGH | MEQAPEDQGPQREPYNQWTLELLEELKHEAVRHFPRPWLHGLGQHIYNTYGDTWEGVEAIIRILQQLLFVHFRIGCQHSRIGIIRGRRVRDGSSRP | MDPVDPNLEPWNHPGSQPTTACSKCYCKKCCYHCQYCFLNKGLGISYGRKKRRQRRGTPQSNKDHQNLIPKQSMPQTQGVSTGPEESKEKVESKTEADRFD | MAGRSGDSDEELLRAIRIIKILYQSNPCPKPRGSRQARKNRRRRWRARQRQIDSISERVLCACLGRSEEPVPLQLPPLERLHLDCREDCGTSGTQQSQRVETGVGRPQVSGESPGVLESGTKN | MTPLEIYAIVGLVVAFIIAIVVWTIVGIEYKRLLKQRKIDRLIERIRERAEDSGNEGEGDTEELSLLIEMGNDDLGNDNNL | MRAKGIRRNSHCLLRWGTMILGMIIICSAAENLWVTVYYGVPVWKEAKTTLFCASDAKAYKTEVHNVWATHACVPTDPNPQEINLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLNCSHNVTKVTNNGTATANITGEMKGEIKNCSFNITTELRDKTQKIYSLFYRLDVVEIDKNSSNYRLINCNTSAITQACPKVTFEPIPIHYCAPAGFAILKCNDKEFNGTGPCRDVSTVQCTHGIKPVVSTQLLLNGSLAENKTMIRSENITNNAKNIIVQLTEPVNITCIRPNNNTRKSVHIGPGQAFYATG... | MGGKWSQSSIVGWPEIRERIRQTPTTAAARGVGAVSQDLDKHGAVT | ATGGGTGCGAGAGCGTCAGTATTAAGTGGGGGAAAATTAGATGCATGGGAGAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGACTGAAACATTTAGTATGGGCAAGCAGGGAGCTGGAAAGATTCGCACTTAACCCTGGCCTTTTAGAAACAGCAGAAGGATGTCAACAAATAATGGAACAGTTACAATCAGCTCTCAAAACAGGAACAGAGGAACTTAAATCATTAAATAATACAGTAGCAGTCCTCTATTGTGTACATCAACGGATAGAGGTAAAAGACACCAAGGAAGCTCTAGATAAAATAGAGGAAAT... | ||
A1.CY.05.CY140.FJ388938 | MGARASVLSGGKLDAWEKIRLRPEGKKRYKLKHLVWASRELERFALNPRLLETREGCQQIMEQLQSVLKTGTEELKSLYNTVATLYCVHQQIDVRDTKEALDKIEEIQNKSKRQQAAADTGNSSKVSQNYPIVQGAQGQMMHQNLSPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNVMLNIVGGHQAAMQMLKDTINEEAAEWDRLHPVHAGPIPPGQIREPRGSDIAGTTSTPQEQLQWMTGNPPIPVGDIYKRWIILGLNKIVRMYSPTSILDIKQGPKETFRDYVDRFFKALRAEQATQEVKGWMTETLL... | MENRWQVMIVWQVDRMRIRVWHSLVKHHMYISKKAKNWLYKHHFESRHPKVSSEVHIPLGDARLVVKTYWGLQTGEKDWHLGHGVSIEWRLRRYSTQIDPDLADQLIHLHYFNCFSEFAIRKAILGQVVSPRCEYQAGHNKVGSLQYLALRALVAPKKIRPPLPSVRKLAEDRWNKPQKTRGPRGSHTMNGH | MEQAPEDQGPQREPYNEWTLELLEELKQEAVRHFPRPWLHGLGQHIYNTYGDTWEGVEAIIRILQQLLFVHFRIGCQHSRIGIMRGRRVRNGPGRS | MDPVDPNLEPWNHPGSQPATACSKCYCKKCSYHCPVCFLNKGLGISYGRKKRKQRRRTPQRNKDHQNPIPKQPIPQAQGDSTGPEESKKKVESKTGADQFD | MAGRSGNSDEELLRGIRIIKILYQSNPYPKPRGTRQARKNRRRRWRARQEQINSISERILSTCLGRPAEPVPLQLPPLERLHLDCREDGGTSGTQQSQGVETGVGRPQVSGESPDILESGTKN | MTPLEICSIVGLVVALIIAIVVWTIVGIEYKKLLKQRKIVRLIERIRERAEDSGNESEGDTEELALLIEMGDYDLGIDNNL | MRAKGIQRNSHCLLKWGTMILGLIIICSAADNLWVTVYYGVPVWKDAKTTLFCASDAKAYKTEMHNVWATHACVPTDPNPQEINLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLNCTNIKNITDDEMRREIKNCSFNMTTELRDKQKKVYSLFYRLDVVPIRNNKNNSSETNSSEAGEYRLINCNTSAITQACPKVSFEPIPIHYCTPAGFAILKCNDKEFNGTGLCRNVSTVQCTHGIRPVVSTHLLLNGSLAENRTMIRSENITNNAKNIIVQLTEPVNITCIRPNNNTRKSVHIGPGQAFYAT... | MGGKWSKSSIVGWSEIRERIRKTPTAAEGVGAVSQDLDKHGAVT | ATGGGGGCGAGAGCGTCAGTATTAAGTGGGGGAAAATTAGATGCATGGGAGAAAATTCGGTTAAGGCCAGAGGGAAAGAAAAGGTATAAACTAAAACATCTAGTATGGGCAAGCAGGGAGCTGGAAAGATTCGCACTTAACCCTCGCCTTTTAGAAACAAGAGAAGGATGTCAACAAATAATGGAACAGTTACAATCAGTTCTCAAGACAGGAACAGAAGAACTTAAATCATTATATAATACAGTAGCAACCCTCTATTGTGTACATCAACAAATAGATGTAAGAGACACCAAGGAAGCTCTAGATAAAATAGAGGAAAT... | ||
A1.CY.05.CY153.FJ388942 | MGARASLLSGGKLDAWEKIRLRPGGKKKYRMKHLVWASRELERFALNPGLLETADGCQQIIEQLQSALSTGTEGLKSLHNTVAVLYCVHQRIDVKDTKEALDKIEDIQKKSKQRTQQAAADAGNSSQVSRNYPIVQNAQGQMIHQNLSPRTLNAWVKVIEETAFSPEVIPMFSALSEGATPQDLNVMLNIVGGHQAAMQMLKDTINEEAAEWDRLHPVHAGPIPPGQLREPRGSDIAGTTSTPQEQLQWMTGTPPIPVGDIYKRWIILGLNKIVRMYSPVSILDIKQGPKEPFRDYVDRFFRALRAEQATQEVKGWMTET... | MENRWQVMIVWQVDRMRIRTWHSLVKHHMYISKKAKNWVYRHHFESRHPKLSSEVHIPLGDARLVVKTYWGLQTGEKDWQLGHGVSIEWRLQRYSTQIDPDVADQLIHLHYFNCFSESAIRKAILGQVVSPRCDYQAGHNKVGSLQYLALRALVAPKKIKPPLPSVKKLAEDRWNESQKTRGPRGSHTMNGH | MERVPEDQGPQREPYNEWALELLEELKHEAVRHFPRSWLHGLGQHIYNTYEDT | IDPVDPNLEP | MARRSRDSDEELLGAIKIIKILYQSNPYPKPRGTRQARKNRRRRWRARQKQIDSISKRVLSTCLGRPAEPVPLQLPPLERLCLDCCEDCGTSGTQQSQRVETGVGRPQVSGESPGILESGTEN | MTPLEICAIVRLVVALIIAIVV | MRAKGIQRSLRSLLRWGTMILGMIIICSAAENLWVTVYYGVPVWKDAETTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEINLENVTEEFNMWKNNMVEQMHTDIVSLWDQSLKPCVELTPLCVTLNCSHNVTANDTVSIKEGMEGEIKNCSFNVTTELRDKTQKVYSLFYRPDVEQIDNSSSYRLINCNTSAIAKACPKVTFEPIPIHYCAPAGFAILKCNDKEFNGTGPCRNVSTVQCTHGIRPVVSTQLLLNGSLAENKTMIRSENITSNTKNIIVQLTEPVNITCIRPNNNTRKSIHMGPGRAFYATGEIIGDI... | MGGKWSKSSIVGWPEIRERIRQTPAAAKGVGAVSQDLDKHGAVT | ATGGGTGCGAGAGCGTCACTATTAAGTGGGGGAAAATTAGATGCATGGGAGAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGAATGAAACATCTAGTATGGGCAAGCAGGGAGCTGGAAAGATTTGCGCTTAACCCTGGCCTTTTAGAAACAGCAGATGGATGTCAACAAATAATAGAACAATTACAATCAGCTCTCAGTACAGGAACAGAAGGACTTAAATCATTACATAATACAGTAGCAGTCCTCTATTGTGTACATCAACGGATAGATGTAAAAGACACCAAGGAAGCTCTAGATAAAATAGAGGATAT... | ||
A1.CY.06.CY178.FJ388953 | MGARASVLSGGKLDKWEKIRLRPGGKKQYRLKHLVWASRELERFALNPGLLETAEGCQQIIQQLQSALKTGTEELRSLFNTVATLYCVHQRIDVKDTKEALDKIEEIQNKSKQSTQQAAATADTGNSNKVSQNYPIVQNAQGQMIHQNLSPRTLNAWVKVIEEKAFSPGVIPMVSALSEGATPQDLNMMLNIVGGHQAAMQMLKDTINEEAAEWDRLHPIQAGPIPPGQLREPRGSDIAGTTSTPQEQLQWMTGNPPIPVGDIYKRWIILGLNKIVRMYSPVSILDIKQGPKEPFRDYVDRFFKTLRAEQATQEVKGWMT... | MENRWQVMVVWQVDRMRIRTWHSLVKHHIYISKKARNWIYKHHFESRHPKESSEVHIPLGDARLVVKTYWGLQTGEKDWHLGHGVSIEWRLRRYSTQIDPDLADQLIHMHHFNCFSDSAIRKAIIGQVVSPRCDYQAGHNKVGSLQYLALRALVAPEKIRPPLPSVRKLAEDRWNTPQKTRGLRGSHTMNGY | MEHAPEDQGPQREPYNEWILELLEELKHEAVRHFPRPWLHGLGQHIYNTYGDTWEGVVAIVRILQQLLFVHFRIGCQHSRIGIIRGRRVRDGSGRS | MDPVDPNLEPWNHPGSQPTTACNKCYCKKCCYHCQACFLNKGLGISYGRKKRKQRRGPSPSSKDHQNPIPKQPIPQAQRDSTGSEESKKKVESKAEADRFD | MAGRSGNSDEDLLQAVRIIKILYQSNPYPKPRGTRQAQRNRRRRWRARQRQIDSISERILSDCLGRPAEPVPLQLPPLERLHIDCCEDCGTSGTQQSQGVETGVGRPQVPCESPGILDSGAKN | MSPLEIYAIVGLVVALIIAIIVWTIVGIEYKRLLKQRKIDRLIERIRERAEDSGNESEGDTEELAKLVEMGDFDPWVGDNL | MRVKETQRNWPNLWKWGTLILGLVIICSASDNLWVTVYYGVPVWRDADTTLFCASDAKAHSTEVHNVWATHACVPTDPNPQEIHLENVTENFNMWKNNMVEQMQEDVISLWDQSLKPCVKLTPLCVTLNCGVIPNTSEITNCSYNMRTNLRDKTHKMYSLFYRLDIVPIDNSSDRAL | MGNKWSKRNKEGWPEIRERMRQNPTAATGVGAVSQDLDKHGAVT | ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAAAATTAGATAAATGGGAAAAAATTCGGTTACGGCCAGGGGGAAAGAAACAATACAGACTAAAACATCTAGTATGGGCAAGCAGGGAGCTGGAAAGATTTGCACTTAACCCTGGCCTTTTAGAAACAGCAGAAGGATGTCAACAAATAATACAACAGTTACAATCAGCTCTCAAGACAGGAACAGAAGAACTTAGATCATTATTTAATACAGTAGCAACCCTCTATTGTGTACATCAAAGGATAGATGTAAAAGACACCAAGGAAGCTCTAGATAAAATAGAGGAAAT... | ||
A1.CY.07.CY196.JF683748 | MGARASVLSGGKLDEWERIRLRPGGKKKYRIKHLVWASRELERFAVNPGLLETAEGCQQIIEQLQPTLKTGSEEIKSLYNTVATLWCVHQRMAVKDTQEALDKLEEAQNKNKQKTQQRVAATGSSCSSQNYPIVQNAQGQMTHQALSPRTLNAWVKVVEEKAFSPEVIPMFTALSEGATPQDLNMMLNIVGGHQAAMQMLKDTINEEAAEWDRVHPVHAGPIPPGQMREPRGSDIAGTTSTLQEQIGWMTSNPPIPVGDIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFFKALRAEQATQDVKNWMTETL... | MENRWQVMIVWQVDRMRIRTWHSLVKHHMYVSKKAKNWVYRHHFESRHPKVSSEVHIPLEEARLVVRTYWGLQTGEKDWQLGHGVSIEWRLKRYSTQIDPDLADQLIHLHYFNCFSDSAIRKALLGQVVSPRCEYQAGHTKVGSLQYLALKALVAPTKVKPPLPSVRKLAEDRWNKPQKTRGPRGSHTMNGH | MEQAPENQGPQREPYNEWALELLEELKHEAVRHFPRPWLHGLGQHIYNTYGDTWEGVEAIIRILQQLLFVHFRIGCQHSRIGIIRGRRVRDGSSRS | MDPVDPNLEPWNHPGSQPTTACTKCYCKKCCYHCQVCFLNKGLGISYGRKKRRQRRGPPQSSKDHQNLISKQSIPQTQGDSTVPEESKKKVESKAEADRFD | MAGRSGDSDEDLLRAVRIIKILYQSNPYPKPKGTPQSRKNRRRRWRARQRQIDSISHRILSTCLGRSAEPVPLQLPPLERLHLDCHEDCGTSGTQQSQGVETGVGGPQVSGEPPNILESGNKN | MLALEIWAIVGLVVALLLAIVVWTIVGIEYKRLLKQRKIDRLIERIRERAEDSGNESEGDTDELALLVEMGDYDLGNNNNL | MRAKGTQMNLHCLLRWGTMILGIIIICSATENLWVTVYYGVPVWKDAETTLFCASDAKSYETEVHNVWATHACVPTDPNPQEINLKNVTEEFNMWKNGMVEQMHNDIISLWDQSLKPCVKLTPLCVTLDCHNVTHNNSTKDNNDTHNNSTKDNSTLEAEKDIRNCSFNITTELRDKTQKVYSLFYRLDVVPINNDTSSTQYRLINCNTSAITQGCPKVSFEPIPIHYCTPAGFAIIKCNDKEFNGTGPCRNVSTVRCTHGIRPVVSTQLLLNGSLAENKTMIRSENITNNAKNIIVQLTEPINITCIRPNNNTRKSIRIG... | MGGKWSKSSIVGWPEIRERIRRTPTSTAASGVGAVSQDLNKHGAIT | ATGGGTGCGAGAGCGTCAGTATTAAGTGGGGGAAAATTAGATGAATGGGAAAGAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGAATAAAACATTTAGTATGGGCAAGCAGGGAGTTGGAAAGATTTGCAGTTAACCCTGGCCTTTTAGAAACAGCAGAAGGATGTCAGCAAATAATAGAACAGTTACAGCCAACTCTCAAGACAGGATCAGAAGAAATTAAATCCTTGTATAATACAGTAGCAACTCTCTGGTGCGTACACCAACGGATGGCTGTAAAAGACACCCAGGAAGCTTTAGATAAATTAGAGGAAGC... | ||
A1.CY.07.CY207.JF683759 | MGARASVLSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFALNPSLLETAGGCQQIIEQLQPALNTGTEELKSLYNTVATLYCVHQRIEVKDTKEALDKIEEIQNKSKQKTTDDTGSSSKVSHNYPIVQNAQGQMIHQTLSPRTLNAWVKVIEEKGFSPEVIPMFSALSEGATPPDLNTMLNIVGGHPAAMQMLKDTINEEAAEWDRLHPVHAGPIPPGQLREPRGSDIAGTTSTPQEQVQWMTGTPPIPVGDIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFFKTLRAEQATQEVKGWMTETLLV... | MENRWQVMIVWQVDRMRIRTWHSIVKHHIYISRKAKNWIYKHHYESRHPKESSEVHIPLGDARLVVKTYWGLQTGEKDWQLGHGVSIEWRLRNYSTQIDPDMADQLIHLHYFNCFSDSAIRKAILGHIVSPKCDYQAGHNKVGSLQYLALKALVAPTKTKPPLPSVRKLTEDRWNEPQKTRGHRGSHTMNGH | MERAPEDQGPQREPYNEWTLELLEELKQEAVRHFPRPWLHGLGQHIYNTYGDTWEGVEAIIRILQQLLFVHFRIGCLHSRIGILRGRRVRDGSGRS | MDPVDPNLEPWNHPGSQPTTACNKCFCKKCCYHCPLCFLNKGLGISYGRKKWRQRRRTPQSNKDHQNPIPKQSRPRTQGVPTGPEESKEKVESKTETDRFD | MAGRSGDNDEELLRAIRTIKILYQSNPDPEPRGSRQARKNRRRRWRARQRQIDSISERILRTCLGRPAEPVPLQLPPIERLHLDCREDCGTSGTQQSQRVETGVGSPQVSGESPSILE | MTPLEICAIAGLVVALIIAIVVWTIVGIEYRRLLRQRKIDRLLERIRERAEDSGNESEGDTDELARLIEMGNDDLGNDNNL | MKAKGIQMSSHGLLRWGMMILGMIIICSAAGNLWVTVYYGVPVWKDADTTLFCASDAKAIKTEVHNVWATHACVPTDPNPQEINLENVTEDFNMWKNNMVEQMQTDIISLWDQSLKPCVKLTPLCVTLDCSHNITSNNTDNNPNNTKVEVEMRNCSFNTTTEIRDRTQKVYSLFYKVDVVEIDSNSNNSNTNNYRLINCNTSVITQACPKVTFEPIPIHYCAPAGFAILKCNDKEFNGTGPCKNVSSVQCTHGIKPVVSTQLLLNGSLAENKTMIRSENITNNAKNIIVQLTKPVQINCTRPNNNTRKSVRIGPGQAFYA... | MGNKWSKRSTVGWPEVRERMRQTGAASGVGAVSQDLDKHGAIT | ATGGGTGCGAGAGCGTCAGTATTAAGTGGGGGAAAATTAGATGCGTGGGAGAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGACTAAAACATCTAGTATGGGCAAGCAGGGAGCTGGAAAGATTCGCACTTAACCCTAGCCTTTTAGAAACAGCAGGAGGATGTCAACAAATAATAGAACAGTTACAACCAGCTCTCAATACAGGGACAGAAGAGCTTAAATCATTATATAATACAGTAGCAACCCTCTATTGTGTACATCAACGGATAGAGGTAAAAGACACCAAGGAAGCTCTAGATAAAATAGAGGAAAT... | ||
A1.CY.07.CY208.JF683760 | MGARASVLSGGKLDAWEKIRLRPGGKKKYRMKHLVWASRELERFALNPGLLETKEGCQQIMEQLQSALNTGTKELKSLYNAVATLYCVHQGIDVKDTREASDKIEEIQNKSKQKIQQAAADTGNSSQVSRNYPIVQNAQGQMIHQNLSPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNVMLNIVGGHQAAMQMLKDTINEEAAEWDRLHPPHAGPIPPGQIREPRGSDITWTTSTPQEQLLLMTGNPPIPVGDIYSRWIILGLNKIVRMYSPVSILDIKQGPKEPFRDYVDRFFKALRAEQATQEVKGWMTET... | MENRWQVMIVWQVDRMRIRTWHSLVKHHIYISRRAKDWFYRHHYESRHPKISSEVHIPLGEARLVVRTYWGLQPGEKDWQLGHGVSIEWRLKRYSTQIDPDVADQLIHLHYFNCFSESAIRKAILGQVVSPRCDYQAGHNKVGSLQYLALKALVAPKKTKPPLPSVRKLAEDRWNKPQKTKGHRGSHTMNGH | MEQAPEDQGPQREPYNEWALELLEELKHEAVRHFPRMWLHGLGQHIYNTYGDTWEGVEAIIRTLQQLLFVHFRIGCQHSRIGIIRGRRVRDGSGRP | MDPVDPNLEPWNHPGSQPTTACSKCYCKMCCYHCPVCFLNKGLGISYGRKKRKRRRGTPQSSKDHQNPIPKQSIPQTQGVSTGPEESKK | MAGRSGNGDEELLKAVRIIKILYQSNPYPKPRGSRQARKNRRSRWRARQTQLD | MTPLEISAIVGLVVVSIIAIVVWTLVGIEYKRLLKQRKIDRLIQRIRERAEDSGNESEGDTDELAQLVEMGNYDLGDDNNL | MKVKGIQMNSHSLLRWGTMILGMIIICSAAEKTWVTVYYGVPVWKDAETTLFCASDAKAYKTEVHNVWATHACVPTDPNPQEMHLENVTEEFNMWKNNMVEQMHTDIIRLWDPSPQPCVKLTPLCVTLNCSYNITSNVTVDMNDTINMREEIKNCSFYTTTEIRDNRQKVYSLFYRLDIVPIGDRNNNHSYRLINCNTSAITQACPKVTFEPIPIHYCAPAGFAILKCNDKNFNGAGSCKNVSTVQCTHGIKPVVSTQLLLNGSLAENETMIRSENITNNVKNIIVQFNESVKINCTRPNNNTRKSVHIGPGQAFYATGE... | MGGKWSKSSRVGWREIRERMRQTPAAADGVGAVSQDLDKHGAIT | ATGGGTGCGAGAGCGTCAGTATTAAGTGGGGGAAAATTAGATGCATGGGAGAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGAATGAAACATCTAGTATGGGCAAGCAGGGAGCTGGAAAGATTCGCACTTAACCCTGGCCTGTTAGAAACAAAAGAAGGATGTCAACAAATAATGGAACAGTTACAATCAGCTCTCAATACAGGGACAAAAGAACTTAAATCATTATATAATGCAGTAGCAACCCTCTATTGTGTTCATCAAGGGATAGATGTAAAAGACACCAGGGAAGCTTCAGATAAAATAGAGGAAAT... |
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Dataset Description
Dataset Summary
This dataset was derived from the Los Alamos National Laboratory HIV sequence (LANL) database. It contains the most recent version (2016-Full-genome), composed of 1,609 high-quality full-length genomes. The genes within these sequences were processed using the GeneCutter tool and translated into corresponding amino acid sequences using the BioPython library Seq.translate function.
Supported Tasks and Leaderboards: None
Languages: English
Dataset Structure
Data Instances
Each column represents the protein amino acid sequence of the HIV genome. The ID field indicates the Genbank reference ID for future cross-referencing. There are 1,609 full length HIV genomes.
Data Fields: ID, gag, pol, env, nef, tat, rev, proteome
Data Splits: None
Dataset Creation
Curation Rationale: This dataset was curated to train a model (HIV-BERT) designed to predict a variety of sequence-dependent features regarding HIV.
Initial Data Collection and Normalization: Dataset was downloaded and curated on 12/21/2021.
Considerations for Using the Data
Social Impact of Dataset: This dataset can be used to study sequence-dependent features of HIV, a virus that has claimed the lives of many individuals globally in the last few decades.
Discussion of Biases: This dataset was derived from the Los Alamos National Laboratory HIV sequence (LANL) database full genome database and contains a representative sample from each subtype and geographic region.
Additional Information:
- Dataset Curators: Will Dampier
- Citation Information: TBA
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Models trained or fine-tuned on damlab/HIV_FLT