Datasets:

---

cskokgibbs

/

Supplemental-GRNs-and-Priors

like 0

Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 12 new columns ({'regulator', 'combined_confidences', 'precision', 'model_coefficient', 'gold_standard', 'F1', 'beta.sign.sum', 'recall', 'var.exp.median', 'model_exp_var', 'prior', 'MCC'}) and 443 missing columns ({'SIRT6', 'TBX20', 'NFIL3', 'GATA4', 'SMARCA1', 'ZIC3', 'RXRA', 'IRF1', 'ETV3', 'TBP', 'ZSCAN22', 'ZNF708', 'YY1', 'NR3C1', 'BRCA1', 'ZNF431', 'ZKSCAN4', 'NFIC', 'CEBPG', 'NFE2L2', 'RFX5', 'MYEF2', 'EWSR1', 'FOXH1', 'SREBF1', 'NFE2L1', 'ELF3', 'VEZF1', 'HDX', 'STAT5B', 'HNF1B', 'MAFF', 'EPAS1', 'E2F6', 'KLF12', 'RFX2', 'ZFP82', 'PITX1', 'KLF8', 'SP8', 'MAZ', 'PPARGC1A', 'HNF4A', 'TGIF2', 'CBX5', 'ZSCAN10', 'SALL4', 'ZNF549', 'CREB3L1', 'ZNF75A', 'E2F2', 'STAT6', 'MSX2', 'GZF1', 'NR2F6', 'ZNF85', 'FOXA2', 'FOXN3', 'ATF6B', 'ZNF250', 'DMRTA1', 'TCFL5', 'SP4', 'NRF1', 'SMARCC1', 'GATA5', 'ZNF260', 'KLF5', 'ZNF502', 'STAT3', 'NFKB2', 'NF1', 'RREB1', 'THAP1', 'USF2', 'ZSCAN31', 'GLI2', 'E2F3', 'CREBZF', 'BCL11A', 'ZNF329', 'ENO1', 'FOXP4', 'ZNF528', 'KLF6', 'CREM', 'ETV5', 'BHLHE40', 'MEF2A', 'PURA', 'ZNF563', 'MZF1', 'MGA', 'ZNF770', 'LHX1', 'MYC', 'CREB3L4', 'IKZF2', 'CXXC1', 'PATZ1', 'OVOL1', 'ZNF394', 'NFATC3', 'HERPUD1', 'POLR3G', 'GRHL2', 'ZNF582', 'FOXP1', 'ZNF423', 'ZNF667', 'CREB3L3', 'EZH2', 'ZFP42', 'RXRB', 'ZNF219', 'SNAI1', 'NFYA', 'MTF1', 'ZNF35', 'JUN', 'TERF2', 'NFIB', 'FOXN2', 'ZBTB17', 'ID3', 'NR4A1', 'ETV6', 'MXI1', 'HSF2', 'ZNF320', 'KLF3', 'IKZF4', 'TCF4', 'FOXO1', 'ELF1', 'SP100', 'IRF7', 'ZSCAN26', 'ELK1', 'ATF4', 'ZNF322', 'SRF', 'ZBTB48', 'KLF7', 'PTEN', 'ZNF382', 'HIVEP2', 'CUX1', 'SMARCA5', 'ZIC5', 'NR1I3', 'YBX1', 'CCNT2', 'ZNF418', 'ARNTL', 'ZNF586', 'ESRRG', 'ZNF449', 'THRB', 'CREB3L2', 'ZNF691', 'GABPA', 'HMGA1', 'ZNF76', 'MEF2C', 'SOX9', 'PBX1', 'TC
...
RRA', 'NR5A2', 'HIVEP1', 'HLTF', 'NKX3.1', 'ZNF8', 'ARID5B', 'CDX2', 'ZNF490', 'MAFG', 'FOSB', 'ATF3', 'ARID3B', 'PROX1', 'TFE3', 'FUBP1', 'AFP', 'ELK4', 'MITF', 'MAFB', 'E2F5', 'RARA', 'ID4', 'TFAP2C', 'BDP1', 'ZNF146', 'EOMES', 'REST', 'SOX11', 'HOMEZ', 'ZFX', 'ATF5', 'RELA', 'STAT1', 'RFX7', 'MEF2D', 'ZNF18', 'HIF1A', 'ARID2', 'ATF6', 'HSF1', 'GLIS3', 'MYBL2', 'PPARD', 'RUNX2', 'ID2', 'CTCF', 'ZBTB4', 'ZNF350', 'ZKSCAN1', 'MBD1', 'ZNF143', 'HESX1', 'ZNF354A', 'CREB1', 'ZNF165', 'SOX13', 'ZNF652', 'ZNF547', 'UBP1', 'SP3', 'ISX', 'NFKB1', 'NFAT5', 'ZNF410', 'MEIS1', 'ZNF331', 'THAP11', 'RAD21', 'NR6A1', 'ATF7', 'TCF12', 'NFATC2', 'FOSL1', 'ZBTB16', 'ZNF121', 'SOX2', 'OTX2', 'ETS1', 'ZNF75D', 'KLF13', 'BBX', 'POU5F1B', 'IRF3', 'PLAG1', 'EGR1', 'NR1H2', 'BCL3', 'BATF3', 'WRNIP1', 'ZIC2', 'MAX', 'SIN3A', 'E4F1', 'SOX17', 'TEAD2', 'VENTX', 'GRHL1', 'ELF2', 'NFIA', 'TFCP2', 'ZBTB1', 'HES1', 'SOX15', 'ZNF263', 'TCF7', 'HINFP', 'ZBTB33', 'ZNF680', 'ZNF282', 'SMAD1', 'RARG', 'TFDP2', 'MBD2', 'ZNF214', 'PRDM14', 'CREB3', 'TBX3', 'FOXO3', 'CHD2', 'PLAGL1', 'RFX3', 'NR2C2', 'SREBF2', 'RBPJ', 'ZNF264', 'FOXK1', 'IRF9', 'MLX', 'TEAD4', 'KLF10', 'ELK3', 'SP1', 'PAX6', 'ARNTL2', 'TFCP2L1', 'PPARA', 'ATF1', 'MBTPS2', 'RARB', 'TP53', 'CLOCK', 'PHF21A', 'ZNF24', 'ZBED1', 'ETV1', 'FOS', 'FOXA1', 'PITX2', 'TFDP1', 'PBX3', 'SETDB1', 'ZBTB18', 'ZNF589', 'DBP', 'SMAD4', 'CEBPD', 'ZNF136', 'NFATC4', 'POLR2A', 'MLXIP', 'XBP1', 'ZNF740', 'TCF7L1', 'ZNF148', 'FOXJ2', 'MAF', 'PKNOX1', 'GTF2I', 'FOSL2'}).

This happened while the csv dataset builder was generating data using

/tmp/hf-datasets-cache/medium/datasets/75008009563908-config-parquet-and-info-cskokgibbs-Supplemental-G-f3f16d29/hub/datasets--cskokgibbs--Supplemental-GRNs-and-Priors/snapshots/7a44c2b893f63ff2245a6b94a0963d9d84e5a951/CellOracle_HepG2_GRN/network.tsv.gz

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1831, in _prepare_split_single
                  writer.write_table(table)
                File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 714, in write_table
                  pa_table = table_cast(pa_table, self._schema)
                             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2272, in table_cast
                  return cast_table_to_schema(table, schema)
                         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2218, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              target: string
              regulator: string
              combined_confidences: double
              gold_standard: double
              precision: double
              recall: double
              MCC: double
              F1: double
              prior: double
              model_coefficient: double
              model_exp_var: double
              beta.sign.sum: double
              var.exp.median: double
              -- schema metadata --
              pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 1834
              to
              {'target': Value('string'), 'AFP': Value('float64'), 'AHR': Value('float64'), 'ARHGEF12': Value('float64'), 'ARID2': Value('float64'), 'ARID3A': Value('float64'), 'ARID3B': Value('float64'), 'ARID5B': Value('float64'), 'ARNT': Value('float64'), 'ARNT2': Value('float64'), 'ARNTL': Value('float64'), 'ARNTL2': Value('float64'), 'ATF1': Value('float64'), 'ATF2': Value('float64'), 'ATF3': Value('float64'), 'ATF4': Value('float64'), 'ATF5': Value('float64'), 'ATF6': Value('float64'), 'ATF6B': Value('float64'), 'ATF7': Value('float64'), 'BACH1': Value('float64'), 'BATF3': Value('float64'), 'BBX': Value('float64'), 'BCL11A': Value('float64'), 'BCL11B': Value('float64'), 'BCL3': Value('float64'), 'BCL6': Value('float64'), 'BCLAF1': Value('float64'), 'BDP1': Value('float64'), 'BHLHE40': Value('float64'), 'BPTF': Value('float64'), 'BRCA1': Value('float64'), 'BRF1': Value('float64'), 'BRF2': Value('float64'), 'CBFB': Value('float64'), 'CBX5': Value('float64'), 'CCDC6': Value('float64'), 'CCNT2': Value('float64'), 'CDC5L': Value('float64'), 'CDX2': Value('float64'), 'CEBPA': Value('float64'), 'CEBPB': Value('float64'), 'CEBPD': Value('float64'), 'CEBPG': Value('float64'), 'CEBPZ': Value('float64'), 'CHD2': Value('float64'), 'CLOCK': Value('float64'), 'CREB1': Value('float64'), 'CREB3': Value('float64'), 'CREB3L1': Value('float64'), 'CREB3L2': Value('float64'), 'CREB3L3': Value('float64'), 'CREB3L4': Value('float64'), 'CREBZF': Value('float64'), 'CREM': Value('float64'), 'CTCF': Value('flo
              ...
              alue('float64'), 'ZNF24': Value('float64'), 'ZNF250': Value('float64'), 'ZNF260': Value('float64'), 'ZNF263': Value('float64'), 'ZNF264': Value('float64'), 'ZNF274': Value('float64'), 'ZNF281': Value('float64'), 'ZNF282': Value('float64'), 'ZNF317': Value('float64'), 'ZNF320': Value('float64'), 'ZNF322': Value('float64'), 'ZNF329': Value('float64'), 'ZNF331': Value('float64'), 'ZNF335': Value('float64'), 'ZNF35': Value('float64'), 'ZNF350': Value('float64'), 'ZNF354A': Value('float64'), 'ZNF382': Value('float64'), 'ZNF384': Value('float64'), 'ZNF394': Value('float64'), 'ZNF410': Value('float64'), 'ZNF418': Value('float64'), 'ZNF423': Value('float64'), 'ZNF431': Value('float64'), 'ZNF449': Value('float64'), 'ZNF490': Value('float64'), 'ZNF502': Value('float64'), 'ZNF528': Value('float64'), 'ZNF547': Value('float64'), 'ZNF549': Value('float64'), 'ZNF554': Value('float64'), 'ZNF563': Value('float64'), 'ZNF582': Value('float64'), 'ZNF586': Value('float64'), 'ZNF589': Value('float64'), 'ZNF652': Value('float64'), 'ZNF667': Value('float64'), 'ZNF680': Value('float64'), 'ZNF691': Value('float64'), 'ZNF708': Value('float64'), 'ZNF740': Value('float64'), 'ZNF75A': Value('float64'), 'ZNF75D': Value('float64'), 'ZNF76': Value('float64'), 'ZNF770': Value('float64'), 'ZNF8': Value('float64'), 'ZNF816': Value('float64'), 'ZNF85': Value('float64'), 'ZSCAN10': Value('float64'), 'ZSCAN16': Value('float64'), 'ZSCAN22': Value('float64'), 'ZSCAN26': Value('float64'), 'ZSCAN31': Value('float64')}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1455, in compute_config_parquet_and_info_response
                  parquet_operations = convert_to_parquet(builder)
                                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1054, in convert_to_parquet
                  builder.download_and_prepare(
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 894, in download_and_prepare
                  self._download_and_prepare(
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 970, in _download_and_prepare
                  self._prepare_split(split_generator, **prepare_split_kwargs)
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1702, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                                               ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1833, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 12 new columns ({'regulator', 'combined_confidences', 'precision', 'model_coefficient', 'gold_standard', 'F1', 'beta.sign.sum', 'recall', 'var.exp.median', 'model_exp_var', 'prior', 'MCC'}) and 443 missing columns ({'SIRT6', 'TBX20', 'NFIL3', 'GATA4', 'SMARCA1', 'ZIC3', 'RXRA', 'IRF1', 'ETV3', 'TBP', 'ZSCAN22', 'ZNF708', 'YY1', 'NR3C1', 'BRCA1', 'ZNF431', 'ZKSCAN4', 'NFIC', 'CEBPG', 'NFE2L2', 'RFX5', 'MYEF2', 'EWSR1', 'FOXH1', 'SREBF1', 'NFE2L1', 'ELF3', 'VEZF1', 'HDX', 'STAT5B', 'HNF1B', 'MAFF', 'EPAS1', 'E2F6', 'KLF12', 'RFX2', 'ZFP82', 'PITX1', 'KLF8', 'SP8', 'MAZ', 'PPARGC1A', 'HNF4A', 'TGIF2', 'CBX5', 'ZSCAN10', 'SALL4', 'ZNF549', 'CREB3L1', 'ZNF75A', 'E2F2', 'STAT6', 'MSX2', 'GZF1', 'NR2F6', 'ZNF85', 'FOXA2', 'FOXN3', 'ATF6B', 'ZNF250', 'DMRTA1', 'TCFL5', 'SP4', 'NRF1', 'SMARCC1', 'GATA5', 'ZNF260', 'KLF5', 'ZNF502', 'STAT3', 'NFKB2', 'NF1', 'RREB1', 'THAP1', 'USF2', 'ZSCAN31', 'GLI2', 'E2F3', 'CREBZF', 'BCL11A', 'ZNF329', 'ENO1', 'FOXP4', 'ZNF528', 'KLF6', 'CREM', 'ETV5', 'BHLHE40', 'MEF2A', 'PURA', 'ZNF563', 'MZF1', 'MGA', 'ZNF770', 'LHX1', 'MYC', 'CREB3L4', 'IKZF2', 'CXXC1', 'PATZ1', 'OVOL1', 'ZNF394', 'NFATC3', 'HERPUD1', 'POLR3G', 'GRHL2', 'ZNF582', 'FOXP1', 'ZNF423', 'ZNF667', 'CREB3L3', 'EZH2', 'ZFP42', 'RXRB', 'ZNF219', 'SNAI1', 'NFYA', 'MTF1', 'ZNF35', 'JUN', 'TERF2', 'NFIB', 'FOXN2', 'ZBTB17', 'ID3', 'NR4A1', 'ETV6', 'MXI1', 'HSF2', 'ZNF320', 'KLF3', 'IKZF4', 'TCF4', 'FOXO1', 'ELF1', 'SP100', 'IRF7', 'ZSCAN26', 'ELK1', 'ATF4', 'ZNF322', 'SRF', 'ZBTB48', 'KLF7', 'PTEN', 'ZNF382', 'HIVEP2', 'CUX1', 'SMARCA5', 'ZIC5', 'NR1I3', 'YBX1', 'CCNT2', 'ZNF418', 'ARNTL', 'ZNF586', 'ESRRG', 'ZNF449', 'THRB', 'CREB3L2', 'ZNF691', 'GABPA', 'HMGA1', 'ZNF76', 'MEF2C', 'SOX9', 'PBX1', 'TC
              ...
              RRA', 'NR5A2', 'HIVEP1', 'HLTF', 'NKX3.1', 'ZNF8', 'ARID5B', 'CDX2', 'ZNF490', 'MAFG', 'FOSB', 'ATF3', 'ARID3B', 'PROX1', 'TFE3', 'FUBP1', 'AFP', 'ELK4', 'MITF', 'MAFB', 'E2F5', 'RARA', 'ID4', 'TFAP2C', 'BDP1', 'ZNF146', 'EOMES', 'REST', 'SOX11', 'HOMEZ', 'ZFX', 'ATF5', 'RELA', 'STAT1', 'RFX7', 'MEF2D', 'ZNF18', 'HIF1A', 'ARID2', 'ATF6', 'HSF1', 'GLIS3', 'MYBL2', 'PPARD', 'RUNX2', 'ID2', 'CTCF', 'ZBTB4', 'ZNF350', 'ZKSCAN1', 'MBD1', 'ZNF143', 'HESX1', 'ZNF354A', 'CREB1', 'ZNF165', 'SOX13', 'ZNF652', 'ZNF547', 'UBP1', 'SP3', 'ISX', 'NFKB1', 'NFAT5', 'ZNF410', 'MEIS1', 'ZNF331', 'THAP11', 'RAD21', 'NR6A1', 'ATF7', 'TCF12', 'NFATC2', 'FOSL1', 'ZBTB16', 'ZNF121', 'SOX2', 'OTX2', 'ETS1', 'ZNF75D', 'KLF13', 'BBX', 'POU5F1B', 'IRF3', 'PLAG1', 'EGR1', 'NR1H2', 'BCL3', 'BATF3', 'WRNIP1', 'ZIC2', 'MAX', 'SIN3A', 'E4F1', 'SOX17', 'TEAD2', 'VENTX', 'GRHL1', 'ELF2', 'NFIA', 'TFCP2', 'ZBTB1', 'HES1', 'SOX15', 'ZNF263', 'TCF7', 'HINFP', 'ZBTB33', 'ZNF680', 'ZNF282', 'SMAD1', 'RARG', 'TFDP2', 'MBD2', 'ZNF214', 'PRDM14', 'CREB3', 'TBX3', 'FOXO3', 'CHD2', 'PLAGL1', 'RFX3', 'NR2C2', 'SREBF2', 'RBPJ', 'ZNF264', 'FOXK1', 'IRF9', 'MLX', 'TEAD4', 'KLF10', 'ELK3', 'SP1', 'PAX6', 'ARNTL2', 'TFCP2L1', 'PPARA', 'ATF1', 'MBTPS2', 'RARB', 'TP53', 'CLOCK', 'PHF21A', 'ZNF24', 'ZBED1', 'ETV1', 'FOS', 'FOXA1', 'PITX2', 'TFDP1', 'PBX3', 'SETDB1', 'ZBTB18', 'ZNF589', 'DBP', 'SMAD4', 'CEBPD', 'ZNF136', 'NFATC4', 'POLR2A', 'MLXIP', 'XBP1', 'ZNF740', 'TCF7L1', 'ZNF148', 'FOXJ2', 'MAF', 'PKNOX1', 'GTF2I', 'FOSL2'}).
              
              This happened while the csv dataset builder was generating data using
              
              /tmp/hf-datasets-cache/medium/datasets/75008009563908-config-parquet-and-info-cskokgibbs-Supplemental-G-f3f16d29/hub/datasets--cskokgibbs--Supplemental-GRNs-and-Priors/snapshots/7a44c2b893f63ff2245a6b94a0963d9d84e5a951/CellOracle_HepG2_GRN/network.tsv.gz
              
              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)