id stringlengths 1 2 | document_id stringlengths 10 11 | passages list | entities list | events list | coreferences list | relations list |
|---|---|---|---|---|---|---|
0 | pmcA1805739 | [
{
"id": "pmcA1805739__text",
"type": "Article",
"text": [
"Embryonic sympathoblasts transiently express TrkB in vivo and proliferate in response to brain-derived neurotrophic factor in vitro\nAbstract\nBackground\nNerve growth factor and neurotrophin-3 are involved in the development of sympatheti... | [
{
"id": "pmcA1805739__T0",
"type": "species",
"text": [
"chicken"
],
"offsets": [
[
644,
651
]
],
"normalized": [
{
"db_name": "ncbi",
"db_id": "9031"
}
]
},
{
"id": "pmcA1805739__T1",
"type": "species",
"t... | [] | [] | [] |
1 | pmcA1779441 | [
{
"id": "pmcA1779441__text",
"type": "Article",
"text": [
"Identification of a human peripheral blood monocyte subset that differentiates into osteoclasts\nAbstract\nIncreased bone resorption mediated by osteoclasts causes various diseases such as osteoporosis and bone erosion in rheumatoid arthri... | [
{
"id": "pmcA1779441__T0",
"type": "species",
"text": [
"human"
],
"offsets": [
[
20,
25
]
],
"normalized": [
{
"db_name": "ncbi",
"db_id": "9606"
}
]
},
{
"id": "pmcA1779441__T1",
"type": "species",
"text"... | [] | [] | [] |
2 | pmcA2556924 | [
{
"id": "pmcA2556924__text",
"type": "Article",
"text": [
"Are there sensitive subgroups for the effects of airborne particles?\nAbstract\nRecent studies have shown that particulate air pollution is a risk factor for hospitalization for heart and lung disease; however, little is known about what s... | [
{
"id": "pmcA2556924__T0",
"type": "species",
"text": [
"persons"
],
"offsets": [
[
567,
574
]
],
"normalized": [
{
"db_name": "ncbi",
"db_id": "9606"
}
]
},
{
"id": "pmcA2556924__T1",
"type": "species",
"t... | [] | [] | [] |
3 | pmcA1474674 | [
{
"id": "pmcA1474674__text",
"type": "Article",
"text": [
"Physiological and chemical characterization of cyanobacterial metallothioneins.\nAbstract\nTechniques have been developed for detection, quantitation, and isolation of bacterial metallothioneins (MTs) from cyanobacterial species. These met... | [
{
"id": "pmcA1474674__T0",
"type": "species",
"text": [
"cyanobacterial"
],
"offsets": [
[
47,
61
]
],
"normalized": [
{
"db_name": "ncbi",
"db_id": "1117"
}
]
},
{
"id": "pmcA1474674__T1",
"type": "species",
... | [] | [] | [] |
4 | pmcA2652712 | [{"id":"pmcA2652712__text","type":"Article","text":["Neurogenin2 Directs Granule Neuroblast Producti(...TRUNCATED) | [{"id":"pmcA2652712__T0","type":"species","text":["human"],"offsets":[[1424,1429]],"normalized":[{"d(...TRUNCATED) | [] | [] | [] |
5 | pmcA2365090 | [{"id":"pmcA2365090__text","type":"Article","text":["Carbonic Anhydrase Inhibitors. Part 541: Metal (...TRUNCATED) | [{"id":"pmcA2365090__T0","type":"species","text":["rabbits"],"offsets":[[893,900]],"normalized":[{"d(...TRUNCATED) | [] | [] | [] |
6 | pmcA2327290 | [{"id":"pmcA2327290__text","type":"Article","text":["Borrelia burgdorferi membranes are the primary (...TRUNCATED) | [{"id":"pmcA2327290__T0","type":"species","text":["Borrelia burgdorferi"],"offsets":[[0,20]],"normal(...TRUNCATED) | [] | [] | [] |
7 | pmcA1257442 | [{"id":"pmcA1257442__text","type":"Article","text":["Identification of kinectin as a novel Behçet's(...TRUNCATED) | [{"id":"pmcA1257442__T0","type":"species","text":["patients"],"offsets":[[325,333]],"normalized":[{"(...TRUNCATED) | [] | [] | [] |
8 | pmcA2658668 | [{"id":"pmcA2658668__text","type":"Article","text":["A novel DNA-binding protein modulating methicil(...TRUNCATED) | [{"id":"pmcA2658668__T0","type":"species","text":["Staphylococcus aureus"],"offsets":[[65,86]],"norm(...TRUNCATED) | [] | [] | [] |
9 | pmcA335194 | [{"id":"pmcA335194__text","type":"Article","text":["The Caenorhabditis elegans genome contains monom(...TRUNCATED) | [{"id":"pmcA335194__T0","type":"species","text":["Caenorhabditis elegans"],"offsets":[[4,26]],"norma(...TRUNCATED) | [] | [] | [] |
End of preview. Expand in Data Studio
Dataset Card for LINNAEUS
Linnaeus is a novel corpus of full-text documents manually annotated for species mentions.
Citation Information
@Article{gerner2010linnaeus,
title={LINNAEUS: a species name identification system for biomedical literature},
author={Gerner, Martin and Nenadic, Goran and Bergman, Casey M},
journal={BMC bioinformatics},
volume={11},
number={1},
pages={1--17},
year={2010},
publisher={BioMed Central}
}
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