Zer0pa/Synthetic-Biology-archive

Canonical source of truth: github.com/Zer0pa/Synthetic-Biology Mirror of GitHub HEAD: 258b4db12dc93bda6d775c97890327345bd75a2d on main (2026-05-08T15:13:22Z) Mirror created: 2026-05-13Z License: Zer0pa SAL v7.1 — see canonical LICENSE on GitHub.

What this is

The HF durability mirror for the Synthetic-Biology lane: an in-silico metabolic-pathway-engineering pipeline (L1→L7) for biosynthesis routes to human-milk oligosaccharides (2'-FL, 3'-SL, DSLNT) in E. coli iML1515.

Truth posture (claim-surface repair in progress):

• Structural audit passes 3/3 HMO targets under synbio audit verify
• 256 CPU tests, 23-falsifier registry, zer0pa-synbio v0.1 on PyPI
• Committed HMO evidence packets at validation/hmo-seed-evidence/{2pFL,3pSL,DSLNT}/RESULT.md report scientific_valid: False and stub mode
• Scientific HMO validation is NOT claimed at v0.1; the structural-audit conformance is real; scientific validity is in claim-surface repair
• Wet-lab dispatch is triple-gated, never on the cutover path

Sister remotes

Remote	URL	Contents
GitHub (canonical)	https://github.com/Zer0pa/Synthetic-Biology	code, README, tests, audit/, validation/, kg/
PyPI	https://pypi.org/project/zer0pa-synbio/0.1.0/	zer0pa-synbio v0.1.0 (sdist + wheel, OIDC trusted publish)
HF model (private)	https://huggingface.co/Architect-Prime/synbio-cekm-v0.1	CEKM v0.1 checkpoints (step 1500/18000/19000 + audit JSONL, 19.2 GB; private per prior IP decision)
HF dataset (this)	https://huggingface.co/datasets/Zer0pa/Synthetic-Biology-archive	landing-card receipts, product-page build artifacts, post-2026-05-08 snapshots

Contents

• product-page/ — Day-9 product-page wave build artifacts (HOLD-NARROWED draft pending operator ship adjudication per FPO PROMPT_LANE_AGENT_PRODUCT_PAGE_2026-05-09.md §8 + FPO_DISPATCH_BRIEF_PRODUCT_PAGE_2026-05-09.md §C.2.852).
  • index.html — locked ZPE-XR template populated for synbio (16 lane-owned cells; external 01/02/03 + 09 block placeheld per §0.1)
  • product-page-full-1440.png — 1440×2965 desktop full-page render
  • product-page-top-crop.png — hero + 01/02/03 + 04 region
  • product-page-insight-benchmark-crop.png — 04 + 05.x + 06 + 06.1 region
  • product-page-possibility-crop.png — 09 block + 5 unlock placeholders
  • product-page-mobile-414.png — 414×7588 mobile single-column stack
  • product-page-audit.json — Pretext state + console count + non-live-green count + §C.3.878 exception receipt + structural parity check against the locked ZPE-XR reference at :8765

Provenance anchor

This dataset is the HF disaster-recovery target for the Synthetic-Biology lane. After a local-disk wipe, this dataset + the GitHub repo at commit 258b4db1 together suffice to resume the lane.

The CEKM v0.1 model weights remain at Architect-Prime/synbio-cekm-v0.1 (private) — that model's privacy mirrors its prior IP-decision posture and is not flipped by this durability pass.