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HuggingFaceBio
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random-promoter-dream-2022

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Tags:
biology
dna
genomics
promoter
gene-expression
carbon
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subset
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item_id
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5
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all_random_seqs
-1
test_subset_ids/all_random_seqs.csv
0
,Unnamed: 0,tag,sequence,pos,exp
all_random_seqs
0
0
test_subset_ids/all_random_seqs.csv
1
0,0,HQ_28,TGCATTTTTTTCACATCAAAAGTAGGTTCTTGCAGCATTCTGATGCACGTATAGGCGCGATGGATGGCAGCGGGAATGCGGTTAAGCGGTGGATCAAGGTTACGGCTGTT,590,
all_random_seqs
1
1
test_subset_ids/all_random_seqs.csv
2
1,1,HQ_30,TGCATTTTTTTCACATCAAAAGTTGTGTGAGAGGGGACCCATTAGTGTTGATCTAAGTGAGCCTGTCCTTACGTTTGGGTAACGGGGTCACACGGAGGGTTACGGCTGTT,655,
all_random_seqs
2
2
test_subset_ids/all_random_seqs.csv
3
2,2,HQ_32,TGCATTTTTTTCACATCAAAAGTTTCAACTCACCCGTCACTTCGTATGTGAGGATCGCGTTCTTTTAGAAGGGAGTGGATTCGGCGGGGGTCGTGGCGGTTACGGCTGTT,656,
all_random_seqs
3
3
test_subset_ids/all_random_seqs.csv
4
3,3,HQ_35,TGCATTTTTTTCACATCAAAATTATGCGGGGGCTGATAACGATCAAGCGGGAGTATGAGTTCACGGGTCGCAGCACTACTGCTAGCTACGTTGGTGCGGTTACGGCTGTT,840,
all_random_seqs
4
4
test_subset_ids/all_random_seqs.csv
5
4,4,HQ_36,TGCATTTTTTTCACATCAAAATTGGGAGTGGATCATACCTTTAGTACGTACCCGATCGTATCCCGGTAATTCGTATATAGATCATAGCGGGGTTGGAGGTTACGGCTGTT,845,
all_random_seqs
5
5
test_subset_ids/all_random_seqs.csv
6
5,5,HQ_37,TGCATTTTTTTCACATCAAACAATGGTCTGTGACGAGGTACTCGTTCGGCCGCCGTACTCAAACTTATTCACCCTTGAAAGGGGAGGCGGGGTGCTGGGTTACGGCTGTT,961,
all_random_seqs
6
6
test_subset_ids/all_random_seqs.csv
7
6,6,HQ_38,TGCATTTTTTTCACATCAAACACGTACTATTGCGTGGTACGAGGCGCAACTGACGGGGAGTTCACGCGGCCTCGTTGGGGAGCGTCCTCTAACGTATGGTTACGGCTGTT,969,
all_random_seqs
7
7
test_subset_ids/all_random_seqs.csv
8
7,7,HQ_41,TGCATTTTTTTCACATCAAACAGGGTCGAGGGGAGCTGAGTGCGGTTTCTAACATCAGGTTGTGTTTTGCTCGAGTAACATGTTGGAACGTGGTCTTGGTTACGGCTGTT,980,
all_random_seqs
8
8
test_subset_ids/all_random_seqs.csv
9
8,8,HQ_42,TGCATTTTTTTCACATCAAACATAGGTAGGGGATAACAGAAAGATTGTTTTGGACATACGCCGGTTAGAAGTACTGGAACACATATTGTTAAAACTAGGTTACGGCTGTT,984,
all_random_seqs
9
9
test_subset_ids/all_random_seqs.csv
10
9,9,HQ_44,TGCATTTTTTTCACATCAAACATTTACATATCGCCTTTAGCACAATTATTTTAATTAGTATGGTTCTTTATTGGGATTGCAATGGAATAGTTACTATGGTTACGGCTGTT,985,
all_random_seqs
10
10
test_subset_ids/all_random_seqs.csv
11
10,10,HQ_47,TGCATTTTTTTCACATCAAACCGTAGTATGTCAACAGTTCATGGGTAGGGGACCTCGTTGTAGGATCGCCTCCGAACTCATAGAGTCTCAAGATGCGGGTTACGGCTGTT,993,
all_random_seqs
11
11
test_subset_ids/all_random_seqs.csv
12
11,11,HQ_48,TGCATTTTTTTCACATCAAACCGTTTCGTCAAAGGGACCCGCATTGCTTCGTACGCAATCGGTAGATCTGCTCTCCTAGCACTCCTGCTGGCGCGTAGGTTACGGCTGTT,1003,
all_random_seqs
12
12
test_subset_ids/all_random_seqs.csv
13
12,12,HQ_50,TGCATTTTTTTCACATCAAACGGATGTTACTTTCTGGGATCCCCCATGAACGCGACTGCCTATCCGGCCAGTCATAGGTTTAGGGCGCTCTAAACGAGGTTACGGCTGTT,1031,
all_random_seqs
13
13
test_subset_ids/all_random_seqs.csv
14
13,13,HQ_51,TGCATTTTTTTCACATCAAACGGCTCAGCCGATCGCGAACGCTGTGGGGGATTCGTGGGCGCGATTGGGGCGCAAACGGGGCGGGGTCGCAAGCGCTGGTTACGGCTGTT,1058,
all_random_seqs
14
14
test_subset_ids/all_random_seqs.csv
15
14,14,HQ_52,TGCATTTTTTTCACATCAAACGGGGTCAATGTGGCACTTTTCGCGGGGGCGACGCAGTGTCGGGTTCGGTCGTGCGCGCAGGCGTCGCCGGAGAACAGGTTACGGCTGTT,1059,
all_random_seqs
15
15
test_subset_ids/all_random_seqs.csv
16
15,15,HQ_54,TGCATTTTTTTCACATCAAACGGTATTTAACTACATCGGACCGCGCCACTCGGTTAGAACCGGTTAGGTAGGGGCCTCCTAGAAGAACAAGGTTGGTGGTTACGGCTGTT,1060,
all_random_seqs
16
16
test_subset_ids/all_random_seqs.csv
17
16,16,HQ_55,TGCATTTTTTTCACATCAAACGTATTGACATCTTCAGTGACTTTCGGGGGTGCCGATATAGGGGGCCTAGTCTGGCATCGCGCGGTGGCGTGGTCGGGGTTACGGCTGTT,1061,
all_random_seqs
17
17
test_subset_ids/all_random_seqs.csv
18
17,17,HQ_56,TGCATTTTTTTCACATCAAACGTGGAAGCCCGCATAATCAATTCTTTGCAAGGTTCTGTGCTAGCATGGAGTTTCTTCACGGGGATGTTCCAGGGTAGGTTACGGCTGTT,1063,
all_random_seqs
18
18
test_subset_ids/all_random_seqs.csv
19
18,18,HQ_57,TGCATTTTTTTCACATCAAACTAAGATGGGTGCGAGCTGGGTAAGACGGTCATGGAATTTTTGGGGTGTCAGTGCCCCGCGTGTAAACGTAGCGCTCGGTTACGGCTGTT,1077,
all_random_seqs
19
19
test_subset_ids/all_random_seqs.csv
20
19,19,HQ_59,TGCATTTTTTTCACATCAAACTCCGGTCCGCTTCGCCGCATCTAAGGTCCTGGTCATTCCAGTGGGTAGACCTCGTGGATGCACCTTCTTCGTAATAGGTTACGGCTGTT,1090,
all_random_seqs
20
20
test_subset_ids/all_random_seqs.csv
21
20,20,HQ_60,TGCATTTTTTTCACATCAAACTCGCGTGACTCATGCCGTTAATACTTGTTTTTATCGGGGATACCTCTTAGGCATTTTCGTCTGGACCAGCGAGATCGGTTACGGCTGTT,1091,
all_random_seqs
21
21
test_subset_ids/all_random_seqs.csv
22
21,21,HQ_63,TGCATTTTTTTCACATCAAACTTTACCTGTTATGTATGCGTGCGGGGGCATGAGCCGGAAAGGGTTACTAGTCTGGGATATATTCGCGCAGTTCGGAGGTTACGGCTGTT,1207,
all_random_seqs
22
22
test_subset_ids/all_random_seqs.csv
23
22,22,HQ_65,TGCATTTTTTTCACATCAAAGAAACCTTCTTATTAAAATGCGTTCTGGTTTTACAAATTGATTACTACCACGTGCGTGCGCCTTGAGTCGGTGGCTAGGTTACGGCTGTT,1211,
all_random_seqs
23
23
test_subset_ids/all_random_seqs.csv
24
23,23,HQ_70,TGCATTTTTTTCACATCAAAGAGTTTTCGAGGTAATGTCACTTGGAAGCAGTTTCTAGATTTGGTATAAAGTGGAAGATTTAATGAAGAGGGATAGCGGTTACGGCTGTT,1241,
all_random_seqs
24
24
test_subset_ids/all_random_seqs.csv
25
24,24,HQ_75,TGCATTTTTTTCACATCAAAGCGGAAGGTCCGGAGACCGCCATCGCGGTCTGTTGGAGGTTCGTGGACACGTACCGGTATGAGTGGCCCAAATTTCGGGTTACGGCTGTT,1345,
all_random_seqs
25
25
test_subset_ids/all_random_seqs.csv
26
25,25,HQ_76,TGCATTTTTTTCACATCAAAGCGTTCGTAGAAAACCGTCCGGCGAGGGGACGCCGCCAGGGAATTTGCTGAGTCGTCCGCCAAAGAACGTGCGCGGGGGTTACGGCTGTT,1347,
all_random_seqs
26
26
test_subset_ids/all_random_seqs.csv
27
26,26,HQ_77,TGCATTTTTTTCACATCAAAGCTTAGAATTAATAAGGATTTTATGTGTGATTATGAGAGAGGGGTTGGGGTAAGCGTGAGGATGTGTGGGGGGTCCGGGTTACGGCTGTT,1356,
all_random_seqs
27
27
test_subset_ids/all_random_seqs.csv
28
27,27,HQ_78,TGCATTTTTTTCACATCAAAGCTTGAATGAGTTATGGCTGGTTCGTGGGGGGGTGCACCGTGTGGTAATGCTCGTGCCCGTGGATCGATCGAGGTTTGGTTACGGCTGTT,1357,
all_random_seqs
28
28
test_subset_ids/all_random_seqs.csv
29
28,28,HQ_79,TGCATTTTTTTCACATCAAAGGACATAGTGGCTTGATGCGATTGCAGGCGAAGGGGAGCAGTAGGTGTCGACTTCGCCGTAGATGGTGTACACGCGGGGTTACGGCTGTT,1366,
all_random_seqs
29
29
test_subset_ids/all_random_seqs.csv
30
29,29,HQ_81,TGCATTTTTTTCACATCAAAGGCCGCAAACATAAGTTGCAGTTTTCATTTTAGCACCCCACGCTGAACTAGCGTACGGAGAAGGGGAGAAGCTGGCAGGTTACGGCTGTT,1374,
all_random_seqs
30
30
test_subset_ids/all_random_seqs.csv
31
30,30,HQ_84,TGCATTTTTTTCACATCAAAGGGGACTGTCTCATATTAAGTTCCGAGGTCATGTTGAGTCGGGAGTTAGCCTTGTGTATGCAGGGCGTACCGACGGTGGTTACGGCTGTT,1382,
all_random_seqs
31
31
test_subset_ids/all_random_seqs.csv
32
31,31,HQ_85,TGCATTTTTTTCACATCAAAGGGGGTAGGTTAAGGCTAAGTGTATTAATTGGTTTCTGGGTGTCAGAGGGGCCGTGGTTCATACGGAAGGCTTGCGCGGTTACGGCTGTT,1384,
all_random_seqs
32
32
test_subset_ids/all_random_seqs.csv
33
32,32,HQ_87,TGCATTTTTTTCACATCAAAGGTTGGGGCACTTTGAGGACTTTCCTCGGCCGCACGGAGAAGTTCATCTATTTAAACTAGAATCCTGCTGGGGGCACGGTTACGGCTGTT,1392,
all_random_seqs
33
33
test_subset_ids/all_random_seqs.csv
34
33,33,HQ_90,TGCATTTTTTTCACATCAAAGTAGGTTTTGGGGCGAAATGTCTTTACCCGTTATCCTAGTAGTGAGGTTTGTGTGGACTGTGGAGTAAGTATAAATGGGTTACGGCTGTT,1403,
all_random_seqs
34
34
test_subset_ids/all_random_seqs.csv
35
34,34,HQ_91,TGCATTTTTTTCACATCAAAGTAGTTGACTAAGTGAAAGGGAGTCGTGAGTTTGGATTATGATTGTATTAAGTGGTGAACCTGAGATATCGGCGACCGGTTACGGCTGTT,1404,
all_random_seqs
35
35
test_subset_ids/all_random_seqs.csv
36
35,35,HQ_98,TGCATTTTTTTCACATCAAAGTGTGGTTAGGAAAGTATCGCGTCTAGTGCGCGTGGGTCCACATAGATGTCACGGGGGGTCGGTCAATTTCTGACCTGGTTACGGCTGTT,1437,
all_random_seqs
36
36
test_subset_ids/all_random_seqs.csv
37
36,36,HQ_99,TGCATTTTTTTCACATCAAAGTGTGTCGGGGTTAAATCAAAGGCTACGACTAGGAGACAGGCCGTGGCGGAAAGCTATACGGGCGGGCCCAACTTGGGGTTACGGCTGTT,1438,
all_random_seqs
37
37
test_subset_ids/all_random_seqs.csv
38
37,37,HQ_105,TGCATTTTTTTCACATCAAATAAGGGTATTTTGTCATCTCAGGAGGTGTGGGTGAGCAGGTCTGTTAGTATTCGGGCTAGGCCAGGATCCGTTCGGTGGTTACGGCTGTT,1496,
all_random_seqs
38
38
test_subset_ids/all_random_seqs.csv
39
38,38,HQ_106,TGCATTTTTTTCACATCAAATAATCAAAAACTTTGTAACAAACTAGGCCAATCCTCAGCAGCATAACCTGTGGATGCATACATTGAAAAGATACCGGGGTTACGGCTGTT,1502,
all_random_seqs
39
39
test_subset_ids/all_random_seqs.csv
40
39,39,HQ_109,TGCATTTTTTTCACATCAAATATGCGAAGGCACAAGAAGAAACTAATTCACTTCGATAAGTTTCTTATAATGCGTTCGACCTAATAAGCTACGGATGGGTTACGGCTGTT,1534,
all_random_seqs
40
40
test_subset_ids/all_random_seqs.csv
41
40,40,HQ_110,TGCATTTTTTTCACATCAAATATTCGTTTGTTAAGGATACGTATTGCTGAATAACCGATTCTACTGGCGTTTCACAGAACCCGGTCGTTACAGCGGCGGTTACGGCTGTT,1549,
all_random_seqs
41
41
test_subset_ids/all_random_seqs.csv
42
41,41,HQ_111,TGCATTTTTTTCACATCAAATCAATGAGATGCTGGTAGCATCAAGTGCGTGTGGGGACCTTGTAACGCATTGGCTAGGAAGAGCGCGCTGCGGTCCGGGTTACGGCTGTT,1582,
all_random_seqs
42
42
test_subset_ids/all_random_seqs.csv
43
42,42,HQ_112,TGCATTTTTTTCACATCAAATCATGAGCTAATTTTTGCCCTCTAGTTTTCCCTTGAGTAGTGCAGTGGGCGTCGCCCCTTACTTTGCTCGCCCGGCAGGTTACGGCTGTT,1583,
all_random_seqs
43
43
test_subset_ids/all_random_seqs.csv
44
43,43,HQ_117,TGCATTTTTTTCACATCAAATCTGCAGAACTTTATCAAGGAGTACACCGTATTTTGCTGACTGGTCTGTGGTTAACTTATAGTCTGTGTCTTGGGGTGGTTACGGCTGTT,1594,
all_random_seqs
44
44
test_subset_ids/all_random_seqs.csv
45
44,44,HQ_118,TGCATTTTTTTCACATCAAATCTGCATACGTATTGCGCGAGGCATCAGATTGTAGTTAAGGTTATGCACCTTAGCGGTACACAACACAACGGTAACTGGTTACGGCTGTT,1595,
all_random_seqs
45
45
test_subset_ids/all_random_seqs.csv
46
45,45,HQ_123,TGCATTTTTTTCACATCAAATGTGCGACAATTTGGACTCCCAGTGGTTTTTGTTGTTTGGCTTAGTGTGTCTGCGCACAAAGAATTGCCCGGGGAAAGGTTACGGCTGTT,1687,
all_random_seqs
46
46
test_subset_ids/all_random_seqs.csv
47
46,46,HQ_124,TGCATTTTTTTCACATCAAATGTTTTTCAGAGGGTAGGGGGGCCTATACGGTTGCGTTTGTTCGCGCCCTTCATTATCTCCTTAAAACCAGATCAATGGTTACGGCTGTT,1689,
all_random_seqs
47
47
test_subset_ids/all_random_seqs.csv
48
47,47,HQ_126,TGCATTTTTTTCACATCAAATTAGTATTTATTAACTTTCTTAAGATGATAGTCAGGGCAGTAGGCGTGCGATCCGCTAGAGGTACTCTATAGTATTGGGTTACGGCTGTT,1754,
all_random_seqs
48
48
test_subset_ids/all_random_seqs.csv
49
48,48,HQ_127,TGCATTTTTTTCACATCAAATTCTGTGTGGGTGGGTATGTGGACTAGTTCTGACTGGTAGCTCAATAGGCGTGATCTCTTTGCGTTTGCTTTGCTATGGTTACGGCTGTT,1773,
all_random_seqs
49
49
test_subset_ids/all_random_seqs.csv
50
49,49,HQ_129,TGCATTTTTTTCACATCAAATTGGTAAAACTAACGGCGACTGGTAAACTCGAAATTTGGCTCCTGATTCCGTATTCGGATTCTAAACCGCAAGGATAGGTTACGGCTGTT,1782,
all_random_seqs
50
50
test_subset_ids/all_random_seqs.csv
51
50,50,HQ_130,TGCATTTTTTTCACATCAAATTGGTCTTTTTCGACTGAGTAGTGTTTGCACACGTAAATATGAGAGAACATAGTAGGTTGTTATGGGGCGATCCGGGGGTTACGGCTGTT,1784,
all_random_seqs
51
51
test_subset_ids/all_random_seqs.csv
52
51,51,HQ_131,TGCATTTTTTTCACATCAAATTGTTACCTGTAGTCTATGTCAGGGAGTCGGAGTAGGACGAGTAACGGTATGAAGAGTTGGCTAAATGGTTCCCCCAGGTTACGGCTGTT,1786,
all_random_seqs
52
52
test_subset_ids/all_random_seqs.csv
53
52,52,HQ_138,TGCATTTTTTTCACATCAACAAAAAATGGGTGAAGAAGTGGGTGATTTAGGCGTATGTTGTGTATTGCTACCGGAGTGCGTGTATCGCTGAGAGGTAGGTTACGGCTGTT,1823,
all_random_seqs
53
53
test_subset_ids/all_random_seqs.csv
54
53,53,HQ_139,TGCATTTTTTTCACATCAACAAGGAGATCGTTTGTAGCGGCATCAATCGCAGAAATCACACTAAGGACCATAAAGCAAGGTCAGACAGGTCCAGAACGGTTACGGCTGTT,1844,
all_random_seqs
54
54
test_subset_ids/all_random_seqs.csv
55
54,54,HQ_140,TGCATTTTTTTCACATCAACACAAAGTAGCGTCCATATTTGTGGTGGTTGCTATACTAACTATTTGGCCGTGTCAATTAATGGGTAAGAGTGGAGGAGGTTACGGCTGTT,1890,
all_random_seqs
55
55
test_subset_ids/all_random_seqs.csv
56
55,55,HQ_142,TGCATTTTTTTCACATCAACACAGGGGAGACTCGGAAGGATGAGGAGGAGGCGTGAGCAAGCAGTGACTTGGCAATAGTAGATAGTAAAATCGTGGAGGTTACGGCTGTT,1893,
all_random_seqs
56
56
test_subset_ids/all_random_seqs.csv
57
56,56,HQ_143,TGCATTTTTTTCACATCAACACGTGCATGTGTGTATAACCTTCAGAATCTACACAGCCTAGTAGGCATTGAACCACCAGTAACTGCAGATTTATTAGGGTTACGGCTGTT,1928,
all_random_seqs
57
57
test_subset_ids/all_random_seqs.csv
58
57,57,HQ_145,TGCATTTTTTTCACATCAACAGGGAAGTGGTCAGGCCGACGATGCCTGCAGACGAGTTTGGCGTGGGCGGGCATAAGGCGCTCAAGGGGGGGGCACAGGTTACGGCTGTT,1949,
all_random_seqs
58
58
test_subset_ids/all_random_seqs.csv
59
58,58,HQ_147,TGCATTTTTTTCACATCAACAGTGAAATTGCAACGTGAATTAAGGTAGACGCGTAGGGAACGCCTGCTGAGAGTTAACCGGTTTAGCGGTGCTGATAGGTTACGGCTGTT,1953,
all_random_seqs
59
59
test_subset_ids/all_random_seqs.csv
60
59,59,HQ_149,TGCATTTTTTTCACATCAACAGTTTCTTCGCCTTATTTACTTAGTCTAAATGTATCTCTCACGGAGGTGTTTATCTCCAGGGCAGTCAGTCGTTTCAGGTTACGGCTGTT,1954,
all_random_seqs
60
60
test_subset_ids/all_random_seqs.csv
61
60,60,HQ_150,TGCATTTTTTTCACATCAACATCACAATTTTGTCATGTTATTCGCAGGAATCATTCCGCGCATCTAGGCTTGCACGGGGCACTAGAGATATTACTGGGGTTACGGCTGTT,1976,
all_random_seqs
61
61
test_subset_ids/all_random_seqs.csv
62
61,61,HQ_151,TGCATTTTTTTCACATCAACATGTCTCACCGTAGGCGTAAGCAACGCCAGCACACACAGTTGCATAGGAGTGGCGTACGAGTCCAGGCGCCCGGGTTGGTTACGGCTGTT,1985,
all_random_seqs
62
62
test_subset_ids/all_random_seqs.csv
63
62,62,HQ_152,TGCATTTTTTTCACATCAACATGTTTCATGCCTACGTCGTCTTTACATTTAAATTCTATTTGGTGCTGTGTGTTGAAGTGCGCGCTGGCTGTCTCCGGGTTACGGCTGTT,1986,
all_random_seqs
63
63
test_subset_ids/all_random_seqs.csv
64
63,63,HQ_154,TGCATTTTTTTCACATCAACATTGTCTGATGATTCGAGTATACCAAGTTCGTGAAAGGTGAGGCCTGCTGGCGCGCGAAGCATGATGCTGGATCGAGGGTTACGGCTGTT,1987,
all_random_seqs
64
64
test_subset_ids/all_random_seqs.csv
65
64,64,HQ_155,TGCATTTTTTTCACATCAACATTTGGGTGCGCATTGTATGACGCAAGGCGTGAGCCTAATATCGCTTGAGCAGGAACTTATTGTTGGCATAAGAACGGGTTACGGCTGTT,1989,
all_random_seqs
65
65
test_subset_ids/all_random_seqs.csv
66
65,65,HQ_156,TGCATTTTTTTCACATCAACCAATTTGGTTGTAATCGTTGGCTTTCCATATGGTGTTCACCATTGTACGACAGAAGCATCCTGGAGGGTCGAAGATGGGTTACGGCTGTT,1994,
all_random_seqs
66
66
test_subset_ids/all_random_seqs.csv
67
66,66,HQ_157,TGCATTTTTTTCACATCAACCACACTATAGGCGCCATGACAGGGGTATGATCGAGGTGAGTATACGGGCAAGCCGGTATGGCAGGTCGTTAGGACTTGGTTACGGCTGTT,2029,
all_random_seqs
67
67
test_subset_ids/all_random_seqs.csv
68
67,67,HQ_162,TGCATTTTTTTCACATCAACCGAGACATAGGGATGTTGACTTACGGAACCGTTGGATCAAAAAACAGCGGGGTATCTATTATGTGTTAGGGGTTATGGGTTACGGCTGTT,2140,
all_random_seqs
68
68
test_subset_ids/all_random_seqs.csv
69
68,68,HQ_165,TGCATTTTTTTCACATCAACCGGGGGCCGTCGTGAGGGGCCGTTTGGGCTCTGGTTTATTGACATTCCGGCGCACTTGACGAGCGGATACACTGTCTGGTTACGGCTGTT,2146,
all_random_seqs
69
69
test_subset_ids/all_random_seqs.csv
70
69,69,HQ_167,TGCATTTTTTTCACATCAACCGTTCCGACTTTGGCAGCCGTTTGTGTTGATGTGCGGCCTCTAGTGTGTTCTGATGAAGCACTTTTGGCCATGGGTTGGTTACGGCTGTT,2147,
all_random_seqs
70
70
test_subset_ids/all_random_seqs.csv
71
70,70,HQ_169,TGCATTTTTTTCACATCAACCTTAAATAACTAGGGTCCCCTATTCTTGGGTCATTAATATGCTTTCTAAACGTGACTTGAAGGAGCTTGATTCGCTTGGTTACGGCTGTT,2185,
all_random_seqs
71
71
test_subset_ids/all_random_seqs.csv
72
71,71,HQ_170,TGCATTTTTTTCACATCAACCTTCCCGTCCCCGGTGACGAGTTAGACGAATTAGATGGATATTTCGACCTCATGTCGCGTTTACGTTGCTCGGTGTTGGTTACGGCTGTT,2186,
all_random_seqs
72
72
test_subset_ids/all_random_seqs.csv
73
72,72,HQ_171,TGCATTTTTTTCACATCAACCTTGGACGTTAGGACAGGTTGGACGCCAACAAGTTCATTGTTGAATTAAACACTCGTGTCGGCGCTCGCCGTTGGCAGGTTACGGCTGTT,2187,
all_random_seqs
73
73
test_subset_ids/all_random_seqs.csv
74
73,73,HQ_174,TGCATTTTTTTCACATCAACGAGTCAATTGTGTTGTTCCCGTCGTAGTTACGCAAGTTTCCGTTCGAGTGAAGCCGTCAAGTATACAAAGATTGGGGGGTTACGGCTGTT,2196,
all_random_seqs
74
74
test_subset_ids/all_random_seqs.csv
75
74,74,HQ_175,TGCATTTTTTTCACATCAACGATCGACAGGAAGTATCACAGGGAGTTGGGTGATCGCACGCAGGGTAGCCATTCGCGTGCGTTTGCTTAAGGCGGACGGTTACGGCTGTT,2198,
all_random_seqs
75
75
test_subset_ids/all_random_seqs.csv
76
75,75,HQ_177,TGCATTTTTTTCACATCAACGCCAAGATGCGTTCAAGAAAAGAACAGCGCCATAGGCGTGGCGGGCGCCCGGCATCACATTGTTTGTATCTGGAGGGGGTTACGGCTGTT,2208,
all_random_seqs
76
76
test_subset_ids/all_random_seqs.csv
77
76,76,HQ_179,TGCATTTTTTTCACATCAACGCCGTAACGATAGTCCACGCCAGGGCCCTATGATATGAATAACCTCTCCAATACTTCCTCGTTATTTGGTAAACCGAGGTTACGGCTGTT,2215,
all_random_seqs
77
77
test_subset_ids/all_random_seqs.csv
78
77,77,HQ_181,TGCATTTTTTTCACATCAACGCGTTTGTTGTGCACAAGGGGGGCTGAGGCTAGTCGATCGCTAGTGATGTGATTTTGGGGCAGTTCCGGTTGCGGGCGGTTACGGCTGTT,2220,
all_random_seqs
78
78
test_subset_ids/all_random_seqs.csv
79
78,78,HQ_182,TGCATTTTTTTCACATCAACGGAGCTCAGGGGGGCCCTTACATATTTGCTAATAGTGCCAGCCTGGGCGGCCGAGTGTCACCTCGTGCTGATCTACAGGTTACGGCTGTT,2222,
all_random_seqs
79
79
test_subset_ids/all_random_seqs.csv
80
79,79,HQ_185,TGCATTTTTTTCACATCAACGGTGGAGTTGAAACGCTGAGGCGCCTGCGAGGCTGGCCGGGTTTCTGCTCTATTTGAGGCCCGTCGTTGCTGCTTAGGGTTACGGCTGTT,2241,
all_random_seqs
80
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YAML Metadata Warning:The task_categories "text-regression" is not in the official list: text-classification, token-classification, table-question-answering, question-answering, zero-shot-classification, translation, summarization, feature-extraction, text-generation, fill-mask, sentence-similarity, text-to-speech, text-to-audio, automatic-speech-recognition, audio-to-audio, audio-classification, audio-text-to-text, voice-activity-detection, depth-estimation, image-classification, object-detection, image-segmentation, text-to-image, image-to-text, image-to-image, image-to-video, unconditional-image-generation, video-classification, reinforcement-learning, robotics, tabular-classification, tabular-regression, tabular-to-text, table-to-text, multiple-choice, text-ranking, text-retrieval, time-series-forecasting, text-to-video, image-text-to-text, image-text-to-image, image-text-to-video, visual-question-answering, document-question-answering, zero-shot-image-classification, graph-ml, mask-generation, zero-shot-object-detection, text-to-3d, image-to-3d, image-feature-extraction, video-text-to-text, keypoint-detection, visual-document-retrieval, any-to-any, video-to-video, other

Random Promoter DREAM Challenge 2022

This dataset repackages the processed Random Promoter DREAM Challenge 2022 files from Zenodo record 10633252 for use with datasets.

The task is sequence-to-expression regression on synthetic yeast promoter sequences. The canonical supervised config contains random promoter training examples, validation examples, and labeled designed test promoters.

Configs

  • supervised: train, validation, and test splits with promoter sequences and measured activity.
  • challenge_test_sequences: unlabeled test sequences for submission-style prediction workflows.
  • test_subset_membership: normalized IDs from test_subset_ids.tar.gz.
  • public_leaderboard_ids: normalized IDs from public_leaderboard_ids.tar.gz.

Schema

supervised:

  • sequence: DNA sequence.
  • activity: measured promoter activity.
  • sequence_length: sequence length in base pairs.
  • source_file: source filename.
  • row_id: zero-based row index within the source split.

ID metadata configs:

  • subset: subset name inferred from the archive member.
  • item_id: raw ID token from the source line.
  • row_id: integer row ID when item_id is numeric; otherwise -1.
  • source_member: archive member path.
  • line_number: line number within the member.
  • raw_line: unmodified stripped source line.

Usage 

from datasets import load_dataset

ds = load_dataset("HuggingFaceBio/random-promoter-dream-2022", "supervised")
train = ds["train"]
validation = ds["validation"]
test = ds["test"]

subsets = load_dataset("HuggingFaceBio/random-promoter-dream-2022", "test_subset_membership", split="train")

Source

Source: Random Promoter DREAM Challenge 2022, Zenodo DOI 10.5281/zenodo.10633252.

The source record is licensed CC BY 4.0. Cite the original DREAM Challenge data and paper when using this dataset.

Reproduction

This dataset repo includes create_dataset.py, the script used to download, convert, and upload the configs.
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