Experiment one -v2
Collection
3 items • Updated
index int64 | seq_len int64 | id int64 | name string | host string | species string | organism_name string | location_in_host string | family string | genus string | molecule_type string | decribtion_full string | chunked_seqs string | relative_position int64 | number_of_chunks int64 | percentage_position float64 | sequence_quality float64 | __index_level_0__ int64 | input_ids sequence | attention_mask sequence |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | 7,462 | 0 | AB769152.1 | Homo sapiens | Coxsackievirus A24 | Enterovirus C | eye | Picornaviridae | Enterovirus | ssRNA(+) | AB769152.1 |Coxsackievirus A24 genomic RNA, complete genome, strain: CA24v/Okinawa/5/2011|set:AB769152|Coxsackievirus A24||2012-12-05T00:00:00Z|Department of Biological Sciences; 2085 Ozato, Nanjo, Okinawa 901-1202|Japan|Nidaira,M., Kuba,Y., Saitoh,M., Taira,K., Maeshiro,N., Mahoe,Y., Kyan,H., Takara,T., Okano,S., Kuda... | gaaattaaaacagctctggggttgttcccaccccagaggcccacgtggcggctagtacactggtattacggtacccttgtacgcctgttttacacccctttcccccgtaacttagaagcttttaaattcaagttcaacagtgagtggtacaacccagtactactatgaacaagcacttctgttaccccggtgagattgcataagctgtccccacggctaaaagcgattgatccgttatccgctcttgtacttcgagaagcccagtaaaaccttgggatcctcgatgcgttgcgctcaacactcaaccccagagtgtagct... | 0 | 5 | 0.2 | 0 | 0 | [
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0 | 7,462 | 2 | AB769152.1 | Homo sapiens | Coxsackievirus A24 | Enterovirus C | eye | Picornaviridae | Enterovirus | ssRNA(+) | AB769152.1 |Coxsackievirus A24 genomic RNA, complete genome, strain: CA24v/Okinawa/5/2011|set:AB769152|Coxsackievirus A24||2012-12-05T00:00:00Z|Department of Biological Sciences; 2085 Ozato, Nanjo, Okinawa 901-1202|Japan|Nidaira,M., Kuba,Y., Saitoh,M., Taira,K., Maeshiro,N., Mahoe,Y., Kyan,H., Takara,T., Okano,S., Kuda... | ggtgttggtgtcccagaccacctcgtgcagttccgtaccgaggtgagggcgtcgatttcaaacaagactcaattaccccactgacagccgttgaagacattaatacttttggagggtttggacaccaaaatatggcggtgtatgttgcaggttacaagatttgcaattatcacctagccacccctgaagaccacagcaatgccgtggatgtgctatggaacagagacctcataattgtcagcagcagagcgcagggaaccgacacaattgccagatgtagctgtagagcaggagtgtattactgtaagtcaatgaagaaa... | 2 | 5 | 0.6 | 0 | 2 | [
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1 | 6,368 | 5 | OM453149.1 | Homo sapiens | Severe fever with thrombocytopenia syndrome virus | Bandavirus dabieense | blood | Phenuiviridae | Bandavirus | ssRNA(+/-) | OM453149.1 |Severe fever with thrombocytopenia syndrome virus isolate 14-China_Henan-76 segment L, complete sequence||Severe fever with thrombocytopenia syndrome virus||2022-06-21T00:00:00Z|Beijing Institute of Microbiology and Epidemiology, State Key Laboratory of Pathogen and Biosecurity|China|Dai,Z.N., Peng,X.F., Li... | aagctgaagttctggcctatctatgtcattatcaagccgaccaaatcatcatcccatatcttctacagcttagggatccgcaaggctgacgtgacaaggaggctaactggcagagtcttctctgacaccattgatgctggggaatgggaactaacagagttcaaaagcctgaagacatgcaagctcacgaatcttgtcaacttgccatgcaccatgctgaactcaatagctttctggagagagaagctgggcgtggctccatggctggttcgaaagccctgttcagagctcagggagcaggtgggcctgaccttcctgat... | 1 | 4 | 0.5 | 0 | 5 | [
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1 | 6,368 | 6 | OM453149.1 | Homo sapiens | Severe fever with thrombocytopenia syndrome virus | Bandavirus dabieense | blood | Phenuiviridae | Bandavirus | ssRNA(+/-) | OM453149.1 |Severe fever with thrombocytopenia syndrome virus isolate 14-China_Henan-76 segment L, complete sequence||Severe fever with thrombocytopenia syndrome virus||2022-06-21T00:00:00Z|Beijing Institute of Microbiology and Epidemiology, State Key Laboratory of Pathogen and Biosecurity|China|Dai,Z.N., Peng,X.F., Li... | ttcagagcttctacaagtcttatttcgtctcgaaactcaaggagggctacatgggggaaagcatcagtggggtggtggatgtcatagaaggctctgacgactcagcgatcatgattagcatacgccctaagtcagacatggatgaagttcgatccaggttctttgttgctaacttgctccactctgtcaagttcttgaatccattgtttgggatttattcatcagagaaatcaacagtgaacacagtgtattgtgtcgagtataactctgaattccatttccacaggcacttggttagacccacactgaggtggatagca... | 2 | 4 | 0.8 | 0 | 6 | [
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1 | 6,368 | 7 | OM453149.1 | Homo sapiens | Severe fever with thrombocytopenia syndrome virus | Bandavirus dabieense | blood | Phenuiviridae | Bandavirus | ssRNA(+/-) | OM453149.1 |Severe fever with thrombocytopenia syndrome virus isolate 14-China_Henan-76 segment L, complete sequence||Severe fever with thrombocytopenia syndrome virus||2022-06-21T00:00:00Z|Beijing Institute of Microbiology and Epidemiology, State Key Laboratory of Pathogen and Biosecurity|China|Dai,Z.N., Peng,X.F., Li... | ggagtacaagctggaaatgatcatagaggccttctctactcttgtgataccacagccatcagaggtcatcaggaaatcaaggaccatgactttatgcctcttatcgaattacttgtctagtagaggtgggtccattctagaccaaattgagagggcacagtcaggcactctaggaggcttcagcaagccccagaagacatttattaggccaggaggtggtgttggctacaagggaaaaggtgtgtggactggagtgatggaggacacccatgttcaaattctgatagatggagatggtactagtaactggcttgaggaga... | 3 | 4 | 1 | 0 | 7 | [
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2 | 1,779 | 8 | NC_007242.1 | Vicia faba | Vicia cryptic virus | Vicia cryptic virus | Partitiviridae | Alphapartitivirus | dsRNA | NC_007242.1 |Vicia cryptic virus RNA2, complete genome|GCF_000865745.1|Vicia cryptic virus||2005-08-02T00:00:00Z|National Center for Biotechnology Information, NIH|USA|Blawid,R., Maiss,E.||Vicia cryptic virus|Alphapartitivirus|complete|Partitiviridae|dsRNA|1779|RefSeq||RNA 2||Germany|Germany||Vicia faba||||PRJNA485481 | gatcaaaagagtaacagtccttgtaccaacttttcacaatcaaaatagaacgcgaatcttgactgctctacctcaactttttacttactttaacgttgtttatcaaccgtccctctcaatggaagctcatactcccgctgctgatgtcaatggacccaatatcccctccggtgctgtctctcagccagaaatcgctccacacaatcaagctgcccccaacgtctctggtgctgctcaggctataatagcccccacccctgctcgtaagcgcacgcctcacggacccattcctgctgccacctcatctggcaacacctctg... | 0 | 2 | 0.5 | 0 | 8 | [
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3 | 1,111 | 9 | FJ605506.1 | Musa acuminata | Banana bunchy top virus | Babuvirus musae | Nanoviridae | Babuvirus | ssDNA(+) | FJ605506.1 |Banana bunchy top virus isolate Bihar segment DNA1, complete sequence|set:3423337ceac3cb9db42fc0673e5046d2eee4f847|Banana bunchy top virus||2009-02-08T00:00:00Z|Jamia Millia Islamia, Biosciences|India|Islam,M.N., Naqvi,A.R., Jan,A.T., Haq,Q.M.R.|Bihar|Babuvirus musae|Babuvirus|complete|Nanoviridae|ssDNA(+)|... | agcgctggggcttattattacccccagcgctcgggacgggacatttgcatctataaatagacctcccccctctccattacaagatcatcatcgacgacagaatggcgcgatatgtggtatgctggatgttcaccatcaacaatcccacaacactaccagtgatgagggatgagatcaaatatatggtatatcaagtggagaggggacaggagggtacacgtcatgtgcaaggttatgtcgagatgaagagacgaagctctctgaagcagatgagaggcttcttcccaggcgcacaccttgagaaacgaaagggaagccaa... | 0 | 1 | 1 | 0 | 9 | [
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4 | 4,760 | 10 | OL472234.1 | Solanum lycopersicum | Tomato bushy stunt virus | Tombusvirus lycopersici | Tombusviridae | Tombusvirus | ssRNA(+) | OL472234.1 |MAG: Tomato bushy stunt virus isolate STR20ST1, complete genome||Tomato bushy stunt virus|SRR16552268|2022-07-23T00:00:00Z|National Institute of Biology, Department of Biotechnology and Systems Biology|Slovenia|Rivarez,M.P.S., Pecman,A., Bacnik,K., Maksimovic Carvalho Ferreira,O., Vucurovic,A., Seljak,G., M... | gatttctcgaccttgttcgtttatctggtgacttgcgctaactgttgctttgcgtagggaatttctctccataactattatctttagatttggggtttgaaggctgggtctacctttcggggggataaattgtaacttccagcaaataagcgacatggagaccatcaagagaatgatttggcctaagaaggagatctttgtaggagattttgcgatcggagttaataggacggcaccggtggacatcttccagttggtgtgtcgtgtggttctaagatacatgaggacagggaaaatagagtgtgattcagacagcatga... | 0 | 3 | 0.3 | 0 | 10 | [
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4 | 4,760 | 11 | OL472234.1 | Solanum lycopersicum | Tomato bushy stunt virus | Tombusvirus lycopersici | Tombusviridae | Tombusvirus | ssRNA(+) | OL472234.1 |MAG: Tomato bushy stunt virus isolate STR20ST1, complete genome||Tomato bushy stunt virus|SRR16552268|2022-07-23T00:00:00Z|National Institute of Biology, Department of Biotechnology and Systems Biology|Slovenia|Rivarez,M.P.S., Pecman,A., Bacnik,K., Maksimovic Carvalho Ferreira,O., Vucurovic,A., Seljak,G., M... | acgacatgcatcaagggatatacagccgatgaggtaggtgcgatctttcgggcaaagtgggacaggtttgataaacctgtggccattggcctcgacgcatctaggtttgatcaacactgttccgttgaagctttgcaatatgagcatagtttctacagggccatgtaccctggcaacaagcttttgggcaagttgttggaatggcagctccataataaaggtaaaggttatgttccggatgggactataacttatcgtaaggagggctgtcgtatgagtggggatataaacacctcgttgggcaattatctactgatgtg... | 1 | 3 | 0.7 | 0 | 11 | [
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5 | 2,452 | 13 | KP233188.1 | Homo sapiens | Human smacovirus 1 | Human smacovirus 1 | feces | Smacoviridae | Huchismacovirus | ssDNA | KP233188.1 |Human smacovirus 1 isolate Virginia/12/2011/Albemarle/G16, complete genome|set:KP233188|Human smacovirus 1||2015-01-28T00:00:00Z|Blood Systems Research Institute, Molecular Biology|USA|Ng,T.F.F., Sachsenroeder,J., Vega,E., Kondov,N.O., Jang,C., Deng,X., Gregoricus,N., Vinje,J., Delwart,E.|Virginia/12/2011/A... | aagtcttaagtacccctacccgtatttagagtctatgtcttattacagacgctcttattaccctcgtaggcgatcctacggtaggcgcagatactacagacgcaggagatactaaacatggcctatagaactggattgtatgctttacctattgcaggacgtttcatttacgaatatgaccgtatgaaggactacggtaagatggcaaaagactacagacgtaatactggccgtacctctaagtatgcaacccagggatatgaagctcagatgtaccggcaagctggtcaattatatgattctgctctttcgtttggtac... | 0 | 2 | 0.5 | 0 | 13 | [
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6 | 1,896 | 14 | KU342687.1 | Phoca vitulina | Phocine morbillivirus | Morbillivirus phocae | Paramyxoviridae | Morbillivirus | ssRNA(-) | KU342687.1 |Phocine morbillivirus strain PDV/NL/2014 fusion protein (F) gene, complete cds|set:KU342687|Phocine morbillivirus||2017-01-04T00:00:00Z|Faculty of Veterinary Medicine, Utrecht University, Department of Pathobiology|Netherlands|van Beurden,S.J., Kik,M., Rijks,J., van Asten,F., de Vrieze,G., Brasseur,S., Sieb... | atgactcgagtcaagaaactcccagtgccaacaaacccgcccatgcatcatagtctcgattcaccatttctaaaccctgaacatgctacagggaagatcagcattaccgatgacacttcatcccagctgacaaatttcctttatcataaataccataacaccaccatcaatcacctacctagaaccatttccgggacagaccctccctcagccaagctaaacaagttcggatcacctattttgagtacataccggatccggtcagcattatggtggatagcagtggtcacccttgttcactgtgtgatgggtcagataca... | 0 | 2 | 0.5 | 0 | 14 | [
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7 | 1,767 | 15 | KY569375.1 | Sus scrofa | Porcine circovirus 2 | Circovirus porcine2 | Circoviridae | Circovirus | ssDNA(+/-) | KY569375.1 |Porcine circovirus 2 strain BDBY2016, complete genome|set:KY569375|Porcine circovirus 2||2018-01-28T00:00:00Z|Agricultural University of Hebei, College of Veterinary Medicine|China|Hao,D., Song,Q., Yao,Z., Li,J.||Circovirus porcine2|Circovirus|complete|Circoviridae|ssDNA(+/-)|1767|GenBank||||China|China||Su... | accagcgcacttcggcagcggcagcacctcggcagcacctcagcagcaacatgcccagcaagaagagtggaagaagcggaccccaaccacataaaaggtgggtgttcacgctgaataatccttccgaagacgagcgcaagaaaatacgggagctcccaatctccctatttgattattttattgttggcgaggaaggtaatgaggagggccgaacaccccacctacaggggttcgctaattttgtgaagaagcaaacttttaataaagtgaagtggtattttggtgcccgctgccacatcgagaaagcgaaaggaacagat... | 0 | 2 | 0.5 | 0 | 15 | [
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8 | 1,125 | 16 | JX272476.1 | Bluetongue virus 15 | Bluetongue virus | Sedoreoviridae | Orbivirus | dsRNA | JX272476.1 |Bluetongue virus 15 isolate 23/8/65 segment 8, complete sequence|set:c9b0734d2e28f7659e67957a50ad5b7cfe2bb1eb|Bluetongue virus 15||2013-05-31T00:00:00Z|Onderstepoort Veterinary Institute, Virology|South Africa|Koekemoer,O., DeCastro,M., Michuki,G.|23/8/65|Bluetongue virus|Orbivirus|complete|Sedoreoviridae|d... | gttaaaaaatccttgagtcatggagcaaaagcaacgtagatttactaaaaacatttttgtattggacgcaaatgctaaaacattatgcggagcgatcgcaaagttgagttcgcaaccatattgtcagattaaaattggaagggtaatagcttttaaacctgtcaagaatccggaacctaaaggatacgtgctgaatgttccaggacctggtgcgtacagaattcaggatgggcaggatatcattagcctgatgctggcaccacatggagttgaagcgacaacggaaagatgggaagagtggaagtttgagggcgttagtg... | 0 | 1 | 1 | 0 | 16 | [
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9 | 3,944 | 17 | KJ661729.1 | Bluetongue virus 1 | Bluetongue virus | Sedoreoviridae | Orbivirus | dsRNA | KJ661729.1 |Bluetongue virus 1 isolate SIC2013 segment 1, complete sequence|set:1c8922bd1e2840331918f40111cd7f651f2bbaa2|Bluetongue virus 1||2014-06-22T00:00:00Z|Istituto Zooprofilattico Sperimentale Abruzzo e Molise, Virology Unit|Italy|Lorusso,A., Marcacci,M., Di Gennaro,A., Ancora,M., Mangone,I., Camma',C., Savini,G... | gttaaaatgcaatggtcgcaatcaccgtgcaaggtgcacagctcatcaagcgagtggtcgaacgcttttatccagggatagcatttaatataaatgaaggagcatgctatatatataagttttcggatcatatacgacgtataaggatgaaacatggaacaaaatatcgacggcaggcggaagagattatacgcaatataagtttgaggaaagagcgattgtatgggataccagtattagatgaggttgagtggaagtatgtgtttgatggtcaaacgttccaaagttacgcttttgaggtgtacgtgaactcaattttg... | 0 | 3 | 0.3 | 0 | 17 | [
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9 | 3,944 | 18 | KJ661729.1 | Bluetongue virus 1 | Bluetongue virus | Sedoreoviridae | Orbivirus | dsRNA | KJ661729.1 |Bluetongue virus 1 isolate SIC2013 segment 1, complete sequence|set:1c8922bd1e2840331918f40111cd7f651f2bbaa2|Bluetongue virus 1||2014-06-22T00:00:00Z|Istituto Zooprofilattico Sperimentale Abruzzo e Molise, Virology Unit|Italy|Lorusso,A., Marcacci,M., Di Gennaro,A., Ancora,M., Mangone,I., Camma',C., Savini,G... | ggttggcgggataaccagtccggattataagaagatcggaggaaaagtaattgttggagatttggaggctacggggtcgcgcgtgatggacgctgctgattgctttcgtaactctgcggatcgcgatatattcacaattgcgattgattatagcgagtacgatacacacctaacgcgacataattttcgaaccggtatgctccaaggaatcagagaggctatggccccctatagggatttgcgatatgaaggttatacgttggagcaaatcatagattttggatatggagaggggagggtagcgaatacgctatggaatg... | 1 | 3 | 0.7 | 0 | 18 | [
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10 | 3,302 | 19 | MW384187.1 | Homo sapiens | Human rotavirus A | Rotavirus A | feces | Sedoreoviridae | Rotavirus | dsRNA | MW384187.1 |Human rotavirus A strain RVA/Human-wt/CHN/Fuzhou18-96/2018/G9P[8] segment 1, complete sequence||Human rotavirus A||2022-05-02T00:00:00Z|Viral Disease Prevention and Control Laboratory, Fujian Provincial Center for Disease Control and Prevention|China|Huang,Z., Wu,B., Lin,Q., Lin,W., Weng,Y.||Rotavirus A|Rot... | ggctattaaagctgtacaatggggaagtacaatctaatcttgtcagaatatttatcatttgtttacaattcacaatctgcagttcaaataccaatttattattcttccaatccagaattagaaaaaagatgtattgaatttcatgctaaatgtgttgacaattctaaaaaaggtatatcattaaaacctgtatttgaagagtataaagatgtaatagataatgcaacgttactatctatattatcatattcttatgataaatacaacgctgtggaacggaaactagtcaattatgctaaaggtaaacctttagaggctga... | 0 | 3 | 0.3 | 0 | 19 | [
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10 | 3,302 | 20 | MW384187.1 | Homo sapiens | Human rotavirus A | Rotavirus A | feces | Sedoreoviridae | Rotavirus | dsRNA | MW384187.1 |Human rotavirus A strain RVA/Human-wt/CHN/Fuzhou18-96/2018/G9P[8] segment 1, complete sequence||Human rotavirus A||2022-05-02T00:00:00Z|Viral Disease Prevention and Control Laboratory, Fujian Provincial Center for Disease Control and Prevention|China|Huang,Z., Wu,B., Lin,Q., Lin,W., Weng,Y.||Rotavirus A|Rot... | tgttatctaatatgactaatgatccaaaagtaatacaaacgctaaatttatataaacaaacacaagttaatctcatggattcatatgttcaaatacctgatggtaatgtaatcaaaaagattcagtatggtgctgttgcttcaggagaaaaacaaactaaggcagccaattctatagctaatttggcactcattaaaacagtattgtcaaggattgcaaataaatattcttttataaccaaaataatcagagttgatggtgatgataattatgcagtactacaatttaacaccgatgttactaaacaaatggtccaagat... | 1 | 3 | 0.7 | 0 | 20 | [
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12 | 14,531 | 22 | NC_043213.1 | Equine torovirus | Equine torovirus | Tobaniviridae | Torovirus | ssRNA(+) | NC_043213.1 |Equine torovirus strain Berne 5' UTR and replicase polyprotein 1a (ORF1a) gene, complete cds|set:NC_043213|Equine torovirus||2019-06-28T00:00:00Z|National Center for Biotechnology Information, NIH|USA|Smits,S.L., Snijder,E.J., de Groot,R.J.||Equine torovirus|Torovirus|complete|Tobaniviridae|ssRNA(+)|14531|... | acgtatctttagaagtttatgaagccttgaaataaaaagctataaaccttattacggttagtccaccacacggctaaattttcagtgcgcagtcactagtcagggaggttcagccctgtcttttacttctgtgtaggaatctgtacagatatattgtctgcatactagtagttacaagagagtgcatttagtacttacaagcgggtcaaaccgccctccggaaaggtgcactttccctcccgaacgtgtgtagaccgtgaccattgtgtctagctatctgtaacaaactatacggttgtattttactcaactttaaggct... | 0 | 9 | 0.1 | 0 | 22 | [
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