Experiment one -v2
Collection
3 items • Updated
index int64 0 210k | seq_len int64 1k 1.57M | id int64 3 1.83M | name stringlengths 8 11 | host stringlengths 0 64 | species stringlengths 3 95 | organism_name stringlengths 0 61 | location_in_host stringclasses 155
values | family stringclasses 243
values | genus stringlengths 6 26 | molecule_type stringclasses 17
values | decribtion_full stringlengths 228 3.54k | chunked_seqs stringlengths 1k 2.05k | relative_position int64 0 939 | number_of_chunks int64 1 955 | percentage_position float64 0 1 | sequence_quality float64 0 0 | __index_level_0__ int64 3 1.83M | input_ids sequencelengths 2.05k 2.05k | attention_mask sequencelengths 2.05k 2.05k |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | 7,462 | 3 | AB769152.1 | Homo sapiens | Coxsackievirus A24 | Enterovirus C | eye | Picornaviridae | Enterovirus | ssRNA(+) | AB769152.1 |Coxsackievirus A24 genomic RNA, complete genome, strain: CA24v/Okinawa/5/2011|set:AB769152|Coxsackievirus A24||2012-12-05T00:00:00Z|Department of Biological Sciences; 2085 Ozato, Nanjo, Okinawa 901-1202|Japan|Nidaira,M., Kuba,Y., Saitoh,M., Taira,K., Maeshiro,N., Mahoe,Y., Kyan,H., Takara,T., Okano,S., Kuda... | gcaattgtgcaaggattgtccacaaccagctaattttaagaagtgttgcccattggtttgcggaaaggctctacaattaatggacaagaatacccggcaaagattcaccctggacgaaataactactttaataattaatgagaaaaacagaagggccaacattgggaattgcatggaagcattgtttcaaggtcctatacagtacagagatttgaagattgacattaaagagacgcctgccccagattacattaatgatcttcttcaatcagtggacaaccaagagctcagggactactgtgagaaaaagggatggattg... | 3 | 5 | 0.8 | 0 | 3 | [
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1 | 6,368 | 4 | OM453149.1 | Homo sapiens | Severe fever with thrombocytopenia syndrome virus | Bandavirus dabieense | blood | Phenuiviridae | Bandavirus | ssRNA(+/-) | OM453149.1 |Severe fever with thrombocytopenia syndrome virus isolate 14-China_Henan-76 segment L, complete sequence||Severe fever with thrombocytopenia syndrome virus||2022-06-21T00:00:00Z|Beijing Institute of Microbiology and Epidemiology, State Key Laboratory of Pathogen and Biosecurity|China|Dai,Z.N., Peng,X.F., Li... | acacagagacgcccagatgaacttggaagtgctttgtggtaggataaacgtggagaatgggctgtctcttggagaaccaggcctgtacgaccaaatctacgacaggccagggctcccagacctagatgtgacagtcgatgccacaggtgtgactgtggacataggggctgtgccagactcagcatcacaactgggttcatcaatcaatgctgggttgatcacaatccagctctctgaagcatataagatcaatcatgacttcacgttttctggtctgtcaaagacaacagaccgacgcctctcagaggtattccccatta... | 0 | 4 | 0.2 | 0 | 4 | [
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4 | 4,760 | 12 | OL472234.1 | Solanum lycopersicum | Tomato bushy stunt virus | Tombusvirus lycopersici | Tombusviridae | Tombusvirus | ssRNA(+) | OL472234.1 |MAG: Tomato bushy stunt virus isolate STR20ST1, complete genome||Tomato bushy stunt virus|SRR16552268|2022-07-23T00:00:00Z|National Institute of Biology, Department of Biotechnology and Systems Biology|Slovenia|Rivarez,M.P.S., Pecman,A., Bacnik,K., Maksimovic Carvalho Ferreira,O., Vucurovic,A., Seljak,G., M... | taagagattttgtgatgacagttccacatcagatcacaaacttatcgacctaggtcaattgggcattgctacatatggtggcgctgggactaacgctgtgggggatattttcatctcatacagtgttacgttatatttccctcaacctacgaatacactccttagtaccagaaggctcgaccttgctggcgctcttgtcacatcatccggtcctgggtacctttttgtgtctaggactgccactgtcttgacaatgacatttcgtgctacaggcacgtttgtcatatccgggacgtataggtgcctcacggcaacaacgt... | 2 | 3 | 1 | 0 | 12 | [
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12 | 14,531 | 30 | NC_043213.1 | Equine torovirus | Equine torovirus | Tobaniviridae | Torovirus | ssRNA(+) | NC_043213.1 |Equine torovirus strain Berne 5' UTR and replicase polyprotein 1a (ORF1a) gene, complete cds|set:NC_043213|Equine torovirus||2019-06-28T00:00:00Z|National Center for Biotechnology Information, NIH|USA|Smits,S.L., Snijder,E.J., de Groot,R.J.||Equine torovirus|Torovirus|complete|Tobaniviridae|ssRNA(+)|14531|... | tttggtaccacatttaacactggtcatggaagtaatcttgcaggtttagcatactctacaacacaacctttgtcagcctacccctttatttttaaccttgagggtatttttaaacaacaagccaatataggttataagacagtagaatgtaatatgtcatcacataatgggagtgttttgtataagggtaaggttgttgcagtaccatctgatgataatccagattttgttgtgtgtggtaaagggtataagcttgattgtggtataaatgtacttatgataccatcgatagtacgttatattacattaaatttaacaga... | 8 | 9 | 1 | 0 | 30 | [
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13 | 27,410 | 32 | KF530114.1 | Homo sapiens | Human coronavirus NL63 | Human coronavirus NL63 | Coronaviridae | Alphacoronavirus | ssRNA(+) | KF530114.1 |Human coronavirus NL63 strain NL63/human/USA/891-4/1989, complete genome|set:KF530114|Human coronavirus NL63||2013-10-07T00:00:00Z|J. Craig Venter Institute|USA|Town,C.D., Halpin,R.A., Ransier,A., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katz... | agatgtatttaaaattggtgatgttaaatttaaacgacttggtgattatgttcttactgaaaacgctcttgttcgtttgactactgaagttgttcgtggtgttcgtgatgctcgcataaagaaagccatgtttactaaagtagttgtaggtcctacaactgaagttaagttttctgttattgaacttgccactgttaatttgcgtcttgttgattgtgcacctgtagtttgccctaaaggtaagattgttgttattgctggacaagcttttttctatagtggtggtttttatcgttttatggttgatcctacaactgtat... | 1 | 17 | 0.1 | 0 | 32 | [
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13 | 27,410 | 44 | KF530114.1 | Homo sapiens | Human coronavirus NL63 | Human coronavirus NL63 | Coronaviridae | Alphacoronavirus | ssRNA(+) | KF530114.1 |Human coronavirus NL63 strain NL63/human/USA/891-4/1989, complete genome|set:KF530114|Human coronavirus NL63||2013-10-07T00:00:00Z|J. Craig Venter Institute|USA|Town,C.D., Halpin,R.A., Ransier,A., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katz... | cttttggcccttcctctcaaccttattactgttttataaacagtactatcaacactactcatgttagcacttttgtgggtattttaccacccactgtgcgtgaaattgttgttgctagaactggtcagttttatattaatggttttaagtatttcgatttgggtttcatagaagctgtcaattttaatgtcacgactgctagtgccacagatttttggacggttgcatttgctacttttgttgatgttttggttaatgttagtgcaactaacattcaaaacttactttattgtgattctccatttgaaaagttgcagtgt... | 13 | 17 | 0.8 | 0 | 44 | [
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13 | 27,410 | 45 | KF530114.1 | Homo sapiens | Human coronavirus NL63 | Human coronavirus NL63 | Coronaviridae | Alphacoronavirus | ssRNA(+) | KF530114.1 |Human coronavirus NL63 strain NL63/human/USA/891-4/1989, complete genome|set:KF530114|Human coronavirus NL63||2013-10-07T00:00:00Z|J. Craig Venter Institute|USA|Town,C.D., Halpin,R.A., Ransier,A., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katz... | tgttgactataagtcttgtactaaaggtctttctattgctgaccttgcttgtgctcagtactacaatggtataatggttttgccaggtgttgctgatgctgaacgtatggccatgtacacaggttctcttataggtggcatggtgctcggaggtcttacatcagcagccgccatacctttttctttggcactgcaagcacgacttaactatgttgctttacaaactgatgtgcttcaagaaaatcagaaaattttggctgcatcatttaataaggctattaataatattgttgcttcttttagtagcgttaatgatgcta... | 14 | 17 | 0.9 | 0 | 45 | [
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13 | 27,410 | 47 | KF530114.1 | Homo sapiens | Human coronavirus NL63 | Human coronavirus NL63 | Coronaviridae | Alphacoronavirus | ssRNA(+) | KF530114.1 |Human coronavirus NL63 strain NL63/human/USA/891-4/1989, complete genome|set:KF530114|Human coronavirus NL63||2013-10-07T00:00:00Z|J. Craig Venter Institute|USA|Town,C.D., Halpin,R.A., Ransier,A., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katz... | ctaaggaaggtgctaaaactgttaataccagtcttggtaatcgcaaacgtaatcagaaacctttggaaccaaagttctctattgctttgcctccagagctctctgttgttgagtttgaggatcgctctaataactcatctcgtgctagcagtcgttcttcaactcgtaacaactcacgagactcttctcgtagcacttcaagacaacagtctcgcactcgttctgattctaaccagtcttcttcagatcttgttgctgctgttactttggctttaaagaacttaggttttgataaccagtcgaagtcacctagttcttct... | 16 | 17 | 1 | 0 | 47 | [
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14 | 8,034 | 51 | AB863202.1 | Brassica oleracea var. botrytis | Cauliflower mosaic virus | Caulimovirus tessellobrassicae | plant leaf | Caulimoviridae | Caulimovirus | dsDNA-RT | AB863202.1 |Cauliflower mosaic virus DNA, complete genome, isolate: GRC92D|set:AB863202|Cauliflower mosaic virus||2014-03-07T00:00:00Z|Faculty of Agriculture, Laboratory of Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502|Japan|Yasaka,R., Nguyen,H.D., Ho,S.Y., Duchene,S., Korkmaz,S., Katis,N., Takahashi,H., G... | agaagataaacttccttggtctagaaatagatgaaggaacacacaagcctcaaggacacatcttggaacacatcaacaaattcccagatacccttgaagacaagaagcaacttcagagattcttaggcatactaacatatgcctcagattatatcccgaagctagctcaaatcagaaagcctctgcaagccaagcttaaagaaaacgttccatggaaatggacaaaagaggacaccctctacatgcaaaaggtgaagaaaaatctgcaaggatttcctccactacatcatcccttaccagaagagaagctgatcatcgag... | 3 | 5 | 0.8 | 0 | 51 | [
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17 | 6,042 | 60 | KU955467.1 | Solanum tuberosum | Potato mop-top virus | Potato mop-top virus | Virgaviridae | Pomovirus | ssRNA(+) | KU955467.1 |Potato mop-top virus isolate C29_P70 segment RNA-rep, complete sequence|set:1e4e3a386a9cdd9d52a7d68605d53c89ac087ab1|Potato mop-top virus||2017-05-24T00:00:00Z|Swedish University of Agricultural Sciences, Plant Biology|Sweden|Kalyandurg,P., Gil,J.F., Lukhovitskaya,N.I., Flores,B., Muller,G., Chuquillanqui,C... | aattcatgatgtccctttgtatttggagattaatgaccggattaaattagggtctgctctgaaaaatgttaatggattttcactgagtttctctgaattggatgagaaagtgagtctatatgaggagtatgagcgagaaagacaacgaatatcggatgagattgtcagtgagaaaattggtttgattggcgaaggatatgtgaaagttggggagtccagcttaaaaccaaagcagaaagttgcgtcccgagacgggatggcgcagtgggtaagtggtgagtgccacttgtataacaccatgaagtgtgaggataaaccag... | 1 | 4 | 0.5 | 0 | 60 | [
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17 | 6,042 | 61 | KU955467.1 | Solanum tuberosum | Potato mop-top virus | Potato mop-top virus | Virgaviridae | Pomovirus | ssRNA(+) | KU955467.1 |Potato mop-top virus isolate C29_P70 segment RNA-rep, complete sequence|set:1e4e3a386a9cdd9d52a7d68605d53c89ac087ab1|Potato mop-top virus||2017-05-24T00:00:00Z|Swedish University of Agricultural Sciences, Plant Biology|Sweden|Kalyandurg,P., Gil,J.F., Lukhovitskaya,N.I., Flores,B., Muller,G., Chuquillanqui,C... | aaacgtgtgaggactgtagattcttatttgctcaatgatacccaatctcgtgccaatgtgcttcattttgatgaagcgttgatggcgcatgctggtatggtgtatttttgtgcggatgatttgtctgcaagaagtgtgatatgtcaaggtgactctcagcagatcccgtttattaatagagtggagtctattacgcttcgatactctaaattggaaattgataatgttgtggaaaaaagactgacttatagatcgcctttggatgtggcatcgtacctgaccaagaagaatttttatggtacatccgtggtgactagtgc... | 2 | 4 | 0.8 | 0 | 61 | [
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19 | 1,812 | 63 | NC_055123.1 | Circovirus pichong | Circovirus pichong | Circoviridae | Circovirus | ssDNA(+/-) | NC_055123.1 |Tick associated circovirus 2 isolate hlj-Ic.518, complete genome|GCF_004050755.1|Circovirus pichong||2021-06-01T00:00:00Z|National Center for Biotechnology Information, NIH|USA|Liu,H.H., Liu,Q.|hlj-Ic.518|Circovirus pichong|Circovirus|complete|Circoviridae|ssDNA(+/-)|1812|RefSeq||||China: Heilongjiang|Chin... | accggccacttggagccacggagccacactccgccatgcccgccaagagacgagttgagctgagagaagcagccgcggcacgctggtgcttcactctgaacaaccccaccgatgaagaggtggctgccgtgaaagcctggaacccgagtgagtaccactatgcaatagtggggcgtgagcgaggggaacaaggcaccccccatttgcagggcttcatccatatgaagaaaaaaggccgactaagtgctttaaaaaagcttcttagtcgggcccactgggagaaggcccgtgggtctgatgaagacaatgaggagtattgc... | 0 | 2 | 0.5 | 0 | 63 | [
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21 | 38,846 | 70 | OL964739.1 | Escherichia | Escherichia phage T7 | Teseptimavirus T7 | Autographiviridae | Teseptimavirus | dsDNA | OL964739.1 |Mutant Escherichia phage T7 clone T7_5t1, complete genome||Escherichia phage T7||2022-01-31T00:00:00Z|SIAT, iSynBio|China|Yuans,S., Ma,Y.||Teseptimavirus T7|Teseptimavirus|complete|Autographiviridae|dsDNA|38846|GenBank|||||||Escherichia|||| | tcgaggttccaatctacgctgagaccctagacgaagctctggagttagccgaatggcaatacgttccggctggctttgaggttactcgtgtgcgtccttgtgtagcaccgaagtaatacgactcactattagggaagactccctctgagaaaccaaacgaaacctaaaggagattaacattatggctaagaagattttcacctctgcgctgggtaccgctgaaccttacgcttacatcgccaagccggactacggcaacgaagagcgtggctttgggaaccctcgtggtgtctataaagttgacctgactattcccaaca... | 5 | 24 | 0.2 | 0 | 70 | [
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21 | 38,846 | 73 | OL964739.1 | Escherichia | Escherichia phage T7 | Teseptimavirus T7 | Autographiviridae | Teseptimavirus | dsDNA | OL964739.1 |Mutant Escherichia phage T7 clone T7_5t1, complete genome||Escherichia phage T7||2022-01-31T00:00:00Z|SIAT, iSynBio|China|Yuans,S., Ma,Y.||Teseptimavirus T7|Teseptimavirus|complete|Autographiviridae|dsDNA|38846|GenBank|||||||Escherichia|||| | attaccatgcgtgaccctaaagttatccaagcagaaatcgctaaactggaagctgaactggaggacgttaagtaccatgaagctaagactcgctccgctgttcacatcttgaagaacttaggctggacttggacaagacagactggctggaagaaaccagaagttaccaagctgagtcataaggtgttcgataaggacactatgacccacatcaaggctggtgattgggttaaggttgacatgggagttgttggtggatacggctacgtccgctcagttagtggcaaatatgcacaagtgtcatacatcacaggtgttac... | 8 | 24 | 0.4 | 0 | 73 | [
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21 | 38,846 | 79 | OL964739.1 | Escherichia | Escherichia phage T7 | Teseptimavirus T7 | Autographiviridae | Teseptimavirus | dsDNA | OL964739.1 |Mutant Escherichia phage T7 clone T7_5t1, complete genome||Escherichia phage T7||2022-01-31T00:00:00Z|SIAT, iSynBio|China|Yuans,S., Ma,Y.||Teseptimavirus T7|Teseptimavirus|complete|Autographiviridae|dsDNA|38846|GenBank|||||||Escherichia|||| | caccgctgagcaataactagcataaccccttggggcctctaaacgggtcttgaggggttttttgctgaaaggaggaactatatgcgctcatacgatatgaacgttgagactgccgctgagttatcagctgtgaacgacattctggcgtctatcggtgaacctccggtatcaacgctggaaggtgacgctaacgcagatgcagcgaacgctcggcgtattctcaacaagattaaccgacagattcaatctcgtggatggacgttcaacattgaggaaggcataacgctactacctgatgtttactccaacctgattgtata... | 14 | 24 | 0.6 | 0 | 79 | [
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21 | 38,846 | 83 | OL964739.1 | Escherichia | Escherichia phage T7 | Teseptimavirus T7 | Autographiviridae | Teseptimavirus | dsDNA | OL964739.1 |Mutant Escherichia phage T7 clone T7_5t1, complete genome||Escherichia phage T7||2022-01-31T00:00:00Z|SIAT, iSynBio|China|Yuans,S., Ma,Y.||Teseptimavirus T7|Teseptimavirus|complete|Autographiviridae|dsDNA|38846|GenBank|||||||Escherichia|||| | ggaccattaggcatgatgcaatttaccaaggcaaccgctaaggccctcggtctgcgagttaccgatggtccagacgacgaccgactgaaccctgagttagctattaatgctgccgctaagcaacttgcaggtctggtagggaagtttgatggcgatgaactcaaagctgcccttgcgtacaaccaaggcgagggacgcttgggtaatccacaacttgaggcgtactctaagggagacttcgcatcaatctctgaggagggacgtaactacatgcgtaaccttctggatgttgctaagtcacctatggctggacagttgga... | 18 | 24 | 0.8 | 0 | 83 | [
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21 | 38,846 | 85 | OL964739.1 | Escherichia | Escherichia phage T7 | Teseptimavirus T7 | Autographiviridae | Teseptimavirus | dsDNA | OL964739.1 |Mutant Escherichia phage T7 clone T7_5t1, complete genome||Escherichia phage T7||2022-01-31T00:00:00Z|SIAT, iSynBio|China|Yuans,S., Ma,Y.||Teseptimavirus T7|Teseptimavirus|complete|Autographiviridae|dsDNA|38846|GenBank|||||||Escherichia|||| | tggtggtttctatgctatggctgcacacgtcagagcatacgctctgcctaaggagaaacgtaaggagtacttggagcgtgcactggacccaaccatgattgcccacgctgcgttatctcgtagttctcaattgggtgttcctttggctatggttgacctagttggtggtgttttagggttcgagtcctccaagatggctcgctctacgattctacctaaggacaccgtgaaggaacgtgacccaaacaaaccgtacacctctagagaggtaatgggcgctatgggttcaaaccttctggaacagatgccttcggctggct... | 20 | 24 | 0.9 | 0 | 85 | [
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