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6,000 | mfitzp/padua | padua/analysis.py | modifiedaminoacids | def modifiedaminoacids(df):
"""
Calculate the number of modified amino acids in supplied ``DataFrame``.
Returns the total of all modifications and the total for each amino acid individually, as an ``int`` and a
``dict`` of ``int``, keyed by amino acid, respectively.
:param df: Pandas ``DataFrame``... | python | def modifiedaminoacids(df):
"""
Calculate the number of modified amino acids in supplied ``DataFrame``.
Returns the total of all modifications and the total for each amino acid individually, as an ``int`` and a
``dict`` of ``int``, keyed by amino acid, respectively.
:param df: Pandas ``DataFrame``... | [
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6,001 | mfitzp/padua | padua/process.py | build_index_from_design | def build_index_from_design(df, design, remove_prefix=None, types=None, axis=1, auto_convert_numeric=True, unmatched_columns='index'):
"""
Build a MultiIndex from a design table.
Supply with a table with column headings for the new multiindex
and a index containing the labels to search for in the data.... | python | def build_index_from_design(df, design, remove_prefix=None, types=None, axis=1, auto_convert_numeric=True, unmatched_columns='index'):
"""
Build a MultiIndex from a design table.
Supply with a table with column headings for the new multiindex
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6,002 | mfitzp/padua | padua/process.py | build_index_from_labels | def build_index_from_labels(df, indices, remove_prefix=None, types=None, axis=1):
"""
Build a MultiIndex from a list of labels and matching regex
Supply with a dictionary of Hierarchy levels and matching regex to
extract this level from the sample label
:param df:
:param indices: Tuples of ind... | python | def build_index_from_labels(df, indices, remove_prefix=None, types=None, axis=1):
"""
Build a MultiIndex from a list of labels and matching regex
Supply with a dictionary of Hierarchy levels and matching regex to
extract this level from the sample label
:param df:
:param indices: Tuples of ind... | [
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6,003 | mfitzp/padua | padua/process.py | combine_expression_columns | def combine_expression_columns(df, columns_to_combine, remove_combined=True):
"""
Combine expression columns, calculating the mean for 2 columns
:param df: Pandas dataframe
:param columns_to_combine: A list of tuples containing the column names to combine
:return:
"""
df = df.copy()
... | python | def combine_expression_columns(df, columns_to_combine, remove_combined=True):
"""
Combine expression columns, calculating the mean for 2 columns
:param df: Pandas dataframe
:param columns_to_combine: A list of tuples containing the column names to combine
:return:
"""
df = df.copy()
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6,004 | mfitzp/padua | padua/process.py | expand_side_table | def expand_side_table(df):
"""
Perform equivalent of 'expand side table' in Perseus by folding
Multiplicity columns down onto duplicate rows
The id is remapped to UID___Multiplicity, which
is different to Perseus behaviour, but prevents accidental of
non-matching rows from occurring later in an... | python | def expand_side_table(df):
"""
Perform equivalent of 'expand side table' in Perseus by folding
Multiplicity columns down onto duplicate rows
The id is remapped to UID___Multiplicity, which
is different to Perseus behaviour, but prevents accidental of
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6,005 | mfitzp/padua | padua/process.py | apply_experimental_design | def apply_experimental_design(df, f, prefix='Intensity '):
"""
Load the experimental design template from MaxQuant and use it to apply the label names to the data columns.
:param df:
:param f: File path for the experimental design template
:param prefix:
:return: dt
"""
df = df.copy()
... | python | def apply_experimental_design(df, f, prefix='Intensity '):
"""
Load the experimental design template from MaxQuant and use it to apply the label names to the data columns.
:param df:
:param f: File path for the experimental design template
:param prefix:
:return: dt
"""
df = df.copy()
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6,006 | mfitzp/padua | padua/process.py | transform_expression_columns | def transform_expression_columns(df, fn=np.log2, prefix='Intensity '):
"""
Apply transformation to expression columns.
Default is log2 transform to expression columns beginning with Intensity
:param df:
:param prefix: The column prefix for expression columns
:return:
"""
df = df.copy(... | python | def transform_expression_columns(df, fn=np.log2, prefix='Intensity '):
"""
Apply transformation to expression columns.
Default is log2 transform to expression columns beginning with Intensity
:param df:
:param prefix: The column prefix for expression columns
:return:
"""
df = df.copy(... | [
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6,007 | mfitzp/padua | padua/process.py | fold_columns_to_rows | def fold_columns_to_rows(df, levels_from=2):
"""
Take a levels from the columns and fold down into the row index.
This destroys the existing index; existing rows will appear as
columns under the new column index
:param df:
:param levels_from: The level (inclusive) from which column index will b... | python | def fold_columns_to_rows(df, levels_from=2):
"""
Take a levels from the columns and fold down into the row index.
This destroys the existing index; existing rows will appear as
columns under the new column index
:param df:
:param levels_from: The level (inclusive) from which column index will b... | [
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6,008 | ECRL/ecabc | ecabc/abc.py | ABC.args | def args(self, args):
'''Set additional arguments to be passed to the fitness function
Args:
args (dict): additional arguments
'''
self._args = args
self._logger.log('debug', 'Args set to {}'.format(args)) | python | def args(self, args):
'''Set additional arguments to be passed to the fitness function
Args:
args (dict): additional arguments
'''
self._args = args
self._logger.log('debug', 'Args set to {}'.format(args)) | [
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6,009 | ECRL/ecabc | ecabc/abc.py | ABC.minimize | def minimize(self, minimize):
'''Configures the ABC to minimize fitness function return value or
derived score
Args:
minimize (bool): if True, minimizes fitness function return value;
if False, minimizes derived score
'''
self._minimize = minimize
... | python | def minimize(self, minimize):
'''Configures the ABC to minimize fitness function return value or
derived score
Args:
minimize (bool): if True, minimizes fitness function return value;
if False, minimizes derived score
'''
self._minimize = minimize
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6,010 | ECRL/ecabc | ecabc/abc.py | ABC.num_employers | def num_employers(self, num_employers):
'''Sets the number of employer bees; at least two are required
Args:
num_employers (int): number of employer bees
'''
if num_employers < 2:
self._logger.log(
'warn',
'Two employers are neede... | python | def num_employers(self, num_employers):
'''Sets the number of employer bees; at least two are required
Args:
num_employers (int): number of employer bees
'''
if num_employers < 2:
self._logger.log(
'warn',
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6,011 | ECRL/ecabc | ecabc/abc.py | ABC.processes | def processes(self, processes):
'''Set the number of concurrent processes the ABC will utilize for
fitness function evaluation; if <= 1, single process is used
Args:
processes (int): number of concurrent processes
'''
if self._processes > 1:
self._pool.c... | python | def processes(self, processes):
'''Set the number of concurrent processes the ABC will utilize for
fitness function evaluation; if <= 1, single process is used
Args:
processes (int): number of concurrent processes
'''
if self._processes > 1:
self._pool.c... | [
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6,012 | ECRL/ecabc | ecabc/abc.py | ABC.infer_process_count | def infer_process_count(self):
'''Infers the number of CPU cores in the current system, sets the
number of concurrent processes accordingly
'''
try:
self.processes = multiprocessing.cpu_count()
except NotImplementedError:
self._logger.log(
... | python | def infer_process_count(self):
'''Infers the number of CPU cores in the current system, sets the
number of concurrent processes accordingly
'''
try:
self.processes = multiprocessing.cpu_count()
except NotImplementedError:
self._logger.log(
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6,013 | ECRL/ecabc | ecabc/abc.py | ABC.create_employers | def create_employers(self):
'''Generate employer bees. This should be called directly after the
ABC is initialized.
'''
self.__verify_ready(True)
employers = []
for i in range(self._num_employers):
employer = EmployerBee(self.__gen_random_values())
... | python | def create_employers(self):
'''Generate employer bees. This should be called directly after the
ABC is initialized.
'''
self.__verify_ready(True)
employers = []
for i in range(self._num_employers):
employer = EmployerBee(self.__gen_random_values())
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6,014 | ECRL/ecabc | ecabc/abc.py | ABC.run_iteration | def run_iteration(self):
'''Runs a single iteration of the ABC; employer phase -> probability
calculation -> onlooker phase -> check positions
'''
self._employer_phase()
self._calc_probability()
self._onlooker_phase()
self._check_positions() | python | def run_iteration(self):
'''Runs a single iteration of the ABC; employer phase -> probability
calculation -> onlooker phase -> check positions
'''
self._employer_phase()
self._calc_probability()
self._onlooker_phase()
self._check_positions() | [
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6,015 | ECRL/ecabc | ecabc/abc.py | ABC._calc_probability | def _calc_probability(self):
'''Determines the probability that each bee will be chosen during the
onlooker phase; also determines if a new best-performing bee is found
'''
self._logger.log('debug', 'Calculating bee probabilities')
self.__verify_ready()
self._total_score... | python | def _calc_probability(self):
'''Determines the probability that each bee will be chosen during the
onlooker phase; also determines if a new best-performing bee is found
'''
self._logger.log('debug', 'Calculating bee probabilities')
self.__verify_ready()
self._total_score... | [
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6,016 | ECRL/ecabc | ecabc/abc.py | ABC._merge_bee | def _merge_bee(self, bee):
'''Shifts a random value for a supplied bee with in accordance with
another random bee's value
Args:
bee (EmployerBee): supplied bee to merge
Returns:
tuple: (score of new position, values of new position, fitness
funct... | python | def _merge_bee(self, bee):
'''Shifts a random value for a supplied bee with in accordance with
another random bee's value
Args:
bee (EmployerBee): supplied bee to merge
Returns:
tuple: (score of new position, values of new position, fitness
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6,017 | ECRL/ecabc | ecabc/abc.py | ABC._move_bee | def _move_bee(self, bee, new_values):
'''Moves a bee to a new position if new fitness score is better than
the bee's current fitness score
Args:
bee (EmployerBee): bee to move
new_values (tuple): (new score, new values, new fitness function
return value)
... | python | def _move_bee(self, bee, new_values):
'''Moves a bee to a new position if new fitness score is better than
the bee's current fitness score
Args:
bee (EmployerBee): bee to move
new_values (tuple): (new score, new values, new fitness function
return value)
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6,018 | ECRL/ecabc | ecabc/abc.py | ABC.__update | def __update(self, score, values, error):
'''Update the best score and values if the given score is better than
the current best score
Args:
score (float): new score to evaluate
values (list): new value ranges to evaluate
error (float): new fitness function r... | python | def __update(self, score, values, error):
'''Update the best score and values if the given score is better than
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Args:
score (float): new score to evaluate
values (list): new value ranges to evaluate
error (float): new fitness function r... | [
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6,019 | ECRL/ecabc | ecabc/abc.py | ABC.__gen_random_values | def __gen_random_values(self):
'''Generate random values based on supplied value ranges
Returns:
list: random values, one per tunable variable
'''
values = []
if self._value_ranges is None:
self._logger.log(
'crit',
'Must ... | python | def __gen_random_values(self):
'''Generate random values based on supplied value ranges
Returns:
list: random values, one per tunable variable
'''
values = []
if self._value_ranges is None:
self._logger.log(
'crit',
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6,020 | ECRL/ecabc | ecabc/abc.py | ABC.__verify_ready | def __verify_ready(self, creating=False):
'''Some cleanup, ensures that everything is set up properly to avoid
random errors during execution
Args:
creating (bool): True if currently creating employer bees, False
for checking all other operations
'''
... | python | def __verify_ready(self, creating=False):
'''Some cleanup, ensures that everything is set up properly to avoid
random errors during execution
Args:
creating (bool): True if currently creating employer bees, False
for checking all other operations
'''
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6,021 | ECRL/ecabc | ecabc/abc.py | ABC.import_settings | def import_settings(self, filename):
'''Import settings from a JSON file
Args:
filename (string): name of the file to import from
'''
if not os.path.isfile(filename):
self._logger.log(
'error',
'File: {} not found, continuing with... | python | def import_settings(self, filename):
'''Import settings from a JSON file
Args:
filename (string): name of the file to import from
'''
if not os.path.isfile(filename):
self._logger.log(
'error',
'File: {} not found, continuing with... | [
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6,022 | ECRL/ecabc | ecabc/abc.py | ABC.save_settings | def save_settings(self, filename):
'''Save settings to a JSON file
Arge:
filename (string): name of the file to save to
'''
data = dict()
data['valueRanges'] = self._value_ranges
data['best_values'] = [str(value) for value in self._best_values]
data[... | python | def save_settings(self, filename):
'''Save settings to a JSON file
Arge:
filename (string): name of the file to save to
'''
data = dict()
data['valueRanges'] = self._value_ranges
data['best_values'] = [str(value) for value in self._best_values]
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6,023 | ECRL/ecabc | ecabc/bees.py | EmployerBee.get_score | def get_score(self, error=None):
'''Calculate bee's fitness score given a value returned by the fitness
function
Args:
error (float): value returned by the fitness function
Returns:
float: derived fitness score
'''
if error is not None:
... | python | def get_score(self, error=None):
'''Calculate bee's fitness score given a value returned by the fitness
function
Args:
error (float): value returned by the fitness function
Returns:
float: derived fitness score
'''
if error is not None:
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6,024 | foremast/foremast | src/foremast/dns/create_dns.py | SpinnakerDns.create_elb_dns | def create_elb_dns(self, regionspecific=False):
"""Create dns entries in route53.
Args:
regionspecific (bool): The DNS entry should have region on it
Returns:
str: Auto-generated DNS name for the Elastic Load Balancer.
"""
if regionspecific:
... | python | def create_elb_dns(self, regionspecific=False):
"""Create dns entries in route53.
Args:
regionspecific (bool): The DNS entry should have region on it
Returns:
str: Auto-generated DNS name for the Elastic Load Balancer.
"""
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6,025 | foremast/foremast | src/foremast/dns/create_dns.py | SpinnakerDns.create_failover_dns | def create_failover_dns(self, primary_region='us-east-1'):
"""Create dns entries in route53 for multiregion failover setups.
Args:
primary_region (str): primary AWS region for failover
Returns:
Auto-generated DNS name.
"""
dns_record = self.generated.dns(... | python | def create_failover_dns(self, primary_region='us-east-1'):
"""Create dns entries in route53 for multiregion failover setups.
Args:
primary_region (str): primary AWS region for failover
Returns:
Auto-generated DNS name.
"""
dns_record = self.generated.dns(... | [
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6,026 | foremast/foremast | src/foremast/elb/format_listeners.py | format_listeners | def format_listeners(elb_settings=None, env='dev', region='us-east-1'):
"""Format ELB Listeners into standard list.
Args:
elb_settings (dict): ELB settings including ELB Listeners to add,
e.g.::
# old
{
"certificate": null,
... | python | def format_listeners(elb_settings=None, env='dev', region='us-east-1'):
"""Format ELB Listeners into standard list.
Args:
elb_settings (dict): ELB settings including ELB Listeners to add,
e.g.::
# old
{
"certificate": null,
... | [
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6,027 | foremast/foremast | src/foremast/elb/format_listeners.py | format_cert_name | def format_cert_name(env='', account='', region='', certificate=None):
"""Format the SSL certificate name into ARN for ELB.
Args:
env (str): Account environment name
account (str): Account number for ARN
region (str): AWS Region.
certificate (str): Name of SSL certificate
R... | python | def format_cert_name(env='', account='', region='', certificate=None):
"""Format the SSL certificate name into ARN for ELB.
Args:
env (str): Account environment name
account (str): Account number for ARN
region (str): AWS Region.
certificate (str): Name of SSL certificate
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6,028 | foremast/foremast | src/foremast/elb/format_listeners.py | generate_custom_cert_name | def generate_custom_cert_name(env='', region='', account='', certificate=None):
"""Generate a custom TLS Cert name based on a template.
Args:
env (str): Account environment name
region (str): AWS Region.
account (str): Account number for ARN.
certificate (str): Name of SSL certi... | python | def generate_custom_cert_name(env='', region='', account='', certificate=None):
"""Generate a custom TLS Cert name based on a template.
Args:
env (str): Account environment name
region (str): AWS Region.
account (str): Account number for ARN.
certificate (str): Name of SSL certi... | [
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6,029 | foremast/foremast | src/foremast/slacknotify/__main__.py | main | def main():
"""Send Slack notification to a configured channel."""
logging.basicConfig(format=LOGGING_FORMAT)
log = logging.getLogger(__name__)
parser = argparse.ArgumentParser()
add_debug(parser)
add_app(parser)
add_env(parser)
add_properties(parser)
args = parser.parse_args()
... | python | def main():
"""Send Slack notification to a configured channel."""
logging.basicConfig(format=LOGGING_FORMAT)
log = logging.getLogger(__name__)
parser = argparse.ArgumentParser()
add_debug(parser)
add_app(parser)
add_env(parser)
add_properties(parser)
args = parser.parse_args()
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6,030 | foremast/foremast | src/foremast/destroyer.py | main | def main(): # noqa
"""Attempt to fully destroy AWS Resources for a Spinnaker Application."""
logging.basicConfig(format=LOGGING_FORMAT)
parser = argparse.ArgumentParser(description=main.__doc__)
add_debug(parser)
add_app(parser)
args = parser.parse_args()
if args.debug == logging.DEBUG:
... | python | def main(): # noqa
"""Attempt to fully destroy AWS Resources for a Spinnaker Application."""
logging.basicConfig(format=LOGGING_FORMAT)
parser = argparse.ArgumentParser(description=main.__doc__)
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6,031 | foremast/foremast | src/foremast/pipeline/construct_pipeline_block.py | check_provider_healthcheck | def check_provider_healthcheck(settings, default_provider='Discovery'):
"""Set Provider Health Check when specified.
Returns:
collections.namedtuple: **ProviderHealthCheck** with attributes:
* providers (list): Providers set to use native Health Check.
* has_healthcheck (bool):... | python | def check_provider_healthcheck(settings, default_provider='Discovery'):
"""Set Provider Health Check when specified.
Returns:
collections.namedtuple: **ProviderHealthCheck** with attributes:
* providers (list): Providers set to use native Health Check.
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6,032 | foremast/foremast | src/foremast/pipeline/construct_pipeline_block.py | get_template_name | def get_template_name(env, pipeline_type):
"""Generates the correct template name based on pipeline type
Args:
env (str): environment to generate templates for
pipeline_type (str): Type of pipeline like ec2 or lambda
Returns:
str: Name of template
"""
pipeline_base = 'pipel... | python | def get_template_name(env, pipeline_type):
"""Generates the correct template name based on pipeline type
Args:
env (str): environment to generate templates for
pipeline_type (str): Type of pipeline like ec2 or lambda
Returns:
str: Name of template
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6,033 | foremast/foremast | src/foremast/pipeline/construct_pipeline_block.py | ec2_pipeline_setup | def ec2_pipeline_setup(
generated=None,
project='',
settings=None,
env='',
pipeline_type='',
region='',
region_subnets=None,
):
"""Handles ec2 pipeline data setup
Args:
generated (gogoutils.Generator): Generated naming formats.
project (st... | python | def ec2_pipeline_setup(
generated=None,
project='',
settings=None,
env='',
pipeline_type='',
region='',
region_subnets=None,
):
"""Handles ec2 pipeline data setup
Args:
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6,034 | foremast/foremast | src/foremast/pipeline/create_pipeline_manual.py | SpinnakerPipelineManual.create_pipeline | def create_pipeline(self):
"""Use JSON files to create Pipelines."""
pipelines = self.settings['pipeline']['pipeline_files']
self.log.info('Uploading manual Pipelines: %s', pipelines)
lookup = FileLookup(git_short=self.generated.gitlab()['main'], runway_dir=self.runway_dir)
for... | python | def create_pipeline(self):
"""Use JSON files to create Pipelines."""
pipelines = self.settings['pipeline']['pipeline_files']
self.log.info('Uploading manual Pipelines: %s', pipelines)
lookup = FileLookup(git_short=self.generated.gitlab()['main'], runway_dir=self.runway_dir)
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6,035 | foremast/foremast | src/foremast/pipeline/__main__.py | main | def main():
"""Creates a pipeline in Spinnaker"""
logging.basicConfig(format=LOGGING_FORMAT)
log = logging.getLogger(__name__)
parser = argparse.ArgumentParser()
add_debug(parser)
add_app(parser)
add_properties(parser)
parser.add_argument('-b', '--base', help='Base AMI name to use, e.g.... | python | def main():
"""Creates a pipeline in Spinnaker"""
logging.basicConfig(format=LOGGING_FORMAT)
log = logging.getLogger(__name__)
parser = argparse.ArgumentParser()
add_debug(parser)
add_app(parser)
add_properties(parser)
parser.add_argument('-b', '--base', help='Base AMI name to use, e.g.... | [
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6,036 | foremast/foremast | src/foremast/configs/outputs.py | convert_ini | def convert_ini(config_dict):
"""Convert _config_dict_ into a list of INI formatted strings.
Args:
config_dict (dict): Configuration dictionary to be flattened.
Returns:
(list) Lines to be written to a file in the format of KEY1_KEY2=value.
"""
config_lines = []
for env, confi... | python | def convert_ini(config_dict):
"""Convert _config_dict_ into a list of INI formatted strings.
Args:
config_dict (dict): Configuration dictionary to be flattened.
Returns:
(list) Lines to be written to a file in the format of KEY1_KEY2=value.
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6,037 | foremast/foremast | src/foremast/configs/outputs.py | write_variables | def write_variables(app_configs=None, out_file='', git_short=''):
"""Append _application.json_ configs to _out_file_, .exports, and .json.
Variables are written in INI style, e.g. UPPER_CASE=value. The .exports file
contains 'export' prepended to each line for easy sourcing. The .json file
is a minifie... | python | def write_variables(app_configs=None, out_file='', git_short=''):
"""Append _application.json_ configs to _out_file_, .exports, and .json.
Variables are written in INI style, e.g. UPPER_CASE=value. The .exports file
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6,038 | foremast/foremast | src/foremast/utils/get_sns_subscriptions.py | get_sns_subscriptions | def get_sns_subscriptions(app_name, env, region):
"""List SNS lambda subscriptions.
Returns:
list: List of Lambda subscribed SNS ARNs.
"""
session = boto3.Session(profile_name=env, region_name=region)
sns_client = session.client('sns')
lambda_alias_arn = get_lambda_alias_arn(app=app_n... | python | def get_sns_subscriptions(app_name, env, region):
"""List SNS lambda subscriptions.
Returns:
list: List of Lambda subscribed SNS ARNs.
"""
session = boto3.Session(profile_name=env, region_name=region)
sns_client = session.client('sns')
lambda_alias_arn = get_lambda_alias_arn(app=app_n... | [
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6,039 | foremast/foremast | src/foremast/awslambda/cloudwatch_log_event/destroy_cloudwatch_log_event/destroy_cloudwatch_log_event.py | destroy_cloudwatch_log_event | def destroy_cloudwatch_log_event(app='', env='dev', region=''):
"""Destroy Cloudwatch log event.
Args:
app (str): Spinnaker Application name.
env (str): Deployment environment.
region (str): AWS region.
Returns:
bool: True upon successful completion.
"""
session = b... | python | def destroy_cloudwatch_log_event(app='', env='dev', region=''):
"""Destroy Cloudwatch log event.
Args:
app (str): Spinnaker Application name.
env (str): Deployment environment.
region (str): AWS region.
Returns:
bool: True upon successful completion.
"""
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6,040 | foremast/foremast | src/foremast/app/create_app.py | SpinnakerApp.get_accounts | def get_accounts(self, provider='aws'):
"""Get Accounts added to Spinnaker.
Args:
provider (str): What provider to find accounts for.
Returns:
list: list of dicts of Spinnaker credentials matching _provider_.
Raises:
AssertionError: Failure getting ... | python | def get_accounts(self, provider='aws'):
"""Get Accounts added to Spinnaker.
Args:
provider (str): What provider to find accounts for.
Returns:
list: list of dicts of Spinnaker credentials matching _provider_.
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6,041 | foremast/foremast | src/foremast/app/create_app.py | SpinnakerApp.create_app | def create_app(self):
"""Send a POST to spinnaker to create a new application with class variables.
Raises:
AssertionError: Application creation failed.
"""
self.appinfo['accounts'] = self.get_accounts()
self.log.debug('Pipeline Config\n%s', pformat(self.pipeline_con... | python | def create_app(self):
"""Send a POST to spinnaker to create a new application with class variables.
Raises:
AssertionError: Application creation failed.
"""
self.appinfo['accounts'] = self.get_accounts()
self.log.debug('Pipeline Config\n%s', pformat(self.pipeline_con... | [
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6,042 | foremast/foremast | src/foremast/app/create_app.py | SpinnakerApp.retrieve_template | def retrieve_template(self):
"""Sets the instance links with pipeline_configs and then renders template files
Returns:
jsondata: A json objects containing templates
"""
links = self.retrieve_instance_links()
self.log.debug('Links is \n%s', pformat(links))
sel... | python | def retrieve_template(self):
"""Sets the instance links with pipeline_configs and then renders template files
Returns:
jsondata: A json objects containing templates
"""
links = self.retrieve_instance_links()
self.log.debug('Links is \n%s', pformat(links))
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6,043 | foremast/foremast | src/foremast/app/create_app.py | SpinnakerApp.retrieve_instance_links | def retrieve_instance_links(self):
"""Appends on existing instance links
Returns:
instance_links: A dictionary containing all the instance links in LINKS and not in pipeline_config
"""
instance_links = {}
self.log.debug("LINKS IS %s", LINKS)
for key, value in... | python | def retrieve_instance_links(self):
"""Appends on existing instance links
Returns:
instance_links: A dictionary containing all the instance links in LINKS and not in pipeline_config
"""
instance_links = {}
self.log.debug("LINKS IS %s", LINKS)
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6,044 | foremast/foremast | src/foremast/utils/get_cloudwatch_event_rule.py | get_cloudwatch_event_rule | def get_cloudwatch_event_rule(app_name, account, region):
"""Get CloudWatch Event rule names."""
session = boto3.Session(profile_name=account, region_name=region)
cloudwatch_client = session.client('events')
lambda_alias_arn = get_lambda_alias_arn(app=app_name, account=account, region=region)
rule_... | python | def get_cloudwatch_event_rule(app_name, account, region):
"""Get CloudWatch Event rule names."""
session = boto3.Session(profile_name=account, region_name=region)
cloudwatch_client = session.client('events')
lambda_alias_arn = get_lambda_alias_arn(app=app_name, account=account, region=region)
rule_... | [
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6,045 | foremast/foremast | src/foremast/s3/s3deploy.py | S3Deployment.setup_pathing | def setup_pathing(self):
"""Format pathing for S3 deployments."""
self.s3_version_uri = self._path_formatter(self.version)
self.s3_latest_uri = self._path_formatter("LATEST")
self.s3_canary_uri = self._path_formatter("CANARY")
self.s3_alpha_uri = self._path_formatter("ALPHA")
... | python | def setup_pathing(self):
"""Format pathing for S3 deployments."""
self.s3_version_uri = self._path_formatter(self.version)
self.s3_latest_uri = self._path_formatter("LATEST")
self.s3_canary_uri = self._path_formatter("CANARY")
self.s3_alpha_uri = self._path_formatter("ALPHA")
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6,046 | foremast/foremast | src/foremast/s3/s3deploy.py | S3Deployment._path_formatter | def _path_formatter(self, suffix):
"""Format the s3 path properly.
Args:
suffix (str): suffix to add on to an s3 path
Returns:
str: formatted path
"""
if suffix.lower() == "mirror":
path_items = [self.bucket, self.s3path]
else:
... | python | def _path_formatter(self, suffix):
"""Format the s3 path properly.
Args:
suffix (str): suffix to add on to an s3 path
Returns:
str: formatted path
"""
if suffix.lower() == "mirror":
path_items = [self.bucket, self.s3path]
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6,047 | foremast/foremast | src/foremast/s3/s3deploy.py | S3Deployment.upload_artifacts | def upload_artifacts(self):
"""Upload artifacts to S3 and copy to correct path depending on strategy."""
deploy_strategy = self.properties["deploy_strategy"]
mirror = False
if deploy_strategy == "mirror":
mirror = True
self._upload_artifacts_to_path(mirror=mirror)
... | python | def upload_artifacts(self):
"""Upload artifacts to S3 and copy to correct path depending on strategy."""
deploy_strategy = self.properties["deploy_strategy"]
mirror = False
if deploy_strategy == "mirror":
mirror = True
self._upload_artifacts_to_path(mirror=mirror)
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6,048 | foremast/foremast | src/foremast/s3/s3deploy.py | S3Deployment.promote_artifacts | def promote_artifacts(self, promote_stage='latest'):
"""Promote artifact version to dest.
Args:
promote_stage (string): Stage that is being promoted
"""
if promote_stage.lower() == 'alpha':
self._sync_to_uri(self.s3_canary_uri)
elif promote_stage.lower() ... | python | def promote_artifacts(self, promote_stage='latest'):
"""Promote artifact version to dest.
Args:
promote_stage (string): Stage that is being promoted
"""
if promote_stage.lower() == 'alpha':
self._sync_to_uri(self.s3_canary_uri)
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6,049 | foremast/foremast | src/foremast/s3/s3deploy.py | S3Deployment._get_upload_cmd | def _get_upload_cmd(self, mirror=False):
"""Generate the S3 CLI upload command
Args:
mirror (bool): If true, uses a flat directory structure instead of nesting under a version.
Returns:
str: The full CLI command to run.
"""
if mirror:
dest_ur... | python | def _get_upload_cmd(self, mirror=False):
"""Generate the S3 CLI upload command
Args:
mirror (bool): If true, uses a flat directory structure instead of nesting under a version.
Returns:
str: The full CLI command to run.
"""
if mirror:
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6,050 | foremast/foremast | src/foremast/s3/s3deploy.py | S3Deployment._upload_artifacts_to_path | def _upload_artifacts_to_path(self, mirror=False):
"""Recursively upload directory contents to S3.
Args:
mirror (bool): If true, uses a flat directory structure instead of nesting under a version.
"""
if not os.listdir(self.artifact_path) or not self.artifact_path:
... | python | def _upload_artifacts_to_path(self, mirror=False):
"""Recursively upload directory contents to S3.
Args:
mirror (bool): If true, uses a flat directory structure instead of nesting under a version.
"""
if not os.listdir(self.artifact_path) or not self.artifact_path:
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6,051 | foremast/foremast | src/foremast/s3/s3deploy.py | S3Deployment.content_metadata_uploads | def content_metadata_uploads(self, mirror=False):
"""Finds all specified encoded directories and uploads in multiple parts,
setting metadata for objects.
Args:
mirror (bool): If true, uses a flat directory structure instead of nesting under a version.
Returns:
b... | python | def content_metadata_uploads(self, mirror=False):
"""Finds all specified encoded directories and uploads in multiple parts,
setting metadata for objects.
Args:
mirror (bool): If true, uses a flat directory structure instead of nesting under a version.
Returns:
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6,052 | foremast/foremast | src/foremast/s3/s3deploy.py | S3Deployment._sync_to_uri | def _sync_to_uri(self, uri):
"""Copy and sync versioned directory to uri in S3.
Args:
uri (str): S3 URI to sync version to.
"""
cmd_cp = 'aws s3 cp {} {} --recursive --profile {}'.format(self.s3_version_uri, uri, self.env)
# AWS CLI sync does not work as expected buc... | python | def _sync_to_uri(self, uri):
"""Copy and sync versioned directory to uri in S3.
Args:
uri (str): S3 URI to sync version to.
"""
cmd_cp = 'aws s3 cp {} {} --recursive --profile {}'.format(self.s3_version_uri, uri, self.env)
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6,053 | foremast/foremast | src/foremast/utils/vpc.py | get_vpc_id | def get_vpc_id(account, region):
"""Get VPC ID configured for ``account`` in ``region``.
Args:
account (str): AWS account name.
region (str): Region name, e.g. us-east-1.
Returns:
str: VPC ID for the requested ``account`` in ``region``.
Raises:
:obj:`foremast.exception... | python | def get_vpc_id(account, region):
"""Get VPC ID configured for ``account`` in ``region``.
Args:
account (str): AWS account name.
region (str): Region name, e.g. us-east-1.
Returns:
str: VPC ID for the requested ``account`` in ``region``.
Raises:
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6,054 | foremast/foremast | src/foremast/utils/subnets.py | get_subnets | def get_subnets(
target='ec2',
purpose='internal',
env='',
region='', ):
"""Get all availability zones for a given target.
Args:
target (str): Type of subnets to look up (ec2 or elb).
env (str): Environment to look up.
region (str): AWS Region to find Sub... | python | def get_subnets(
target='ec2',
purpose='internal',
env='',
region='', ):
"""Get all availability zones for a given target.
Args:
target (str): Type of subnets to look up (ec2 or elb).
env (str): Environment to look up.
region (str): AWS Region to find Sub... | [
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6,055 | foremast/foremast | src/foremast/awslambda/awslambdaevent.py | LambdaEvent.create_lambda_events | def create_lambda_events(self):
"""Create all defined lambda events for an lambda application."""
# Clean up lambda permissions before creating triggers
remove_all_lambda_permissions(app_name=self.app_name, env=self.env, region=self.region)
triggers = self.properties['lambda_triggers']... | python | def create_lambda_events(self):
"""Create all defined lambda events for an lambda application."""
# Clean up lambda permissions before creating triggers
remove_all_lambda_permissions(app_name=self.app_name, env=self.env, region=self.region)
triggers = self.properties['lambda_triggers']... | [
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6,056 | foremast/foremast | src/foremast/utils/pipelines.py | get_all_pipelines | def get_all_pipelines(app=''):
"""Get a list of all the Pipelines in _app_.
Args:
app (str): Name of Spinnaker Application.
Returns:
requests.models.Response: Response from Gate containing Pipelines.
"""
url = '{host}/applications/{app}/pipelineConfigs'.format(host=API_URL, app=ap... | python | def get_all_pipelines(app=''):
"""Get a list of all the Pipelines in _app_.
Args:
app (str): Name of Spinnaker Application.
Returns:
requests.models.Response: Response from Gate containing Pipelines.
"""
url = '{host}/applications/{app}/pipelineConfigs'.format(host=API_URL, app=ap... | [
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6,057 | foremast/foremast | src/foremast/utils/pipelines.py | get_pipeline_id | def get_pipeline_id(app='', name=''):
"""Get the ID for Pipeline _name_.
Args:
app (str): Name of Spinnaker Application to search.
name (str): Name of Pipeline to get ID for.
Returns:
str: ID of specified Pipeline.
None: Pipeline or Spinnaker Appliation not found.
"""
... | python | def get_pipeline_id(app='', name=''):
"""Get the ID for Pipeline _name_.
Args:
app (str): Name of Spinnaker Application to search.
name (str): Name of Pipeline to get ID for.
Returns:
str: ID of specified Pipeline.
None: Pipeline or Spinnaker Appliation not found.
"""
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6,058 | foremast/foremast | src/foremast/utils/pipelines.py | normalize_pipeline_name | def normalize_pipeline_name(name=''):
"""Translate unsafe characters to underscores."""
normalized_name = name
for bad in '\\/?%#':
normalized_name = normalized_name.replace(bad, '_')
return normalized_name | python | def normalize_pipeline_name(name=''):
"""Translate unsafe characters to underscores."""
normalized_name = name
for bad in '\\/?%#':
normalized_name = normalized_name.replace(bad, '_')
return normalized_name | [
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6,059 | foremast/foremast | src/foremast/utils/apps.py | get_all_apps | def get_all_apps():
"""Get a list of all applications in Spinnaker.
Returns:
requests.models.Response: Response from Gate containing list of all apps.
"""
LOG.info('Retreiving list of all Spinnaker applications')
url = '{}/applications'.format(API_URL)
response = requests.get(url, veri... | python | def get_all_apps():
"""Get a list of all applications in Spinnaker.
Returns:
requests.models.Response: Response from Gate containing list of all apps.
"""
LOG.info('Retreiving list of all Spinnaker applications')
url = '{}/applications'.format(API_URL)
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6,060 | foremast/foremast | src/foremast/utils/apps.py | get_details | def get_details(app='groupproject', env='dev', region='us-east-1'):
"""Extract details for Application.
Args:
app (str): Application Name
env (str): Environment/account to get details from
Returns:
collections.namedtuple with _group_, _policy_, _profile_, _role_,
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"""Extract details for Application.
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app (str): Application Name
env (str): Environment/account to get details from
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6,061 | foremast/foremast | src/foremast/pipeline/create_pipeline_s3.py | SpinnakerPipelineS3.create_pipeline | def create_pipeline(self):
"""Main wrapper for pipeline creation.
1. Runs clean_pipelines to clean up existing ones
2. determines which environments the pipeline needs
3. Renders all of the pipeline blocks as defined in configs
4. Runs post_pipeline to create pipeline
"""... | python | def create_pipeline(self):
"""Main wrapper for pipeline creation.
1. Runs clean_pipelines to clean up existing ones
2. determines which environments the pipeline needs
3. Renders all of the pipeline blocks as defined in configs
4. Runs post_pipeline to create pipeline
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6,062 | foremast/foremast | src/foremast/awslambda/awslambda.py | LambdaFunction._check_lambda | def _check_lambda(self):
"""Check if lambda function exists.
Returns:
True if function does exist
False if function does not exist
"""
exists = False
try:
self.lambda_client.get_function(FunctionName=self.app_name)
exists = True
... | python | def _check_lambda(self):
"""Check if lambda function exists.
Returns:
True if function does exist
False if function does not exist
"""
exists = False
try:
self.lambda_client.get_function(FunctionName=self.app_name)
exists = True
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6,063 | foremast/foremast | src/foremast/awslambda/awslambda.py | LambdaFunction._check_lambda_alias | def _check_lambda_alias(self):
"""Check if lambda alias exists.
Returns:
True if alias exists
False if alias does not exist
"""
aliases = self.lambda_client.list_aliases(FunctionName=self.app_name)
matched_alias = False
for alias in aliases['Alia... | python | def _check_lambda_alias(self):
"""Check if lambda alias exists.
Returns:
True if alias exists
False if alias does not exist
"""
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6,064 | foremast/foremast | src/foremast/awslambda/awslambda.py | LambdaFunction._vpc_config | def _vpc_config(self):
"""Get VPC config."""
if self.vpc_enabled:
subnets = get_subnets(env=self.env, region=self.region, purpose='internal')['subnet_ids'][self.region]
security_groups = self._get_sg_ids()
vpc_config = {'SubnetIds': subnets, 'SecurityGroupIds': secur... | python | def _vpc_config(self):
"""Get VPC config."""
if self.vpc_enabled:
subnets = get_subnets(env=self.env, region=self.region, purpose='internal')['subnet_ids'][self.region]
security_groups = self._get_sg_ids()
vpc_config = {'SubnetIds': subnets, 'SecurityGroupIds': secur... | [
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6,065 | foremast/foremast | src/foremast/awslambda/awslambda.py | LambdaFunction._get_sg_ids | def _get_sg_ids(self):
"""Get IDs for all defined security groups.
Returns:
list: security group IDs for all lambda_extras
"""
try:
lambda_extras = self.settings['security_groups']['lambda_extras']
except KeyError:
lambda_extras = []
... | python | def _get_sg_ids(self):
"""Get IDs for all defined security groups.
Returns:
list: security group IDs for all lambda_extras
"""
try:
lambda_extras = self.settings['security_groups']['lambda_extras']
except KeyError:
lambda_extras = []
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6,066 | foremast/foremast | src/foremast/awslambda/awslambda.py | LambdaFunction.update_function_configuration | def update_function_configuration(self, vpc_config):
"""Update existing Lambda function configuration.
Args:
vpc_config (dict): Dictionary of SubnetIds and SecurityGroupsIds for using
a VPC in lambda
"""
LOG.info('Updating configuration for lam... | python | def update_function_configuration(self, vpc_config):
"""Update existing Lambda function configuration.
Args:
vpc_config (dict): Dictionary of SubnetIds and SecurityGroupsIds for using
a VPC in lambda
"""
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6,067 | foremast/foremast | src/foremast/awslambda/awslambda.py | LambdaFunction.create_function | def create_function(self, vpc_config):
"""Create lambda function, configures lambda parameters.
We need to upload non-zero zip when creating function. Uploading
hello_world python lambda function since AWS doesn't care which
executable is in ZIP.
Args:
vpc_config (d... | python | def create_function(self, vpc_config):
"""Create lambda function, configures lambda parameters.
We need to upload non-zero zip when creating function. Uploading
hello_world python lambda function since AWS doesn't care which
executable is in ZIP.
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6,068 | foremast/foremast | src/foremast/awslambda/awslambda.py | LambdaFunction.create_lambda_function | def create_lambda_function(self):
"""Create or update Lambda function."""
vpc_config = self._vpc_config()
if self._check_lambda():
self.update_function_configuration(vpc_config)
else:
self.create_function(vpc_config)
if self._check_lambda_alias():
... | python | def create_lambda_function(self):
"""Create or update Lambda function."""
vpc_config = self._vpc_config()
if self._check_lambda():
self.update_function_configuration(vpc_config)
else:
self.create_function(vpc_config)
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6,069 | foremast/foremast | src/foremast/securitygroup/destroy_sg/destroy_sg.py | destroy_sg | def destroy_sg(app='', env='', region='', **_):
"""Destroy Security Group.
Args:
app (str): Spinnaker Application name.
env (str): Deployment environment.
region (str): Region name, e.g. us-east-1.
Returns:
True upon successful completion.
"""
vpc = get_vpc_id(accou... | python | def destroy_sg(app='', env='', region='', **_):
"""Destroy Security Group.
Args:
app (str): Spinnaker Application name.
env (str): Deployment environment.
region (str): Region name, e.g. us-east-1.
Returns:
True upon successful completion.
"""
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6,070 | foremast/foremast | src/foremast/s3/destroy_s3/destroy_s3.py | destroy_s3 | def destroy_s3(app='', env='dev', **_):
"""Destroy S3 Resources for _app_ in _env_.
Args:
app (str): Application name
env (str): Deployment environment/account name
Returns:
boolean: True if destroyed sucessfully
"""
session = boto3.Session(profile_name=env)
client = se... | python | def destroy_s3(app='', env='dev', **_):
"""Destroy S3 Resources for _app_ in _env_.
Args:
app (str): Application name
env (str): Deployment environment/account name
Returns:
boolean: True if destroyed sucessfully
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session = boto3.Session(profile_name=env)
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6,071 | foremast/foremast | src/foremast/app/__main__.py | main | def main():
"""Entry point for creating a Spinnaker application."""
# Setup parser
parser = argparse.ArgumentParser()
add_debug(parser)
add_app(parser)
parser.add_argument(
'--email', help='Email address to associate with application', default='PS-DevOpsTooling@example.com')
parser.a... | python | def main():
"""Entry point for creating a Spinnaker application."""
# Setup parser
parser = argparse.ArgumentParser()
add_debug(parser)
add_app(parser)
parser.add_argument(
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6,072 | foremast/foremast | src/foremast/awslambda/s3_event/destroy_s3_event/destroy_s3_event.py | destroy_s3_event | def destroy_s3_event(app, env, region):
"""Destroy S3 event.
Args:
app (str): Spinnaker Application name.
env (str): Deployment environment.
region (str): AWS region.
Returns:
bool: True upon successful completion.
"""
# TODO: how do we know which bucket to process ... | python | def destroy_s3_event(app, env, region):
"""Destroy S3 event.
Args:
app (str): Spinnaker Application name.
env (str): Deployment environment.
region (str): AWS region.
Returns:
bool: True upon successful completion.
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6,073 | foremast/foremast | src/foremast/iam/destroy_iam/destroy_iam.py | destroy_iam | def destroy_iam(app='', env='dev', **_):
"""Destroy IAM Resources.
Args:
app (str): Spinnaker Application name.
env (str): Deployment environment, i.e. dev, stage, prod.
Returns:
True upon successful completion.
"""
session = boto3.Session(profile_name=env)
client = ses... | python | def destroy_iam(app='', env='dev', **_):
"""Destroy IAM Resources.
Args:
app (str): Spinnaker Application name.
env (str): Deployment environment, i.e. dev, stage, prod.
Returns:
True upon successful completion.
"""
session = boto3.Session(profile_name=env)
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app (str): Spinnaker Application name.
env (str): Deployment environment, i.e. dev, stage, prod.
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6,074 | foremast/foremast | src/foremast/utils/roles.py | get_role_arn | def get_role_arn(role_name, env, region):
"""Get role ARN given role name.
Args:
role_name (str): Role name to lookup
env (str): Environment in which to lookup
region (str): Region
Returns:
ARN if role found
"""
session = boto3.Session(profile_name=env, region_name... | python | def get_role_arn(role_name, env, region):
"""Get role ARN given role name.
Args:
role_name (str): Role name to lookup
env (str): Environment in which to lookup
region (str): Region
Returns:
ARN if role found
"""
session = boto3.Session(profile_name=env, region_name... | [
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6,075 | foremast/foremast | src/foremast/iam/construct_policy.py | render_policy_template | def render_policy_template( # pylint: disable=too-many-arguments
account_number='',
app='coreforrest',
env='dev',
group='forrest',
items=None,
pipeline_settings=None,
region='us-east-1',
service=''):
"""Render IAM Policy template.
To support mult... | python | def render_policy_template( # pylint: disable=too-many-arguments
account_number='',
app='coreforrest',
env='dev',
group='forrest',
items=None,
pipeline_settings=None,
region='us-east-1',
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account_number (str): AWS Account number.
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6,076 | foremast/foremast | src/foremast/iam/construct_policy.py | construct_policy | def construct_policy(app='coreforrest', env='dev', group='forrest', region='us-east-1', pipeline_settings=None):
"""Assemble IAM Policy for _app_.
Args:
app (str): Name of Spinnaker Application.
env (str): Environment/Account in AWS
group (str):A Application group/namespace
regi... | python | def construct_policy(app='coreforrest', env='dev', group='forrest', region='us-east-1', pipeline_settings=None):
"""Assemble IAM Policy for _app_.
Args:
app (str): Name of Spinnaker Application.
env (str): Environment/Account in AWS
group (str):A Application group/namespace
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6,077 | foremast/foremast | src/foremast/validate.py | validate_gate | def validate_gate():
"""Check Gate connection."""
try:
credentials = get_env_credential()
LOG.debug('Found credentials: %s', credentials)
LOG.info('Gate working.')
except TypeError:
LOG.fatal('Gate connection not valid: API_URL = %s', API_URL) | python | def validate_gate():
"""Check Gate connection."""
try:
credentials = get_env_credential()
LOG.debug('Found credentials: %s', credentials)
LOG.info('Gate working.')
except TypeError:
LOG.fatal('Gate connection not valid: API_URL = %s', API_URL) | [
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6,078 | foremast/foremast | src/foremast/awslambda/s3_event/s3_event.py | create_s3_event | def create_s3_event(app_name, env, region, bucket, triggers):
"""Create S3 lambda events from triggers
Args:
app_name (str): name of the lambda function
env (str): Environment/Account for lambda function
region (str): AWS region of the lambda function
triggers (list): List of tr... | python | def create_s3_event(app_name, env, region, bucket, triggers):
"""Create S3 lambda events from triggers
Args:
app_name (str): name of the lambda function
env (str): Environment/Account for lambda function
region (str): AWS region of the lambda function
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6,079 | foremast/foremast | src/foremast/utils/generate_filename.py | generate_packer_filename | def generate_packer_filename(provider, region, builder):
"""Generate a filename to be used by packer.
Args:
provider (str): Name of Spinnaker provider.
region (str): Name of provider region to use.
builder (str): Name of builder process type.
Returns:
str: Generated filenam... | python | def generate_packer_filename(provider, region, builder):
"""Generate a filename to be used by packer.
Args:
provider (str): Name of Spinnaker provider.
region (str): Name of provider region to use.
builder (str): Name of builder process type.
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str: Generated filenam... | [
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provider (str): Name of Spinnaker provider.
region (str): Name of provider region to use.
builder (str): Name of builder process type.
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6,080 | foremast/foremast | src/foremast/utils/templates.py | get_template | def get_template(template_file='', **kwargs):
"""Get the Jinja2 template and renders with dict _kwargs_.
Args:
template_file (str): name of the template file
kwargs: Keywords to use for rendering the Jinja2 template.
Returns:
String of rendered JSON template.
"""
template ... | python | def get_template(template_file='', **kwargs):
"""Get the Jinja2 template and renders with dict _kwargs_.
Args:
template_file (str): name of the template file
kwargs: Keywords to use for rendering the Jinja2 template.
Returns:
String of rendered JSON template.
"""
template ... | [
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6,081 | foremast/foremast | src/foremast/pipeline/renumerate_stages.py | renumerate_stages | def renumerate_stages(pipeline):
"""Renumber Pipeline Stage reference IDs to account for dependencies.
stage order is defined in the templates. The ``refId`` field dictates
if a stage should be mainline or parallel to other stages.
* ``master`` - A mainline required stage. Other stages depend on i... | python | def renumerate_stages(pipeline):
"""Renumber Pipeline Stage reference IDs to account for dependencies.
stage order is defined in the templates. The ``refId`` field dictates
if a stage should be mainline or parallel to other stages.
* ``master`` - A mainline required stage. Other stages depend on i... | [
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6,082 | foremast/foremast | src/foremast/utils/tasks.py | post_task | def post_task(task_data, task_uri='/tasks'):
"""Create Spinnaker Task.
Args:
task_data (str): Task JSON definition.
Returns:
str: Spinnaker Task ID.
Raises:
AssertionError: Error response from Spinnaker.
"""
url = '{}/{}'.format(API_URL, task_uri.lstrip('/'))
if ... | python | def post_task(task_data, task_uri='/tasks'):
"""Create Spinnaker Task.
Args:
task_data (str): Task JSON definition.
Returns:
str: Spinnaker Task ID.
Raises:
AssertionError: Error response from Spinnaker.
"""
url = '{}/{}'.format(API_URL, task_uri.lstrip('/'))
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6,083 | foremast/foremast | src/foremast/utils/tasks.py | _check_task | def _check_task(taskid):
"""Check Spinnaker Task status.
Args:
taskid (str): Existing Spinnaker Task ID.
Returns:
str: Task status.
"""
try:
taskurl = taskid.get('ref', '0000')
except AttributeError:
taskurl = taskid
taskid = taskurl.split('/tasks/')[-1]
... | python | def _check_task(taskid):
"""Check Spinnaker Task status.
Args:
taskid (str): Existing Spinnaker Task ID.
Returns:
str: Task status.
"""
try:
taskurl = taskid.get('ref', '0000')
except AttributeError:
taskurl = taskid
taskid = taskurl.split('/tasks/')[-1]
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6,084 | foremast/foremast | src/foremast/utils/tasks.py | check_task | def check_task(taskid, timeout=DEFAULT_TASK_TIMEOUT, wait=2):
"""Wrap check_task.
Args:
taskid (str): Existing Spinnaker Task ID.
timeout (int, optional): Consider Task failed after given seconds.
wait (int, optional): Seconds to pause between polling attempts.
Returns:
str... | python | def check_task(taskid, timeout=DEFAULT_TASK_TIMEOUT, wait=2):
"""Wrap check_task.
Args:
taskid (str): Existing Spinnaker Task ID.
timeout (int, optional): Consider Task failed after given seconds.
wait (int, optional): Seconds to pause between polling attempts.
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6,085 | foremast/foremast | src/foremast/utils/tasks.py | wait_for_task | def wait_for_task(task_data, task_uri='/tasks'):
"""Run task and check the result.
Args:
task_data (str): the task json to execute
Returns:
str: Task status.
"""
taskid = post_task(task_data, task_uri)
if isinstance(task_data, str):
json_data = json.loads(task_data)
... | python | def wait_for_task(task_data, task_uri='/tasks'):
"""Run task and check the result.
Args:
task_data (str): the task json to execute
Returns:
str: Task status.
"""
taskid = post_task(task_data, task_uri)
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json_data = json.loads(task_data)
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6,086 | foremast/foremast | src/foremast/s3/__main__.py | main | def main():
"""Create application.properties for a given application."""
logging.basicConfig(format=LOGGING_FORMAT)
parser = argparse.ArgumentParser(description=main.__doc__)
add_debug(parser)
add_app(parser)
add_env(parser)
add_properties(parser)
add_region(parser)
add_artifact_pa... | python | def main():
"""Create application.properties for a given application."""
logging.basicConfig(format=LOGGING_FORMAT)
parser = argparse.ArgumentParser(description=main.__doc__)
add_debug(parser)
add_app(parser)
add_env(parser)
add_properties(parser)
add_region(parser)
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6,087 | foremast/foremast | src/foremast/s3/create_archaius.py | init_properties | def init_properties(env='dev', app='unnecessary', **_):
"""Make sure _application.properties_ file exists in S3.
For Applications with Archaius support, there needs to be a file where the
cloud environment variable points to.
Args:
env (str): Deployment environment/account, i.e. dev, stage, pr... | python | def init_properties(env='dev', app='unnecessary', **_):
"""Make sure _application.properties_ file exists in S3.
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6,088 | foremast/foremast | src/foremast/awslambda/cloudwatch_event/cloudwatch_event.py | create_cloudwatch_event | def create_cloudwatch_event(app_name, env, region, rules):
"""Create cloudwatch event for lambda from rules.
Args:
app_name (str): name of the lambda function
env (str): Environment/Account for lambda function
region (str): AWS region of the lambda function
rules (dict): Trigger... | python | def create_cloudwatch_event(app_name, env, region, rules):
"""Create cloudwatch event for lambda from rules.
Args:
app_name (str): name of the lambda function
env (str): Environment/Account for lambda function
region (str): AWS region of the lambda function
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... | Create cloudwatch event for lambda from rules.
Args:
app_name (str): name of the lambda function
env (str): Environment/Account for lambda function
region (str): AWS region of the lambda function
rules (dict): Trigger rules from the settings | [
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6,089 | foremast/foremast | src/foremast/awslambda/api_gateway_event/api_gateway_event.py | APIGateway.find_api_id | def find_api_id(self):
"""Given API name, find API ID."""
allapis = self.client.get_rest_apis()
api_name = self.trigger_settings['api_name']
api_id = None
for api in allapis['items']:
if api['name'] == api_name:
api_id = api['id']
self.... | python | def find_api_id(self):
"""Given API name, find API ID."""
allapis = self.client.get_rest_apis()
api_name = self.trigger_settings['api_name']
api_id = None
for api in allapis['items']:
if api['name'] == api_name:
api_id = api['id']
self.... | [
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6,090 | foremast/foremast | src/foremast/awslambda/api_gateway_event/api_gateway_event.py | APIGateway.find_resource_ids | def find_resource_ids(self):
"""Given a resource path and API Id, find resource Id."""
all_resources = self.client.get_resources(restApiId=self.api_id)
parent_id = None
resource_id = None
for resource in all_resources['items']:
if resource['path'] == "/":
... | python | def find_resource_ids(self):
"""Given a resource path and API Id, find resource Id."""
all_resources = self.client.get_resources(restApiId=self.api_id)
parent_id = None
resource_id = None
for resource in all_resources['items']:
if resource['path'] == "/":
... | [
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6,091 | foremast/foremast | src/foremast/awslambda/api_gateway_event/api_gateway_event.py | APIGateway.add_lambda_integration | def add_lambda_integration(self):
"""Attach lambda found to API."""
lambda_uri = self.generate_uris()['lambda_uri']
self.client.put_integration(
restApiId=self.api_id,
resourceId=self.resource_id,
httpMethod=self.trigger_settings['method'],
integra... | python | def add_lambda_integration(self):
"""Attach lambda found to API."""
lambda_uri = self.generate_uris()['lambda_uri']
self.client.put_integration(
restApiId=self.api_id,
resourceId=self.resource_id,
httpMethod=self.trigger_settings['method'],
integra... | [
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6,092 | foremast/foremast | src/foremast/awslambda/api_gateway_event/api_gateway_event.py | APIGateway.add_integration_response | def add_integration_response(self):
"""Add an intergation response to the API for the lambda integration."""
self.client.put_integration_response(
restApiId=self.api_id,
resourceId=self.resource_id,
httpMethod=self.trigger_settings['method'],
statusCode='2... | python | def add_integration_response(self):
"""Add an intergation response to the API for the lambda integration."""
self.client.put_integration_response(
restApiId=self.api_id,
resourceId=self.resource_id,
httpMethod=self.trigger_settings['method'],
statusCode='2... | [
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6,093 | foremast/foremast | src/foremast/awslambda/api_gateway_event/api_gateway_event.py | APIGateway.add_permission | def add_permission(self):
"""Add permission to Lambda for the API Trigger."""
statement_id = '{}_api_{}'.format(self.app_name, self.trigger_settings['api_name'])
principal = 'apigateway.amazonaws.com'
lambda_alias_arn = get_lambda_alias_arn(self.app_name, self.env, self.region)
l... | python | def add_permission(self):
"""Add permission to Lambda for the API Trigger."""
statement_id = '{}_api_{}'.format(self.app_name, self.trigger_settings['api_name'])
principal = 'apigateway.amazonaws.com'
lambda_alias_arn = get_lambda_alias_arn(self.app_name, self.env, self.region)
l... | [
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6,094 | foremast/foremast | src/foremast/awslambda/api_gateway_event/api_gateway_event.py | APIGateway.create_api_deployment | def create_api_deployment(self):
"""Create API deployment of ENV name."""
try:
self.client.create_deployment(restApiId=self.api_id, stageName=self.env)
self.log.info('Created a deployment resource.')
except botocore.exceptions.ClientError as error:
error_code ... | python | def create_api_deployment(self):
"""Create API deployment of ENV name."""
try:
self.client.create_deployment(restApiId=self.api_id, stageName=self.env)
self.log.info('Created a deployment resource.')
except botocore.exceptions.ClientError as error:
error_code ... | [
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6,095 | foremast/foremast | src/foremast/awslambda/api_gateway_event/api_gateway_event.py | APIGateway.create_api_key | def create_api_key(self):
"""Create API Key for API access."""
apikeys = self.client.get_api_keys()
for key in apikeys['items']:
if key['name'] == self.app_name:
self.log.info("Key %s already exists", self.app_name)
break
else:
self... | python | def create_api_key(self):
"""Create API Key for API access."""
apikeys = self.client.get_api_keys()
for key in apikeys['items']:
if key['name'] == self.app_name:
self.log.info("Key %s already exists", self.app_name)
break
else:
self... | [
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6,096 | foremast/foremast | src/foremast/awslambda/api_gateway_event/api_gateway_event.py | APIGateway._format_base_path | def _format_base_path(self, api_name):
"""Format the base path name."""
name = self.app_name
if self.app_name != api_name:
name = '{0}-{1}'.format(self.app_name, api_name)
return name | python | def _format_base_path(self, api_name):
"""Format the base path name."""
name = self.app_name
if self.app_name != api_name:
name = '{0}-{1}'.format(self.app_name, api_name)
return name | [
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6,097 | foremast/foremast | src/foremast/awslambda/api_gateway_event/api_gateway_event.py | APIGateway.update_api_mappings | def update_api_mappings(self):
"""Create a cname for the API deployment."""
response_provider = None
response_action = None
domain = self.generated.apigateway()['domain']
try:
response_provider = self.client.create_base_path_mapping(
domainName=domain,... | python | def update_api_mappings(self):
"""Create a cname for the API deployment."""
response_provider = None
response_action = None
domain = self.generated.apigateway()['domain']
try:
response_provider = self.client.create_base_path_mapping(
domainName=domain,... | [
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6,098 | foremast/foremast | src/foremast/awslambda/api_gateway_event/api_gateway_event.py | APIGateway.generate_uris | def generate_uris(self):
"""Generate several lambda uris."""
lambda_arn = "arn:aws:execute-api:{0}:{1}:{2}/*/{3}/{4}".format(self.region, self.account_id, self.api_id,
self.trigger_settings['method'],
... | python | def generate_uris(self):
"""Generate several lambda uris."""
lambda_arn = "arn:aws:execute-api:{0}:{1}:{2}/*/{3}/{4}".format(self.region, self.account_id, self.api_id,
self.trigger_settings['method'],
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] | fb70f29b8ce532f061685a17d120486e47b215ba | https://github.com/foremast/foremast/blob/fb70f29b8ce532f061685a17d120486e47b215ba/src/foremast/awslambda/api_gateway_event/api_gateway_event.py#L212-L225 |
6,099 | foremast/foremast | src/foremast/awslambda/api_gateway_event/api_gateway_event.py | APIGateway.create_api | def create_api(self):
"""Create the REST API."""
created_api = self.client.create_rest_api(name=self.trigger_settings.get('api_name', self.app_name))
api_id = created_api['id']
self.log.info("Successfully created API")
return api_id | python | def create_api(self):
"""Create the REST API."""
created_api = self.client.create_rest_api(name=self.trigger_settings.get('api_name', self.app_name))
api_id = created_api['id']
self.log.info("Successfully created API")
return api_id | [
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