id
int32
0
252k
repo
stringlengths
7
55
path
stringlengths
4
127
func_name
stringlengths
1
88
original_string
stringlengths
75
19.8k
language
stringclasses
1 value
code
stringlengths
75
19.8k
code_tokens
list
docstring
stringlengths
3
17.3k
docstring_tokens
list
sha
stringlengths
40
40
url
stringlengths
87
242
4,000
HazyResearch/pdftotree
pdftotree/utils/pdf/grid.py
_retain_centroids
def _retain_centroids(numbers, thres): """Only keep one number for each cluster within thres of each other""" numbers.sort() prev = -1 ret = [] for n in numbers: if prev < 0 or n - prev > thres: ret.append(n) prev = n return ret
python
def _retain_centroids(numbers, thres): """Only keep one number for each cluster within thres of each other""" numbers.sort() prev = -1 ret = [] for n in numbers: if prev < 0 or n - prev > thres: ret.append(n) prev = n return ret
[ "def", "_retain_centroids", "(", "numbers", ",", "thres", ")", ":", "numbers", ".", "sort", "(", ")", "prev", "=", "-", "1", "ret", "=", "[", "]", "for", "n", "in", "numbers", ":", "if", "prev", "<", "0", "or", "n", "-", "prev", ">", "thres", "...
Only keep one number for each cluster within thres of each other
[ "Only", "keep", "one", "number", "for", "each", "cluster", "within", "thres", "of", "each", "other" ]
5890d668b475d5d3058d1d886aafbfd83268c440
https://github.com/HazyResearch/pdftotree/blob/5890d668b475d5d3058d1d886aafbfd83268c440/pdftotree/utils/pdf/grid.py#L178-L187
4,001
HazyResearch/pdftotree
pdftotree/utils/pdf/grid.py
_split_vlines_hlines
def _split_vlines_hlines(lines): """Separates lines into horizontal and vertical ones""" vlines, hlines = [], [] for line in lines: (vlines if line.x1 - line.x0 < 0.1 else hlines).append(line) return vlines, hlines
python
def _split_vlines_hlines(lines): """Separates lines into horizontal and vertical ones""" vlines, hlines = [], [] for line in lines: (vlines if line.x1 - line.x0 < 0.1 else hlines).append(line) return vlines, hlines
[ "def", "_split_vlines_hlines", "(", "lines", ")", ":", "vlines", ",", "hlines", "=", "[", "]", ",", "[", "]", "for", "line", "in", "lines", ":", "(", "vlines", "if", "line", ".", "x1", "-", "line", ".", "x0", "<", "0.1", "else", "hlines", ")", "....
Separates lines into horizontal and vertical ones
[ "Separates", "lines", "into", "horizontal", "and", "vertical", "ones" ]
5890d668b475d5d3058d1d886aafbfd83268c440
https://github.com/HazyResearch/pdftotree/blob/5890d668b475d5d3058d1d886aafbfd83268c440/pdftotree/utils/pdf/grid.py#L190-L195
4,002
HazyResearch/pdftotree
pdftotree/utils/pdf/grid.py
_npiter
def _npiter(arr): """Wrapper for iterating numpy array""" for a in np.nditer(arr, flags=["refs_ok"]): c = a.item() if c is not None: yield c
python
def _npiter(arr): """Wrapper for iterating numpy array""" for a in np.nditer(arr, flags=["refs_ok"]): c = a.item() if c is not None: yield c
[ "def", "_npiter", "(", "arr", ")", ":", "for", "a", "in", "np", ".", "nditer", "(", "arr", ",", "flags", "=", "[", "\"refs_ok\"", "]", ")", ":", "c", "=", "a", ".", "item", "(", ")", "if", "c", "is", "not", "None", ":", "yield", "c" ]
Wrapper for iterating numpy array
[ "Wrapper", "for", "iterating", "numpy", "array" ]
5890d668b475d5d3058d1d886aafbfd83268c440
https://github.com/HazyResearch/pdftotree/blob/5890d668b475d5d3058d1d886aafbfd83268c440/pdftotree/utils/pdf/grid.py#L198-L203
4,003
HazyResearch/pdftotree
pdftotree/utils/pdf/grid.py
Grid.get_normalized_grid
def get_normalized_grid(self): """ Analyzes subcell structure """ log = logging.getLogger(__name__) # Resolve multirow mentions, TODO: validate against all PDFs # subcol_count = 0 mega_rows = [] for row_id, row in enumerate(self._grid): # maps...
python
def get_normalized_grid(self): """ Analyzes subcell structure """ log = logging.getLogger(__name__) # Resolve multirow mentions, TODO: validate against all PDFs # subcol_count = 0 mega_rows = [] for row_id, row in enumerate(self._grid): # maps...
[ "def", "get_normalized_grid", "(", "self", ")", ":", "log", "=", "logging", ".", "getLogger", "(", "__name__", ")", "# Resolve multirow mentions, TODO: validate against all PDFs", "# subcol_count = 0", "mega_rows", "=", "[", "]", "for", "row_id", ",", "row", "in", ...
Analyzes subcell structure
[ "Analyzes", "subcell", "structure" ]
5890d668b475d5d3058d1d886aafbfd83268c440
https://github.com/HazyResearch/pdftotree/blob/5890d668b475d5d3058d1d886aafbfd83268c440/pdftotree/utils/pdf/grid.py#L118-L144
4,004
HazyResearch/pdftotree
pdftotree/utils/pdf/grid.py
Grid._mark_grid_bounds
def _mark_grid_bounds(self, plane, region_bbox): """ Assume all lines define a complete grid over the region_bbox. Detect which lines are missing so that we can recover merged cells. """ # Grid boundaries vbars = np.zeros([self.num_rows, self.num_cols + 1], dtype=...
python
def _mark_grid_bounds(self, plane, region_bbox): """ Assume all lines define a complete grid over the region_bbox. Detect which lines are missing so that we can recover merged cells. """ # Grid boundaries vbars = np.zeros([self.num_rows, self.num_cols + 1], dtype=...
[ "def", "_mark_grid_bounds", "(", "self", ",", "plane", ",", "region_bbox", ")", ":", "# Grid boundaries", "vbars", "=", "np", ".", "zeros", "(", "[", "self", ".", "num_rows", ",", "self", ".", "num_cols", "+", "1", "]", ",", "dtype", "=", "np", ".", ...
Assume all lines define a complete grid over the region_bbox. Detect which lines are missing so that we can recover merged cells.
[ "Assume", "all", "lines", "define", "a", "complete", "grid", "over", "the", "region_bbox", ".", "Detect", "which", "lines", "are", "missing", "so", "that", "we", "can", "recover", "merged", "cells", "." ]
5890d668b475d5d3058d1d886aafbfd83268c440
https://github.com/HazyResearch/pdftotree/blob/5890d668b475d5d3058d1d886aafbfd83268c440/pdftotree/utils/pdf/grid.py#L146-L170
4,005
HazyResearch/pdftotree
pdftotree/utils/pdf/vector_utils.py
vectorize
def vectorize(e, tolerance=0.1): """ vectorizes the pdf object's bounding box min_width is the width under which we consider it a line instead of a big rectangle """ tolerance = max(tolerance, e.linewidth) is_high = e.height > tolerance is_wide = e.width > tolerance # if skewed towar...
python
def vectorize(e, tolerance=0.1): """ vectorizes the pdf object's bounding box min_width is the width under which we consider it a line instead of a big rectangle """ tolerance = max(tolerance, e.linewidth) is_high = e.height > tolerance is_wide = e.width > tolerance # if skewed towar...
[ "def", "vectorize", "(", "e", ",", "tolerance", "=", "0.1", ")", ":", "tolerance", "=", "max", "(", "tolerance", ",", "e", ".", "linewidth", ")", "is_high", "=", "e", ".", "height", ">", "tolerance", "is_wide", "=", "e", ".", "width", ">", "tolerance...
vectorizes the pdf object's bounding box min_width is the width under which we consider it a line instead of a big rectangle
[ "vectorizes", "the", "pdf", "object", "s", "bounding", "box", "min_width", "is", "the", "width", "under", "which", "we", "consider", "it", "a", "line", "instead", "of", "a", "big", "rectangle" ]
5890d668b475d5d3058d1d886aafbfd83268c440
https://github.com/HazyResearch/pdftotree/blob/5890d668b475d5d3058d1d886aafbfd83268c440/pdftotree/utils/pdf/vector_utils.py#L36-L49
4,006
HazyResearch/pdftotree
pdftotree/utils/pdf/vector_utils.py
aligned
def aligned(e1, e2): """ alignment is determined by two boxes having one exactly the same attribute, which could mean parallel, perpendicularly forming a corner etc. """ return ( any(close(c1, c2) for c1, c2 in zip(e1.bbox, e2.bbox)) or x_center_aligned(e1, e2) or y_cente...
python
def aligned(e1, e2): """ alignment is determined by two boxes having one exactly the same attribute, which could mean parallel, perpendicularly forming a corner etc. """ return ( any(close(c1, c2) for c1, c2 in zip(e1.bbox, e2.bbox)) or x_center_aligned(e1, e2) or y_cente...
[ "def", "aligned", "(", "e1", ",", "e2", ")", ":", "return", "(", "any", "(", "close", "(", "c1", ",", "c2", ")", "for", "c1", ",", "c2", "in", "zip", "(", "e1", ".", "bbox", ",", "e2", ".", "bbox", ")", ")", "or", "x_center_aligned", "(", "e1...
alignment is determined by two boxes having one exactly the same attribute, which could mean parallel, perpendicularly forming a corner etc.
[ "alignment", "is", "determined", "by", "two", "boxes", "having", "one", "exactly", "the", "same", "attribute", "which", "could", "mean", "parallel", "perpendicularly", "forming", "a", "corner", "etc", "." ]
5890d668b475d5d3058d1d886aafbfd83268c440
https://github.com/HazyResearch/pdftotree/blob/5890d668b475d5d3058d1d886aafbfd83268c440/pdftotree/utils/pdf/vector_utils.py#L52-L62
4,007
HazyResearch/pdftotree
pdftotree/utils/pdf/vector_utils.py
bound_bboxes
def bound_bboxes(bboxes): """ Finds the minimal bbox that contains all given bboxes """ group_x0 = min(map(lambda l: l[x0], bboxes)) group_y0 = min(map(lambda l: l[y0], bboxes)) group_x1 = max(map(lambda l: l[x1], bboxes)) group_y1 = max(map(lambda l: l[y1], bboxes)) return (group_x0, gr...
python
def bound_bboxes(bboxes): """ Finds the minimal bbox that contains all given bboxes """ group_x0 = min(map(lambda l: l[x0], bboxes)) group_y0 = min(map(lambda l: l[y0], bboxes)) group_x1 = max(map(lambda l: l[x1], bboxes)) group_y1 = max(map(lambda l: l[y1], bboxes)) return (group_x0, gr...
[ "def", "bound_bboxes", "(", "bboxes", ")", ":", "group_x0", "=", "min", "(", "map", "(", "lambda", "l", ":", "l", "[", "x0", "]", ",", "bboxes", ")", ")", "group_y0", "=", "min", "(", "map", "(", "lambda", "l", ":", "l", "[", "y0", "]", ",", ...
Finds the minimal bbox that contains all given bboxes
[ "Finds", "the", "minimal", "bbox", "that", "contains", "all", "given", "bboxes" ]
5890d668b475d5d3058d1d886aafbfd83268c440
https://github.com/HazyResearch/pdftotree/blob/5890d668b475d5d3058d1d886aafbfd83268c440/pdftotree/utils/pdf/vector_utils.py#L106-L114
4,008
HazyResearch/pdftotree
pdftotree/utils/pdf/vector_utils.py
bound_elems
def bound_elems(elems): """ Finds the minimal bbox that contains all given elems """ group_x0 = min(map(lambda l: l.x0, elems)) group_y0 = min(map(lambda l: l.y0, elems)) group_x1 = max(map(lambda l: l.x1, elems)) group_y1 = max(map(lambda l: l.y1, elems)) return (group_x0, group_y0, gro...
python
def bound_elems(elems): """ Finds the minimal bbox that contains all given elems """ group_x0 = min(map(lambda l: l.x0, elems)) group_y0 = min(map(lambda l: l.y0, elems)) group_x1 = max(map(lambda l: l.x1, elems)) group_y1 = max(map(lambda l: l.y1, elems)) return (group_x0, group_y0, gro...
[ "def", "bound_elems", "(", "elems", ")", ":", "group_x0", "=", "min", "(", "map", "(", "lambda", "l", ":", "l", ".", "x0", ",", "elems", ")", ")", "group_y0", "=", "min", "(", "map", "(", "lambda", "l", ":", "l", ".", "y0", ",", "elems", ")", ...
Finds the minimal bbox that contains all given elems
[ "Finds", "the", "minimal", "bbox", "that", "contains", "all", "given", "elems" ]
5890d668b475d5d3058d1d886aafbfd83268c440
https://github.com/HazyResearch/pdftotree/blob/5890d668b475d5d3058d1d886aafbfd83268c440/pdftotree/utils/pdf/vector_utils.py#L117-L125
4,009
HazyResearch/pdftotree
pdftotree/utils/pdf/vector_utils.py
intersect
def intersect(a, b): """ Check if two rectangles intersect """ if a[x0] == a[x1] or a[y0] == a[y1]: return False if b[x0] == b[x1] or b[y0] == b[y1]: return False return a[x0] <= b[x1] and b[x0] <= a[x1] and a[y0] <= b[y1] and b[y0] <= a[y1]
python
def intersect(a, b): """ Check if two rectangles intersect """ if a[x0] == a[x1] or a[y0] == a[y1]: return False if b[x0] == b[x1] or b[y0] == b[y1]: return False return a[x0] <= b[x1] and b[x0] <= a[x1] and a[y0] <= b[y1] and b[y0] <= a[y1]
[ "def", "intersect", "(", "a", ",", "b", ")", ":", "if", "a", "[", "x0", "]", "==", "a", "[", "x1", "]", "or", "a", "[", "y0", "]", "==", "a", "[", "y1", "]", ":", "return", "False", "if", "b", "[", "x0", "]", "==", "b", "[", "x1", "]", ...
Check if two rectangles intersect
[ "Check", "if", "two", "rectangles", "intersect" ]
5890d668b475d5d3058d1d886aafbfd83268c440
https://github.com/HazyResearch/pdftotree/blob/5890d668b475d5d3058d1d886aafbfd83268c440/pdftotree/utils/pdf/vector_utils.py#L128-L136
4,010
HazyResearch/pdftotree
pdftotree/utils/pdf/vector_utils.py
reading_order
def reading_order(e1, e2): """ A comparator to sort bboxes from top to bottom, left to right """ b1 = e1.bbox b2 = e2.bbox if round(b1[y0]) == round(b2[y0]) or round(b1[y1]) == round(b2[y1]): return float_cmp(b1[x0], b2[x0]) return float_cmp(b1[y0], b2[y0])
python
def reading_order(e1, e2): """ A comparator to sort bboxes from top to bottom, left to right """ b1 = e1.bbox b2 = e2.bbox if round(b1[y0]) == round(b2[y0]) or round(b1[y1]) == round(b2[y1]): return float_cmp(b1[x0], b2[x0]) return float_cmp(b1[y0], b2[y0])
[ "def", "reading_order", "(", "e1", ",", "e2", ")", ":", "b1", "=", "e1", ".", "bbox", "b2", "=", "e2", ".", "bbox", "if", "round", "(", "b1", "[", "y0", "]", ")", "==", "round", "(", "b2", "[", "y0", "]", ")", "or", "round", "(", "b1", "[",...
A comparator to sort bboxes from top to bottom, left to right
[ "A", "comparator", "to", "sort", "bboxes", "from", "top", "to", "bottom", "left", "to", "right" ]
5890d668b475d5d3058d1d886aafbfd83268c440
https://github.com/HazyResearch/pdftotree/blob/5890d668b475d5d3058d1d886aafbfd83268c440/pdftotree/utils/pdf/vector_utils.py#L155-L163
4,011
HazyResearch/pdftotree
pdftotree/utils/pdf/vector_utils.py
xy_reading_order
def xy_reading_order(e1, e2): """ A comparator to sort bboxes from left to right, top to bottom """ b1 = e1.bbox b2 = e2.bbox if round(b1[x0]) == round(b2[x0]): return float_cmp(b1[y0], b2[y0]) return float_cmp(b1[x0], b2[x0])
python
def xy_reading_order(e1, e2): """ A comparator to sort bboxes from left to right, top to bottom """ b1 = e1.bbox b2 = e2.bbox if round(b1[x0]) == round(b2[x0]): return float_cmp(b1[y0], b2[y0]) return float_cmp(b1[x0], b2[x0])
[ "def", "xy_reading_order", "(", "e1", ",", "e2", ")", ":", "b1", "=", "e1", ".", "bbox", "b2", "=", "e2", ".", "bbox", "if", "round", "(", "b1", "[", "x0", "]", ")", "==", "round", "(", "b2", "[", "x0", "]", ")", ":", "return", "float_cmp", "...
A comparator to sort bboxes from left to right, top to bottom
[ "A", "comparator", "to", "sort", "bboxes", "from", "left", "to", "right", "top", "to", "bottom" ]
5890d668b475d5d3058d1d886aafbfd83268c440
https://github.com/HazyResearch/pdftotree/blob/5890d668b475d5d3058d1d886aafbfd83268c440/pdftotree/utils/pdf/vector_utils.py#L166-L174
4,012
HazyResearch/pdftotree
pdftotree/utils/pdf/vector_utils.py
column_order
def column_order(b1, b2): """ A comparator that sorts bboxes first by "columns", where a column is made up of all bboxes that overlap, then by vertical position in each column. b1 = [b1.type, b1.top, b1.left, b1.bottom, b1.right] b2 = [b2.type, b2.top, b2.left, b2.bottom, b2.right] """ (top...
python
def column_order(b1, b2): """ A comparator that sorts bboxes first by "columns", where a column is made up of all bboxes that overlap, then by vertical position in each column. b1 = [b1.type, b1.top, b1.left, b1.bottom, b1.right] b2 = [b2.type, b2.top, b2.left, b2.bottom, b2.right] """ (top...
[ "def", "column_order", "(", "b1", ",", "b2", ")", ":", "(", "top", ",", "left", ",", "bottom", ")", "=", "(", "1", ",", "2", ",", "3", ")", "# TODO(senwu): Reimplement the functionality of this comparator to", "# detect the number of columns, and sort those in reading...
A comparator that sorts bboxes first by "columns", where a column is made up of all bboxes that overlap, then by vertical position in each column. b1 = [b1.type, b1.top, b1.left, b1.bottom, b1.right] b2 = [b2.type, b2.top, b2.left, b2.bottom, b2.right]
[ "A", "comparator", "that", "sorts", "bboxes", "first", "by", "columns", "where", "a", "column", "is", "made", "up", "of", "all", "bboxes", "that", "overlap", "then", "by", "vertical", "position", "in", "each", "column", "." ]
5890d668b475d5d3058d1d886aafbfd83268c440
https://github.com/HazyResearch/pdftotree/blob/5890d668b475d5d3058d1d886aafbfd83268c440/pdftotree/utils/pdf/vector_utils.py#L177-L193
4,013
HazyResearch/pdftotree
pdftotree/utils/pdf/vector_utils.py
merge_intervals
def merge_intervals(elems, overlap_thres=2.0): """ Project in x axis Sort by start Go through segments and keep max x1 Return a list of non-overlapping intervals """ overlap_thres = max(0.0, overlap_thres) ordered = sorted(elems, key=lambda e: e.x0) intervals = [] cur = [-overl...
python
def merge_intervals(elems, overlap_thres=2.0): """ Project in x axis Sort by start Go through segments and keep max x1 Return a list of non-overlapping intervals """ overlap_thres = max(0.0, overlap_thres) ordered = sorted(elems, key=lambda e: e.x0) intervals = [] cur = [-overl...
[ "def", "merge_intervals", "(", "elems", ",", "overlap_thres", "=", "2.0", ")", ":", "overlap_thres", "=", "max", "(", "0.0", ",", "overlap_thres", ")", "ordered", "=", "sorted", "(", "elems", ",", "key", "=", "lambda", "e", ":", "e", ".", "x0", ")", ...
Project in x axis Sort by start Go through segments and keep max x1 Return a list of non-overlapping intervals
[ "Project", "in", "x", "axis", "Sort", "by", "start", "Go", "through", "segments", "and", "keep", "max", "x1" ]
5890d668b475d5d3058d1d886aafbfd83268c440
https://github.com/HazyResearch/pdftotree/blob/5890d668b475d5d3058d1d886aafbfd83268c440/pdftotree/utils/pdf/vector_utils.py#L212-L235
4,014
HazyResearch/pdftotree
pdftotree/visual/visual_utils.py
predict_heatmap
def predict_heatmap(pdf_path, page_num, model, img_dim=448, img_dir="tmp/img"): """ Return an image corresponding to the page of the pdf documents saved at pdf_path. If the image is not found in img_dir this function creates it and saves it in img_dir. :param pdf_path: path to the pdf document. ...
python
def predict_heatmap(pdf_path, page_num, model, img_dim=448, img_dir="tmp/img"): """ Return an image corresponding to the page of the pdf documents saved at pdf_path. If the image is not found in img_dir this function creates it and saves it in img_dir. :param pdf_path: path to the pdf document. ...
[ "def", "predict_heatmap", "(", "pdf_path", ",", "page_num", ",", "model", ",", "img_dim", "=", "448", ",", "img_dir", "=", "\"tmp/img\"", ")", ":", "if", "not", "os", ".", "path", ".", "isdir", "(", "img_dir", ")", ":", "print", "(", "\"\\nCreating image...
Return an image corresponding to the page of the pdf documents saved at pdf_path. If the image is not found in img_dir this function creates it and saves it in img_dir. :param pdf_path: path to the pdf document. :param page_num: page number to create image from in the pdf file. :return:
[ "Return", "an", "image", "corresponding", "to", "the", "page", "of", "the", "pdf", "documents", "saved", "at", "pdf_path", ".", "If", "the", "image", "is", "not", "found", "in", "img_dir", "this", "function", "creates", "it", "and", "saves", "it", "in", ...
5890d668b475d5d3058d1d886aafbfd83268c440
https://github.com/HazyResearch/pdftotree/blob/5890d668b475d5d3058d1d886aafbfd83268c440/pdftotree/visual/visual_utils.py#L11-L41
4,015
HazyResearch/pdftotree
pdftotree/visual/visual_utils.py
do_intersect
def do_intersect(bb1, bb2): """ Helper function that returns True if two bounding boxes overlap. """ if bb1[0] + bb1[2] < bb2[0] or bb2[0] + bb2[2] < bb1[0]: return False if bb1[1] + bb1[3] < bb2[1] or bb2[1] + bb2[3] < bb1[1]: return False return True
python
def do_intersect(bb1, bb2): """ Helper function that returns True if two bounding boxes overlap. """ if bb1[0] + bb1[2] < bb2[0] or bb2[0] + bb2[2] < bb1[0]: return False if bb1[1] + bb1[3] < bb2[1] or bb2[1] + bb2[3] < bb1[1]: return False return True
[ "def", "do_intersect", "(", "bb1", ",", "bb2", ")", ":", "if", "bb1", "[", "0", "]", "+", "bb1", "[", "2", "]", "<", "bb2", "[", "0", "]", "or", "bb2", "[", "0", "]", "+", "bb2", "[", "2", "]", "<", "bb1", "[", "0", "]", ":", "return", ...
Helper function that returns True if two bounding boxes overlap.
[ "Helper", "function", "that", "returns", "True", "if", "two", "bounding", "boxes", "overlap", "." ]
5890d668b475d5d3058d1d886aafbfd83268c440
https://github.com/HazyResearch/pdftotree/blob/5890d668b475d5d3058d1d886aafbfd83268c440/pdftotree/visual/visual_utils.py#L63-L71
4,016
HazyResearch/pdftotree
pdftotree/visual/visual_utils.py
get_bboxes
def get_bboxes( img, mask, nb_boxes=100, score_thresh=0.5, iou_thresh=0.2, prop_size=0.09, prop_scale=1.2, ): """ Uses selective search to generate candidate bounding boxes and keeps the ones that have the largest iou with the predicted mask. :param img: original image :...
python
def get_bboxes( img, mask, nb_boxes=100, score_thresh=0.5, iou_thresh=0.2, prop_size=0.09, prop_scale=1.2, ): """ Uses selective search to generate candidate bounding boxes and keeps the ones that have the largest iou with the predicted mask. :param img: original image :...
[ "def", "get_bboxes", "(", "img", ",", "mask", ",", "nb_boxes", "=", "100", ",", "score_thresh", "=", "0.5", ",", "iou_thresh", "=", "0.2", ",", "prop_size", "=", "0.09", ",", "prop_scale", "=", "1.2", ",", ")", ":", "min_size", "=", "int", "(", "img"...
Uses selective search to generate candidate bounding boxes and keeps the ones that have the largest iou with the predicted mask. :param img: original image :param mask: predicted mask :param nb_boxes: max number of candidate bounding boxes :param score_thresh: scre threshold to consider prediction ...
[ "Uses", "selective", "search", "to", "generate", "candidate", "bounding", "boxes", "and", "keeps", "the", "ones", "that", "have", "the", "largest", "iou", "with", "the", "predicted", "mask", "." ]
5890d668b475d5d3058d1d886aafbfd83268c440
https://github.com/HazyResearch/pdftotree/blob/5890d668b475d5d3058d1d886aafbfd83268c440/pdftotree/visual/visual_utils.py#L74-L141
4,017
HazyResearch/pdftotree
pdftotree/utils/pdf/pdf_utils.py
_print_dict
def _print_dict(elem_dict): """ Print a dict in a readable way """ for key, value in sorted(elem_dict.iteritems()): if isinstance(value, collections.Iterable): print(key, len(value)) else: print(key, value)
python
def _print_dict(elem_dict): """ Print a dict in a readable way """ for key, value in sorted(elem_dict.iteritems()): if isinstance(value, collections.Iterable): print(key, len(value)) else: print(key, value)
[ "def", "_print_dict", "(", "elem_dict", ")", ":", "for", "key", ",", "value", "in", "sorted", "(", "elem_dict", ".", "iteritems", "(", ")", ")", ":", "if", "isinstance", "(", "value", ",", "collections", ".", "Iterable", ")", ":", "print", "(", "key", ...
Print a dict in a readable way
[ "Print", "a", "dict", "in", "a", "readable", "way" ]
5890d668b475d5d3058d1d886aafbfd83268c440
https://github.com/HazyResearch/pdftotree/blob/5890d668b475d5d3058d1d886aafbfd83268c440/pdftotree/utils/pdf/pdf_utils.py#L221-L229
4,018
HazyResearch/pdftotree
pdftotree/utils/pdf/pdf_utils.py
_font_of_mention
def _font_of_mention(m): """ Returns the font type and size of the first alphanumeric char in the text or None if there isn't any. """ for ch in m: if isinstance(ch, LTChar) and ch.get_text().isalnum(): return (ch.fontname, _font_size_of(ch)) return (None, 0)
python
def _font_of_mention(m): """ Returns the font type and size of the first alphanumeric char in the text or None if there isn't any. """ for ch in m: if isinstance(ch, LTChar) and ch.get_text().isalnum(): return (ch.fontname, _font_size_of(ch)) return (None, 0)
[ "def", "_font_of_mention", "(", "m", ")", ":", "for", "ch", "in", "m", ":", "if", "isinstance", "(", "ch", ",", "LTChar", ")", "and", "ch", ".", "get_text", "(", ")", ".", "isalnum", "(", ")", ":", "return", "(", "ch", ".", "fontname", ",", "_fon...
Returns the font type and size of the first alphanumeric char in the text or None if there isn't any.
[ "Returns", "the", "font", "type", "and", "size", "of", "the", "first", "alphanumeric", "char", "in", "the", "text", "or", "None", "if", "there", "isn", "t", "any", "." ]
5890d668b475d5d3058d1d886aafbfd83268c440
https://github.com/HazyResearch/pdftotree/blob/5890d668b475d5d3058d1d886aafbfd83268c440/pdftotree/utils/pdf/pdf_utils.py#L238-L246
4,019
HazyResearch/pdftotree
pdftotree/utils/pdf/pdf_utils.py
_allowed_char
def _allowed_char(c): """ Returns whether the given unicode char is allowed in output """ c = ord(c) if c < 0: return False if c < 128: return _ascii_allowed[c] # Genereally allow unicodes, TODO: check for unicode control characters # characters return True
python
def _allowed_char(c): """ Returns whether the given unicode char is allowed in output """ c = ord(c) if c < 0: return False if c < 128: return _ascii_allowed[c] # Genereally allow unicodes, TODO: check for unicode control characters # characters return True
[ "def", "_allowed_char", "(", "c", ")", ":", "c", "=", "ord", "(", "c", ")", "if", "c", "<", "0", ":", "return", "False", "if", "c", "<", "128", ":", "return", "_ascii_allowed", "[", "c", "]", "# Genereally allow unicodes, TODO: check for unicode control char...
Returns whether the given unicode char is allowed in output
[ "Returns", "whether", "the", "given", "unicode", "char", "is", "allowed", "in", "output" ]
5890d668b475d5d3058d1d886aafbfd83268c440
https://github.com/HazyResearch/pdftotree/blob/5890d668b475d5d3058d1d886aafbfd83268c440/pdftotree/utils/pdf/pdf_utils.py#L258-L269
4,020
HazyResearch/pdftotree
pdftotree/utils/pdf/pdf_utils.py
keep_allowed_chars
def keep_allowed_chars(text): """ Cleans the text for output """ # print ','.join(str(ord(c)) for c in text) return "".join(" " if c == "\n" else c for c in text.strip() if _allowed_char(c))
python
def keep_allowed_chars(text): """ Cleans the text for output """ # print ','.join(str(ord(c)) for c in text) return "".join(" " if c == "\n" else c for c in text.strip() if _allowed_char(c))
[ "def", "keep_allowed_chars", "(", "text", ")", ":", "# print ','.join(str(ord(c)) for c in text)", "return", "\"\"", ".", "join", "(", "\" \"", "if", "c", "==", "\"\\n\"", "else", "c", "for", "c", "in", "text", ".", "strip", "(", ")", "if", "_allowed_char"...
Cleans the text for output
[ "Cleans", "the", "text", "for", "output" ]
5890d668b475d5d3058d1d886aafbfd83268c440
https://github.com/HazyResearch/pdftotree/blob/5890d668b475d5d3058d1d886aafbfd83268c440/pdftotree/utils/pdf/pdf_utils.py#L272-L277
4,021
HazyResearch/pdftotree
pdftotree/utils/pdf/pdf_utils.py
CustomPDFPageAggregator.paint_path
def paint_path(self, gstate, stroke, fill, evenodd, path): """ Converting long paths to small segments each time we m=Move or h=ClosePath for polygon """ shape = "".join(x[0] for x in path) prev_split = 0 for i in range(len(shape)): if shape[i] == "m" ...
python
def paint_path(self, gstate, stroke, fill, evenodd, path): """ Converting long paths to small segments each time we m=Move or h=ClosePath for polygon """ shape = "".join(x[0] for x in path) prev_split = 0 for i in range(len(shape)): if shape[i] == "m" ...
[ "def", "paint_path", "(", "self", ",", "gstate", ",", "stroke", ",", "fill", ",", "evenodd", ",", "path", ")", ":", "shape", "=", "\"\"", ".", "join", "(", "x", "[", "0", "]", "for", "x", "in", "path", ")", "prev_split", "=", "0", "for", "i", "...
Converting long paths to small segments each time we m=Move or h=ClosePath for polygon
[ "Converting", "long", "paths", "to", "small", "segments", "each", "time", "we", "m", "=", "Move", "or", "h", "=", "ClosePath", "for", "polygon" ]
5890d668b475d5d3058d1d886aafbfd83268c440
https://github.com/HazyResearch/pdftotree/blob/5890d668b475d5d3058d1d886aafbfd83268c440/pdftotree/utils/pdf/pdf_utils.py#L53-L74
4,022
HazyResearch/pdftotree
pdftotree/utils/pdf/pdf_utils.py
CustomPDFPageAggregator.paint_single_path
def paint_single_path(self, gstate, stroke, fill, evenodd, path): """ Converting a single path draw command into lines and curves objects """ if len(path) < 2: return shape = "".join(x[0] for x in path) pts = [] for p in path: for i in ran...
python
def paint_single_path(self, gstate, stroke, fill, evenodd, path): """ Converting a single path draw command into lines and curves objects """ if len(path) < 2: return shape = "".join(x[0] for x in path) pts = [] for p in path: for i in ran...
[ "def", "paint_single_path", "(", "self", ",", "gstate", ",", "stroke", ",", "fill", ",", "evenodd", ",", "path", ")", ":", "if", "len", "(", "path", ")", "<", "2", ":", "return", "shape", "=", "\"\"", ".", "join", "(", "x", "[", "0", "]", "for", ...
Converting a single path draw command into lines and curves objects
[ "Converting", "a", "single", "path", "draw", "command", "into", "lines", "and", "curves", "objects" ]
5890d668b475d5d3058d1d886aafbfd83268c440
https://github.com/HazyResearch/pdftotree/blob/5890d668b475d5d3058d1d886aafbfd83268c440/pdftotree/utils/pdf/pdf_utils.py#L76-L107
4,023
HazyResearch/pdftotree
pdftotree/utils/pdf/layout_utils.py
traverse_layout
def traverse_layout(root, callback): """ Tree walker and invokes the callback as it traverse pdf object tree """ callback(root) if isinstance(root, collections.Iterable): for child in root: traverse_layout(child, callback)
python
def traverse_layout(root, callback): """ Tree walker and invokes the callback as it traverse pdf object tree """ callback(root) if isinstance(root, collections.Iterable): for child in root: traverse_layout(child, callback)
[ "def", "traverse_layout", "(", "root", ",", "callback", ")", ":", "callback", "(", "root", ")", "if", "isinstance", "(", "root", ",", "collections", ".", "Iterable", ")", ":", "for", "child", "in", "root", ":", "traverse_layout", "(", "child", ",", "call...
Tree walker and invokes the callback as it traverse pdf object tree
[ "Tree", "walker", "and", "invokes", "the", "callback", "as", "it", "traverse", "pdf", "object", "tree" ]
5890d668b475d5d3058d1d886aafbfd83268c440
https://github.com/HazyResearch/pdftotree/blob/5890d668b475d5d3058d1d886aafbfd83268c440/pdftotree/utils/pdf/layout_utils.py#L17-L25
4,024
HazyResearch/pdftotree
pdftotree/utils/pdf/layout_utils.py
get_near_items
def get_near_items(tree, tree_key): """ Check both possible neighbors for key in a binary tree """ try: yield tree.floor_item(tree_key) except KeyError: pass try: yield tree.ceiling_item(tree_key) except KeyError: pass
python
def get_near_items(tree, tree_key): """ Check both possible neighbors for key in a binary tree """ try: yield tree.floor_item(tree_key) except KeyError: pass try: yield tree.ceiling_item(tree_key) except KeyError: pass
[ "def", "get_near_items", "(", "tree", ",", "tree_key", ")", ":", "try", ":", "yield", "tree", ".", "floor_item", "(", "tree_key", ")", "except", "KeyError", ":", "pass", "try", ":", "yield", "tree", ".", "ceiling_item", "(", "tree_key", ")", "except", "K...
Check both possible neighbors for key in a binary tree
[ "Check", "both", "possible", "neighbors", "for", "key", "in", "a", "binary", "tree" ]
5890d668b475d5d3058d1d886aafbfd83268c440
https://github.com/HazyResearch/pdftotree/blob/5890d668b475d5d3058d1d886aafbfd83268c440/pdftotree/utils/pdf/layout_utils.py#L28-L40
4,025
HazyResearch/pdftotree
pdftotree/utils/pdf/layout_utils.py
align_add
def align_add(tree, key, item, align_thres=2.0): """ Adding the item object to a binary tree with the given key while allow for small key differences close_enough_func that checks if two keys are within threshold """ for near_key, near_list in get_near_items(tree, key): if abs(key - ...
python
def align_add(tree, key, item, align_thres=2.0): """ Adding the item object to a binary tree with the given key while allow for small key differences close_enough_func that checks if two keys are within threshold """ for near_key, near_list in get_near_items(tree, key): if abs(key - ...
[ "def", "align_add", "(", "tree", ",", "key", ",", "item", ",", "align_thres", "=", "2.0", ")", ":", "for", "near_key", ",", "near_list", "in", "get_near_items", "(", "tree", ",", "key", ")", ":", "if", "abs", "(", "key", "-", "near_key", ")", "<", ...
Adding the item object to a binary tree with the given key while allow for small key differences close_enough_func that checks if two keys are within threshold
[ "Adding", "the", "item", "object", "to", "a", "binary", "tree", "with", "the", "given", "key", "while", "allow", "for", "small", "key", "differences", "close_enough_func", "that", "checks", "if", "two", "keys", "are", "within", "threshold" ]
5890d668b475d5d3058d1d886aafbfd83268c440
https://github.com/HazyResearch/pdftotree/blob/5890d668b475d5d3058d1d886aafbfd83268c440/pdftotree/utils/pdf/layout_utils.py#L43-L55
4,026
HazyResearch/pdftotree
pdftotree/utils/pdf/layout_utils.py
collect_table_content
def collect_table_content(table_bboxes, elems): """ Returns a list of elements that are contained inside the corresponding supplied bbox. """ # list of table content chars table_contents = [[] for _ in range(len(table_bboxes))] prev_content = None prev_bbox = None for cid, c in enume...
python
def collect_table_content(table_bboxes, elems): """ Returns a list of elements that are contained inside the corresponding supplied bbox. """ # list of table content chars table_contents = [[] for _ in range(len(table_bboxes))] prev_content = None prev_bbox = None for cid, c in enume...
[ "def", "collect_table_content", "(", "table_bboxes", ",", "elems", ")", ":", "# list of table content chars", "table_contents", "=", "[", "[", "]", "for", "_", "in", "range", "(", "len", "(", "table_bboxes", ")", ")", "]", "prev_content", "=", "None", "prev_bb...
Returns a list of elements that are contained inside the corresponding supplied bbox.
[ "Returns", "a", "list", "of", "elements", "that", "are", "contained", "inside", "the", "corresponding", "supplied", "bbox", "." ]
5890d668b475d5d3058d1d886aafbfd83268c440
https://github.com/HazyResearch/pdftotree/blob/5890d668b475d5d3058d1d886aafbfd83268c440/pdftotree/utils/pdf/layout_utils.py#L120-L150
4,027
HazyResearch/pdftotree
pdftotree/utils/pdf/layout_utils.py
project_onto
def project_onto(objs, axis, min_gap_size=4.0): """ Projects object bboxes onto the axis and return the unioned intervals and groups of objects in intervals. """ if axis == "x": axis = 0 if axis == "y": axis = 1 axis_end = axis + 2 if axis == 0: # if projecting onto X ax...
python
def project_onto(objs, axis, min_gap_size=4.0): """ Projects object bboxes onto the axis and return the unioned intervals and groups of objects in intervals. """ if axis == "x": axis = 0 if axis == "y": axis = 1 axis_end = axis + 2 if axis == 0: # if projecting onto X ax...
[ "def", "project_onto", "(", "objs", ",", "axis", ",", "min_gap_size", "=", "4.0", ")", ":", "if", "axis", "==", "\"x\"", ":", "axis", "=", "0", "if", "axis", "==", "\"y\"", ":", "axis", "=", "1", "axis_end", "=", "axis", "+", "2", "if", "axis", "...
Projects object bboxes onto the axis and return the unioned intervals and groups of objects in intervals.
[ "Projects", "object", "bboxes", "onto", "the", "axis", "and", "return", "the", "unioned", "intervals", "and", "groups", "of", "objects", "in", "intervals", "." ]
5890d668b475d5d3058d1d886aafbfd83268c440
https://github.com/HazyResearch/pdftotree/blob/5890d668b475d5d3058d1d886aafbfd83268c440/pdftotree/utils/pdf/layout_utils.py#L168-L214
4,028
HazyResearch/pdftotree
pdftotree/utils/pdf/render.py
Renderer.draw_rect
def draw_rect(self, bbox, cell_val): """ Fills the bbox with the content values Float bbox values are normalized to have non-zero area """ new_x0 = int(bbox[x0]) new_y0 = int(bbox[y0]) new_x1 = max(new_x0 + 1, int(bbox[x1])) new_y1 = max(new_y0 + 1, int(bb...
python
def draw_rect(self, bbox, cell_val): """ Fills the bbox with the content values Float bbox values are normalized to have non-zero area """ new_x0 = int(bbox[x0]) new_y0 = int(bbox[y0]) new_x1 = max(new_x0 + 1, int(bbox[x1])) new_y1 = max(new_y0 + 1, int(bb...
[ "def", "draw_rect", "(", "self", ",", "bbox", ",", "cell_val", ")", ":", "new_x0", "=", "int", "(", "bbox", "[", "x0", "]", ")", "new_y0", "=", "int", "(", "bbox", "[", "y0", "]", ")", "new_x1", "=", "max", "(", "new_x0", "+", "1", ",", "int", ...
Fills the bbox with the content values Float bbox values are normalized to have non-zero area
[ "Fills", "the", "bbox", "with", "the", "content", "values", "Float", "bbox", "values", "are", "normalized", "to", "have", "non", "-", "zero", "area" ]
5890d668b475d5d3058d1d886aafbfd83268c440
https://github.com/HazyResearch/pdftotree/blob/5890d668b475d5d3058d1d886aafbfd83268c440/pdftotree/utils/pdf/render.py#L57-L67
4,029
HazyResearch/pdftotree
pdftotree/utils/pdf/pdf_parsers.py
parse_layout
def parse_layout(elems, font_stat, combine=False): """ Parses pdf texts into a hypergraph grouped into rows and columns and then output """ boxes_segments = elems.segments boxes_curves = elems.curves boxes_figures = elems.figures page_width = elems.layout.width # page_height = elems...
python
def parse_layout(elems, font_stat, combine=False): """ Parses pdf texts into a hypergraph grouped into rows and columns and then output """ boxes_segments = elems.segments boxes_curves = elems.curves boxes_figures = elems.figures page_width = elems.layout.width # page_height = elems...
[ "def", "parse_layout", "(", "elems", ",", "font_stat", ",", "combine", "=", "False", ")", ":", "boxes_segments", "=", "elems", ".", "segments", "boxes_curves", "=", "elems", ".", "curves", "boxes_figures", "=", "elems", ".", "figures", "page_width", "=", "el...
Parses pdf texts into a hypergraph grouped into rows and columns and then output
[ "Parses", "pdf", "texts", "into", "a", "hypergraph", "grouped", "into", "rows", "and", "columns", "and", "then", "output" ]
5890d668b475d5d3058d1d886aafbfd83268c440
https://github.com/HazyResearch/pdftotree/blob/5890d668b475d5d3058d1d886aafbfd83268c440/pdftotree/utils/pdf/pdf_parsers.py#L23-L63
4,030
HazyResearch/pdftotree
pdftotree/utils/pdf/pdf_parsers.py
merge_nodes
def merge_nodes(nodes, plane, page_stat, merge_indices): """ Merges overlapping nodes """ # Merge inner boxes to the best outer box # nodes.sort(key=Node.area) to_be_removed = set() for inner_idx in range(len(nodes)): inner = nodes[inner_idx] outers = [] outers_indice...
python
def merge_nodes(nodes, plane, page_stat, merge_indices): """ Merges overlapping nodes """ # Merge inner boxes to the best outer box # nodes.sort(key=Node.area) to_be_removed = set() for inner_idx in range(len(nodes)): inner = nodes[inner_idx] outers = [] outers_indice...
[ "def", "merge_nodes", "(", "nodes", ",", "plane", ",", "page_stat", ",", "merge_indices", ")", ":", "# Merge inner boxes to the best outer box", "# nodes.sort(key=Node.area)", "to_be_removed", "=", "set", "(", ")", "for", "inner_idx", "in", "range", "(", "len", "(",...
Merges overlapping nodes
[ "Merges", "overlapping", "nodes" ]
5890d668b475d5d3058d1d886aafbfd83268c440
https://github.com/HazyResearch/pdftotree/blob/5890d668b475d5d3058d1d886aafbfd83268c440/pdftotree/utils/pdf/pdf_parsers.py#L1266-L1296
4,031
HazyResearch/pdftotree
pdftotree/utils/pdf/node.py
_get_cols
def _get_cols(row_content): """ Counting the number columns based on the content of this row """ cols = [] subcell_col = [] prev_bar = None for _coord, item in row_content: if isinstance(item, LTTextLine): subcell_col.append(item) else: # bar, add column content ...
python
def _get_cols(row_content): """ Counting the number columns based on the content of this row """ cols = [] subcell_col = [] prev_bar = None for _coord, item in row_content: if isinstance(item, LTTextLine): subcell_col.append(item) else: # bar, add column content ...
[ "def", "_get_cols", "(", "row_content", ")", ":", "cols", "=", "[", "]", "subcell_col", "=", "[", "]", "prev_bar", "=", "None", "for", "_coord", ",", "item", "in", "row_content", ":", "if", "isinstance", "(", "item", ",", "LTTextLine", ")", ":", "subce...
Counting the number columns based on the content of this row
[ "Counting", "the", "number", "columns", "based", "on", "the", "content", "of", "this", "row" ]
5890d668b475d5d3058d1d886aafbfd83268c440
https://github.com/HazyResearch/pdftotree/blob/5890d668b475d5d3058d1d886aafbfd83268c440/pdftotree/utils/pdf/node.py#L187-L206
4,032
HazyResearch/pdftotree
pdftotree/utils/pdf/node.py
_one_contains_other
def _one_contains_other(s1, s2): """ Whether one set contains the other """ return min(len(s1), len(s2)) == len(s1 & s2)
python
def _one_contains_other(s1, s2): """ Whether one set contains the other """ return min(len(s1), len(s2)) == len(s1 & s2)
[ "def", "_one_contains_other", "(", "s1", ",", "s2", ")", ":", "return", "min", "(", "len", "(", "s1", ")", ",", "len", "(", "s2", ")", ")", "==", "len", "(", "s1", "&", "s2", ")" ]
Whether one set contains the other
[ "Whether", "one", "set", "contains", "the", "other" ]
5890d668b475d5d3058d1d886aafbfd83268c440
https://github.com/HazyResearch/pdftotree/blob/5890d668b475d5d3058d1d886aafbfd83268c440/pdftotree/utils/pdf/node.py#L241-L245
4,033
HazyResearch/pdftotree
pdftotree/utils/pdf/node.py
Node.is_table
def is_table(self): """ Count the node's number of mention al ignment in both axes to determine if the node is a table. """ if self.type_counts["text"] < 6 or "figure" in self.type_counts: return False for e in self.elems: # Characters written as c...
python
def is_table(self): """ Count the node's number of mention al ignment in both axes to determine if the node is a table. """ if self.type_counts["text"] < 6 or "figure" in self.type_counts: return False for e in self.elems: # Characters written as c...
[ "def", "is_table", "(", "self", ")", ":", "if", "self", ".", "type_counts", "[", "\"text\"", "]", "<", "6", "or", "\"figure\"", "in", "self", ".", "type_counts", ":", "return", "False", "for", "e", "in", "self", ".", "elems", ":", "# Characters written a...
Count the node's number of mention al ignment in both axes to determine if the node is a table.
[ "Count", "the", "node", "s", "number", "of", "mention", "al", "ignment", "in", "both", "axes", "to", "determine", "if", "the", "node", "is", "a", "table", "." ]
5890d668b475d5d3058d1d886aafbfd83268c440
https://github.com/HazyResearch/pdftotree/blob/5890d668b475d5d3058d1d886aafbfd83268c440/pdftotree/utils/pdf/node.py#L73-L115
4,034
HazyResearch/pdftotree
pdftotree/utils/pdf/node.py
Node.get_grid
def get_grid(self): """ Standardize the layout of the table into grids """ mentions, lines = _split_text_n_lines(self.elems) # Sort mentions in reading order where y values are snapped to half # height-sized grid mentions.sort(key=lambda m: (m.yc_grid, m.xc)) ...
python
def get_grid(self): """ Standardize the layout of the table into grids """ mentions, lines = _split_text_n_lines(self.elems) # Sort mentions in reading order where y values are snapped to half # height-sized grid mentions.sort(key=lambda m: (m.yc_grid, m.xc)) ...
[ "def", "get_grid", "(", "self", ")", ":", "mentions", ",", "lines", "=", "_split_text_n_lines", "(", "self", ".", "elems", ")", "# Sort mentions in reading order where y values are snapped to half", "# height-sized grid", "mentions", ".", "sort", "(", "key", "=", "lam...
Standardize the layout of the table into grids
[ "Standardize", "the", "layout", "of", "the", "table", "into", "grids" ]
5890d668b475d5d3058d1d886aafbfd83268c440
https://github.com/HazyResearch/pdftotree/blob/5890d668b475d5d3058d1d886aafbfd83268c440/pdftotree/utils/pdf/node.py#L118-L128
4,035
HazyResearch/pdftotree
pdftotree/utils/img_utils.py
lazy_load_font
def lazy_load_font(font_size=default_font_size): """ Lazy loading font according to system platform """ if font_size not in _font_cache: if _platform.startswith("darwin"): font_path = "/Library/Fonts/Arial.ttf" elif _platform.startswith("linux"): font_path = "/usr...
python
def lazy_load_font(font_size=default_font_size): """ Lazy loading font according to system platform """ if font_size not in _font_cache: if _platform.startswith("darwin"): font_path = "/Library/Fonts/Arial.ttf" elif _platform.startswith("linux"): font_path = "/usr...
[ "def", "lazy_load_font", "(", "font_size", "=", "default_font_size", ")", ":", "if", "font_size", "not", "in", "_font_cache", ":", "if", "_platform", ".", "startswith", "(", "\"darwin\"", ")", ":", "font_path", "=", "\"/Library/Fonts/Arial.ttf\"", "elif", "_platfo...
Lazy loading font according to system platform
[ "Lazy", "loading", "font", "according", "to", "system", "platform" ]
5890d668b475d5d3058d1d886aafbfd83268c440
https://github.com/HazyResearch/pdftotree/blob/5890d668b475d5d3058d1d886aafbfd83268c440/pdftotree/utils/img_utils.py#L24-L36
4,036
HazyResearch/pdftotree
pdftotree/utils/img_utils.py
render_debug_img
def render_debug_img( file_name, page_num, elems, nodes=[], scaler=1, print_segments=False, print_curves=True, print_table_bbox=True, print_text_as_rect=True, ): """ Shows an image rendering of the pdf page along with debugging info printed """ # For debugging sho...
python
def render_debug_img( file_name, page_num, elems, nodes=[], scaler=1, print_segments=False, print_curves=True, print_table_bbox=True, print_text_as_rect=True, ): """ Shows an image rendering of the pdf page along with debugging info printed """ # For debugging sho...
[ "def", "render_debug_img", "(", "file_name", ",", "page_num", ",", "elems", ",", "nodes", "=", "[", "]", ",", "scaler", "=", "1", ",", "print_segments", "=", "False", ",", "print_curves", "=", "True", ",", "print_table_bbox", "=", "True", ",", "print_text_...
Shows an image rendering of the pdf page along with debugging info printed
[ "Shows", "an", "image", "rendering", "of", "the", "pdf", "page", "along", "with", "debugging", "info", "printed" ]
5890d668b475d5d3058d1d886aafbfd83268c440
https://github.com/HazyResearch/pdftotree/blob/5890d668b475d5d3058d1d886aafbfd83268c440/pdftotree/utils/img_utils.py#L93-L160
4,037
albahnsen/CostSensitiveClassification
costcla/models/bagging.py
_partition_estimators
def _partition_estimators(n_estimators, n_jobs): """Private function used to partition estimators between jobs.""" # Compute the number of jobs if n_jobs == -1: n_jobs = min(cpu_count(), n_estimators) else: n_jobs = min(n_jobs, n_estimators) # Partition estimators between jobs ...
python
def _partition_estimators(n_estimators, n_jobs): """Private function used to partition estimators between jobs.""" # Compute the number of jobs if n_jobs == -1: n_jobs = min(cpu_count(), n_estimators) else: n_jobs = min(n_jobs, n_estimators) # Partition estimators between jobs ...
[ "def", "_partition_estimators", "(", "n_estimators", ",", "n_jobs", ")", ":", "# Compute the number of jobs", "if", "n_jobs", "==", "-", "1", ":", "n_jobs", "=", "min", "(", "cpu_count", "(", ")", ",", "n_estimators", ")", "else", ":", "n_jobs", "=", "min", ...
Private function used to partition estimators between jobs.
[ "Private", "function", "used", "to", "partition", "estimators", "between", "jobs", "." ]
75778ae32c70671c0cdde6c4651277b6a8b58871
https://github.com/albahnsen/CostSensitiveClassification/blob/75778ae32c70671c0cdde6c4651277b6a8b58871/costcla/models/bagging.py#L36-L51
4,038
albahnsen/CostSensitiveClassification
costcla/models/bagging.py
_parallel_build_estimators
def _parallel_build_estimators(n_estimators, ensemble, X, y, cost_mat, seeds, verbose): """Private function used to build a batch of estimators within a job.""" # Retrieve settings n_samples, n_features = X.shape max_samples = ensemble.max_samples max_features = ensemb...
python
def _parallel_build_estimators(n_estimators, ensemble, X, y, cost_mat, seeds, verbose): """Private function used to build a batch of estimators within a job.""" # Retrieve settings n_samples, n_features = X.shape max_samples = ensemble.max_samples max_features = ensemb...
[ "def", "_parallel_build_estimators", "(", "n_estimators", ",", "ensemble", ",", "X", ",", "y", ",", "cost_mat", ",", "seeds", ",", "verbose", ")", ":", "# Retrieve settings", "n_samples", ",", "n_features", "=", "X", ".", "shape", "max_samples", "=", "ensemble...
Private function used to build a batch of estimators within a job.
[ "Private", "function", "used", "to", "build", "a", "batch", "of", "estimators", "within", "a", "job", "." ]
75778ae32c70671c0cdde6c4651277b6a8b58871
https://github.com/albahnsen/CostSensitiveClassification/blob/75778ae32c70671c0cdde6c4651277b6a8b58871/costcla/models/bagging.py#L54-L116
4,039
albahnsen/CostSensitiveClassification
costcla/models/bagging.py
_parallel_predict
def _parallel_predict(estimators, estimators_features, X, n_classes, combination, estimators_weight): """Private function used to compute predictions within a job.""" n_samples = X.shape[0] pred = np.zeros((n_samples, n_classes)) n_estimators = len(estimators) for estimator, features, weight in zip...
python
def _parallel_predict(estimators, estimators_features, X, n_classes, combination, estimators_weight): """Private function used to compute predictions within a job.""" n_samples = X.shape[0] pred = np.zeros((n_samples, n_classes)) n_estimators = len(estimators) for estimator, features, weight in zip...
[ "def", "_parallel_predict", "(", "estimators", ",", "estimators_features", ",", "X", ",", "n_classes", ",", "combination", ",", "estimators_weight", ")", ":", "n_samples", "=", "X", ".", "shape", "[", "0", "]", "pred", "=", "np", ".", "zeros", "(", "(", ...
Private function used to compute predictions within a job.
[ "Private", "function", "used", "to", "compute", "predictions", "within", "a", "job", "." ]
75778ae32c70671c0cdde6c4651277b6a8b58871
https://github.com/albahnsen/CostSensitiveClassification/blob/75778ae32c70671c0cdde6c4651277b6a8b58871/costcla/models/bagging.py#L134-L150
4,040
albahnsen/CostSensitiveClassification
costcla/models/bagging.py
_create_stacking_set
def _create_stacking_set(estimators, estimators_features, estimators_weight, X, combination): """Private function used to create the stacking training set.""" n_samples = X.shape[0] valid_estimators = np.nonzero(estimators_weight)[0] n_valid_estimators = valid_estimators.shape[0] X_stacking = np.ze...
python
def _create_stacking_set(estimators, estimators_features, estimators_weight, X, combination): """Private function used to create the stacking training set.""" n_samples = X.shape[0] valid_estimators = np.nonzero(estimators_weight)[0] n_valid_estimators = valid_estimators.shape[0] X_stacking = np.ze...
[ "def", "_create_stacking_set", "(", "estimators", ",", "estimators_features", ",", "estimators_weight", ",", "X", ",", "combination", ")", ":", "n_samples", "=", "X", ".", "shape", "[", "0", "]", "valid_estimators", "=", "np", ".", "nonzero", "(", "estimators_...
Private function used to create the stacking training set.
[ "Private", "function", "used", "to", "create", "the", "stacking", "training", "set", "." ]
75778ae32c70671c0cdde6c4651277b6a8b58871
https://github.com/albahnsen/CostSensitiveClassification/blob/75778ae32c70671c0cdde6c4651277b6a8b58871/costcla/models/bagging.py#L153-L167
4,041
albahnsen/CostSensitiveClassification
costcla/models/bagging.py
BaseBagging._fit_bmr_model
def _fit_bmr_model(self, X, y): """Private function used to fit the BayesMinimumRisk model.""" self.f_bmr = BayesMinimumRiskClassifier() X_bmr = self.predict_proba(X) self.f_bmr.fit(y, X_bmr) return self
python
def _fit_bmr_model(self, X, y): """Private function used to fit the BayesMinimumRisk model.""" self.f_bmr = BayesMinimumRiskClassifier() X_bmr = self.predict_proba(X) self.f_bmr.fit(y, X_bmr) return self
[ "def", "_fit_bmr_model", "(", "self", ",", "X", ",", "y", ")", ":", "self", ".", "f_bmr", "=", "BayesMinimumRiskClassifier", "(", ")", "X_bmr", "=", "self", ".", "predict_proba", "(", "X", ")", "self", ".", "f_bmr", ".", "fit", "(", "y", ",", "X_bmr"...
Private function used to fit the BayesMinimumRisk model.
[ "Private", "function", "used", "to", "fit", "the", "BayesMinimumRisk", "model", "." ]
75778ae32c70671c0cdde6c4651277b6a8b58871
https://github.com/albahnsen/CostSensitiveClassification/blob/75778ae32c70671c0cdde6c4651277b6a8b58871/costcla/models/bagging.py#L295-L300
4,042
albahnsen/CostSensitiveClassification
costcla/models/bagging.py
BaseBagging._fit_stacking_model
def _fit_stacking_model(self,X, y, cost_mat, max_iter=100): """Private function used to fit the stacking model.""" self.f_staking = CostSensitiveLogisticRegression(verbose=self.verbose, max_iter=max_iter) X_stacking = _create_stacking_set(self.estimators_, self.estimators_features_, ...
python
def _fit_stacking_model(self,X, y, cost_mat, max_iter=100): """Private function used to fit the stacking model.""" self.f_staking = CostSensitiveLogisticRegression(verbose=self.verbose, max_iter=max_iter) X_stacking = _create_stacking_set(self.estimators_, self.estimators_features_, ...
[ "def", "_fit_stacking_model", "(", "self", ",", "X", ",", "y", ",", "cost_mat", ",", "max_iter", "=", "100", ")", ":", "self", ".", "f_staking", "=", "CostSensitiveLogisticRegression", "(", "verbose", "=", "self", ".", "verbose", ",", "max_iter", "=", "max...
Private function used to fit the stacking model.
[ "Private", "function", "used", "to", "fit", "the", "stacking", "model", "." ]
75778ae32c70671c0cdde6c4651277b6a8b58871
https://github.com/albahnsen/CostSensitiveClassification/blob/75778ae32c70671c0cdde6c4651277b6a8b58871/costcla/models/bagging.py#L302-L308
4,043
albahnsen/CostSensitiveClassification
costcla/models/bagging.py
BaseBagging._evaluate_oob_savings
def _evaluate_oob_savings(self, X, y, cost_mat): """Private function used to calculate the OOB Savings of each estimator.""" estimators_weight = [] for estimator, samples, features in zip(self.estimators_, self.estimators_samples_, self.estimators_...
python
def _evaluate_oob_savings(self, X, y, cost_mat): """Private function used to calculate the OOB Savings of each estimator.""" estimators_weight = [] for estimator, samples, features in zip(self.estimators_, self.estimators_samples_, self.estimators_...
[ "def", "_evaluate_oob_savings", "(", "self", ",", "X", ",", "y", ",", "cost_mat", ")", ":", "estimators_weight", "=", "[", "]", "for", "estimator", ",", "samples", ",", "features", "in", "zip", "(", "self", ".", "estimators_", ",", "self", ".", "estimato...
Private function used to calculate the OOB Savings of each estimator.
[ "Private", "function", "used", "to", "calculate", "the", "OOB", "Savings", "of", "each", "estimator", "." ]
75778ae32c70671c0cdde6c4651277b6a8b58871
https://github.com/albahnsen/CostSensitiveClassification/blob/75778ae32c70671c0cdde6c4651277b6a8b58871/costcla/models/bagging.py#L311-L334
4,044
albahnsen/CostSensitiveClassification
costcla/models/bagging.py
BaggingClassifier.predict
def predict(self, X, cost_mat=None): """Predict class for X. The predicted class of an input sample is computed as the class with the highest mean predicted probability. If base estimators do not implement a ``predict_proba`` method, then it resorts to voting. Parameters ...
python
def predict(self, X, cost_mat=None): """Predict class for X. The predicted class of an input sample is computed as the class with the highest mean predicted probability. If base estimators do not implement a ``predict_proba`` method, then it resorts to voting. Parameters ...
[ "def", "predict", "(", "self", ",", "X", ",", "cost_mat", "=", "None", ")", ":", "# Check data", "# X = check_array(X, accept_sparse=['csr', 'csc', 'coo']) # Dont in version 0.15", "if", "self", ".", "n_features_", "!=", "X", ".", "shape", "[", "1", "]", ":", "ra...
Predict class for X. The predicted class of an input sample is computed as the class with the highest mean predicted probability. If base estimators do not implement a ``predict_proba`` method, then it resorts to voting. Parameters ---------- X : {array-like, sparse mat...
[ "Predict", "class", "for", "X", "." ]
75778ae32c70671c0cdde6c4651277b6a8b58871
https://github.com/albahnsen/CostSensitiveClassification/blob/75778ae32c70671c0cdde6c4651277b6a8b58871/costcla/models/bagging.py#L491-L554
4,045
albahnsen/CostSensitiveClassification
costcla/models/bagging.py
BaggingClassifier.predict_proba
def predict_proba(self, X): """Predict class probabilities for X. The predicted class probabilities of an input sample is computed as the mean predicted class probabilities of the base estimators in the ensemble. If base estimators do not implement a ``predict_proba`` method, th...
python
def predict_proba(self, X): """Predict class probabilities for X. The predicted class probabilities of an input sample is computed as the mean predicted class probabilities of the base estimators in the ensemble. If base estimators do not implement a ``predict_proba`` method, th...
[ "def", "predict_proba", "(", "self", ",", "X", ")", ":", "# Check data", "# X = check_array(X, accept_sparse=['csr', 'csc', 'coo']) # Dont in version 0.15", "if", "self", ".", "n_features_", "!=", "X", ".", "shape", "[", "1", "]", ":", "raise", "ValueError", "(", "...
Predict class probabilities for X. The predicted class probabilities of an input sample is computed as the mean predicted class probabilities of the base estimators in the ensemble. If base estimators do not implement a ``predict_proba`` method, then it resorts to voting and the predict...
[ "Predict", "class", "probabilities", "for", "X", "." ]
75778ae32c70671c0cdde6c4651277b6a8b58871
https://github.com/albahnsen/CostSensitiveClassification/blob/75778ae32c70671c0cdde6c4651277b6a8b58871/costcla/models/bagging.py#L556-L610
4,046
albahnsen/CostSensitiveClassification
costcla/sampling/cost_sampling.py
cost_sampling
def cost_sampling(X, y, cost_mat, method='RejectionSampling', oversampling_norm=0.1, max_wc=97.5): """Cost-proportionate sampling. Parameters ---------- X : array-like of shape = [n_samples, n_features] The input samples. y : array-like of shape = [n_samples] Ground...
python
def cost_sampling(X, y, cost_mat, method='RejectionSampling', oversampling_norm=0.1, max_wc=97.5): """Cost-proportionate sampling. Parameters ---------- X : array-like of shape = [n_samples, n_features] The input samples. y : array-like of shape = [n_samples] Ground...
[ "def", "cost_sampling", "(", "X", ",", "y", ",", "cost_mat", ",", "method", "=", "'RejectionSampling'", ",", "oversampling_norm", "=", "0.1", ",", "max_wc", "=", "97.5", ")", ":", "#TODO: Check consistency of input", "# The methods are construct only for the misclassifi...
Cost-proportionate sampling. Parameters ---------- X : array-like of shape = [n_samples, n_features] The input samples. y : array-like of shape = [n_samples] Ground truth (correct) labels. cost_mat : array-like of shape = [n_samples, 4] Cost matrix ...
[ "Cost", "-", "proportionate", "sampling", "." ]
75778ae32c70671c0cdde6c4651277b6a8b58871
https://github.com/albahnsen/CostSensitiveClassification/blob/75778ae32c70671c0cdde6c4651277b6a8b58871/costcla/sampling/cost_sampling.py#L11-L123
4,047
albahnsen/CostSensitiveClassification
costcla/datasets/base.py
_creditscoring_costmat
def _creditscoring_costmat(income, debt, pi_1, cost_mat_parameters): """ Private function to calculate the cost matrix of credit scoring models. Parameters ---------- income : array of shape = [n_samples] Monthly income of each example debt : array of shape = [n_samples] Debt ratio...
python
def _creditscoring_costmat(income, debt, pi_1, cost_mat_parameters): """ Private function to calculate the cost matrix of credit scoring models. Parameters ---------- income : array of shape = [n_samples] Monthly income of each example debt : array of shape = [n_samples] Debt ratio...
[ "def", "_creditscoring_costmat", "(", "income", ",", "debt", ",", "pi_1", ",", "cost_mat_parameters", ")", ":", "def", "calculate_a", "(", "cl_i", ",", "int_", ",", "n_term", ")", ":", "\"\"\" Private function \"\"\"", "return", "cl_i", "*", "(", "(", "int_", ...
Private function to calculate the cost matrix of credit scoring models. Parameters ---------- income : array of shape = [n_samples] Monthly income of each example debt : array of shape = [n_samples] Debt ratio each example pi_1 : float Percentage of positives in the traini...
[ "Private", "function", "to", "calculate", "the", "cost", "matrix", "of", "credit", "scoring", "models", "." ]
75778ae32c70671c0cdde6c4651277b6a8b58871
https://github.com/albahnsen/CostSensitiveClassification/blob/75778ae32c70671c0cdde6c4651277b6a8b58871/costcla/datasets/base.py#L336-L415
4,048
albahnsen/CostSensitiveClassification
costcla/probcal/probcal.py
ROCConvexHull.predict_proba
def predict_proba(self, p): """ Calculate the calibrated probabilities Parameters ---------- y_prob : array-like of shape = [n_samples, 2] Predicted probabilities to be calibrated using calibration map Returns ------- y_prob_cal : array-like of shape...
python
def predict_proba(self, p): """ Calculate the calibrated probabilities Parameters ---------- y_prob : array-like of shape = [n_samples, 2] Predicted probabilities to be calibrated using calibration map Returns ------- y_prob_cal : array-like of shape...
[ "def", "predict_proba", "(", "self", ",", "p", ")", ":", "# TODO: Check input", "if", "p", ".", "size", "!=", "p", ".", "shape", "[", "0", "]", ":", "p", "=", "p", "[", ":", ",", "1", "]", "calibrated_proba", "=", "np", ".", "zeros", "(", "p", ...
Calculate the calibrated probabilities Parameters ---------- y_prob : array-like of shape = [n_samples, 2] Predicted probabilities to be calibrated using calibration map Returns ------- y_prob_cal : array-like of shape = [n_samples, 1] Predicted ...
[ "Calculate", "the", "calibrated", "probabilities" ]
75778ae32c70671c0cdde6c4651277b6a8b58871
https://github.com/albahnsen/CostSensitiveClassification/blob/75778ae32c70671c0cdde6c4651277b6a8b58871/costcla/probcal/probcal.py#L137-L161
4,049
albahnsen/CostSensitiveClassification
costcla/utils/cross_validation.py
cross_val_score
def cross_val_score(estimator, X, y=None, scoring=None, cv=None, n_jobs=1, verbose=0, fit_params=None, pre_dispatch='2*n_jobs'): """Evaluate a score by cross-validation Parameters ---------- estimator : estimator object implementing 'fit' The object to use to fit the data. ...
python
def cross_val_score(estimator, X, y=None, scoring=None, cv=None, n_jobs=1, verbose=0, fit_params=None, pre_dispatch='2*n_jobs'): """Evaluate a score by cross-validation Parameters ---------- estimator : estimator object implementing 'fit' The object to use to fit the data. ...
[ "def", "cross_val_score", "(", "estimator", ",", "X", ",", "y", "=", "None", ",", "scoring", "=", "None", ",", "cv", "=", "None", ",", "n_jobs", "=", "1", ",", "verbose", "=", "0", ",", "fit_params", "=", "None", ",", "pre_dispatch", "=", "'2*n_jobs'...
Evaluate a score by cross-validation Parameters ---------- estimator : estimator object implementing 'fit' The object to use to fit the data. X : array-like The data to fit. Can be, for example a list, or an array at least 2d. y : array-like, optional, default: None The ta...
[ "Evaluate", "a", "score", "by", "cross", "-", "validation" ]
75778ae32c70671c0cdde6c4651277b6a8b58871
https://github.com/albahnsen/CostSensitiveClassification/blob/75778ae32c70671c0cdde6c4651277b6a8b58871/costcla/utils/cross_validation.py#L1080-L1151
4,050
albahnsen/CostSensitiveClassification
costcla/utils/cross_validation.py
_safe_split
def _safe_split(estimator, X, y, indices, train_indices=None): """Create subset of dataset and properly handle kernels.""" if hasattr(estimator, 'kernel') and isinstance(estimator.kernel, collections.Callable): # cannot compute the kernel values with custom function raise ValueError("Cannot use ...
python
def _safe_split(estimator, X, y, indices, train_indices=None): """Create subset of dataset and properly handle kernels.""" if hasattr(estimator, 'kernel') and isinstance(estimator.kernel, collections.Callable): # cannot compute the kernel values with custom function raise ValueError("Cannot use ...
[ "def", "_safe_split", "(", "estimator", ",", "X", ",", "y", ",", "indices", ",", "train_indices", "=", "None", ")", ":", "if", "hasattr", "(", "estimator", ",", "'kernel'", ")", "and", "isinstance", "(", "estimator", ".", "kernel", ",", "collections", "....
Create subset of dataset and properly handle kernels.
[ "Create", "subset", "of", "dataset", "and", "properly", "handle", "kernels", "." ]
75778ae32c70671c0cdde6c4651277b6a8b58871
https://github.com/albahnsen/CostSensitiveClassification/blob/75778ae32c70671c0cdde6c4651277b6a8b58871/costcla/utils/cross_validation.py#L1258-L1287
4,051
albahnsen/CostSensitiveClassification
costcla/utils/cross_validation.py
_score
def _score(estimator, X_test, y_test, scorer): """Compute the score of an estimator on a given test set.""" if y_test is None: score = scorer(estimator, X_test) else: score = scorer(estimator, X_test, y_test) if not isinstance(score, numbers.Number): raise ValueError("scoring mus...
python
def _score(estimator, X_test, y_test, scorer): """Compute the score of an estimator on a given test set.""" if y_test is None: score = scorer(estimator, X_test) else: score = scorer(estimator, X_test, y_test) if not isinstance(score, numbers.Number): raise ValueError("scoring mus...
[ "def", "_score", "(", "estimator", ",", "X_test", ",", "y_test", ",", "scorer", ")", ":", "if", "y_test", "is", "None", ":", "score", "=", "scorer", "(", "estimator", ",", "X_test", ")", "else", ":", "score", "=", "scorer", "(", "estimator", ",", "X_...
Compute the score of an estimator on a given test set.
[ "Compute", "the", "score", "of", "an", "estimator", "on", "a", "given", "test", "set", "." ]
75778ae32c70671c0cdde6c4651277b6a8b58871
https://github.com/albahnsen/CostSensitiveClassification/blob/75778ae32c70671c0cdde6c4651277b6a8b58871/costcla/utils/cross_validation.py#L1290-L1299
4,052
albahnsen/CostSensitiveClassification
costcla/utils/cross_validation.py
_shuffle
def _shuffle(y, labels, random_state): """Return a shuffled copy of y eventually shuffle among same labels.""" if labels is None: ind = random_state.permutation(len(y)) else: ind = np.arange(len(labels)) for label in np.unique(labels): this_mask = (labels == label) ...
python
def _shuffle(y, labels, random_state): """Return a shuffled copy of y eventually shuffle among same labels.""" if labels is None: ind = random_state.permutation(len(y)) else: ind = np.arange(len(labels)) for label in np.unique(labels): this_mask = (labels == label) ...
[ "def", "_shuffle", "(", "y", ",", "labels", ",", "random_state", ")", ":", "if", "labels", "is", "None", ":", "ind", "=", "random_state", ".", "permutation", "(", "len", "(", "y", ")", ")", "else", ":", "ind", "=", "np", ".", "arange", "(", "len", ...
Return a shuffled copy of y eventually shuffle among same labels.
[ "Return", "a", "shuffled", "copy", "of", "y", "eventually", "shuffle", "among", "same", "labels", "." ]
75778ae32c70671c0cdde6c4651277b6a8b58871
https://github.com/albahnsen/CostSensitiveClassification/blob/75778ae32c70671c0cdde6c4651277b6a8b58871/costcla/utils/cross_validation.py#L1311-L1320
4,053
albahnsen/CostSensitiveClassification
costcla/utils/cross_validation.py
check_cv
def check_cv(cv, X=None, y=None, classifier=False): """Input checker utility for building a CV in a user friendly way. Parameters ---------- cv : int, a cv generator instance, or None The input specifying which cv generator to use. It can be an integer, in which case it is the number of...
python
def check_cv(cv, X=None, y=None, classifier=False): """Input checker utility for building a CV in a user friendly way. Parameters ---------- cv : int, a cv generator instance, or None The input specifying which cv generator to use. It can be an integer, in which case it is the number of...
[ "def", "check_cv", "(", "cv", ",", "X", "=", "None", ",", "y", "=", "None", ",", "classifier", "=", "False", ")", ":", "return", "_check_cv", "(", "cv", ",", "X", "=", "X", ",", "y", "=", "y", ",", "classifier", "=", "classifier", ",", "warn_mask...
Input checker utility for building a CV in a user friendly way. Parameters ---------- cv : int, a cv generator instance, or None The input specifying which cv generator to use. It can be an integer, in which case it is the number of folds in a KFold, None, in which case 3 fold is us...
[ "Input", "checker", "utility", "for", "building", "a", "CV", "in", "a", "user", "friendly", "way", "." ]
75778ae32c70671c0cdde6c4651277b6a8b58871
https://github.com/albahnsen/CostSensitiveClassification/blob/75778ae32c70671c0cdde6c4651277b6a8b58871/costcla/utils/cross_validation.py#L1323-L1350
4,054
albahnsen/CostSensitiveClassification
costcla/sampling/_smote.py
_borderlineSMOTE
def _borderlineSMOTE(X, y, minority_target, N, k): """ Returns synthetic minority samples. Parameters ---------- X : array-like, shape = [n__samples, n_features] Holds the minority and majority samples y : array-like, shape = [n__samples] Holds the class targets for samples ...
python
def _borderlineSMOTE(X, y, minority_target, N, k): """ Returns synthetic minority samples. Parameters ---------- X : array-like, shape = [n__samples, n_features] Holds the minority and majority samples y : array-like, shape = [n__samples] Holds the class targets for samples ...
[ "def", "_borderlineSMOTE", "(", "X", ",", "y", ",", "minority_target", ",", "N", ",", "k", ")", ":", "n_samples", ",", "_", "=", "X", ".", "shape", "#Learn nearest neighbours on complete training set", "neigh", "=", "NearestNeighbors", "(", "n_neighbors", "=", ...
Returns synthetic minority samples. Parameters ---------- X : array-like, shape = [n__samples, n_features] Holds the minority and majority samples y : array-like, shape = [n__samples] Holds the class targets for samples minority_target : value for minority class N : percetange o...
[ "Returns", "synthetic", "minority", "samples", "." ]
75778ae32c70671c0cdde6c4651277b6a8b58871
https://github.com/albahnsen/CostSensitiveClassification/blob/75778ae32c70671c0cdde6c4651277b6a8b58871/costcla/sampling/_smote.py#L91-L147
4,055
albahnsen/CostSensitiveClassification
costcla/models/directcost.py
BayesMinimumRiskClassifier.fit
def fit(self,y_true_cal=None, y_prob_cal=None): """ If calibration, then train the calibration of probabilities Parameters ---------- y_true_cal : array-like of shape = [n_samples], optional default = None True class to be used for calibrating the probabilities y_pr...
python
def fit(self,y_true_cal=None, y_prob_cal=None): """ If calibration, then train the calibration of probabilities Parameters ---------- y_true_cal : array-like of shape = [n_samples], optional default = None True class to be used for calibrating the probabilities y_pr...
[ "def", "fit", "(", "self", ",", "y_true_cal", "=", "None", ",", "y_prob_cal", "=", "None", ")", ":", "if", "self", ".", "calibration", ":", "self", ".", "cal", "=", "ROCConvexHull", "(", ")", "self", ".", "cal", ".", "fit", "(", "y_true_cal", ",", ...
If calibration, then train the calibration of probabilities Parameters ---------- y_true_cal : array-like of shape = [n_samples], optional default = None True class to be used for calibrating the probabilities y_prob_cal : array-like of shape = [n_samples, 2], optional defa...
[ "If", "calibration", "then", "train", "the", "calibration", "of", "probabilities" ]
75778ae32c70671c0cdde6c4651277b6a8b58871
https://github.com/albahnsen/CostSensitiveClassification/blob/75778ae32c70671c0cdde6c4651277b6a8b58871/costcla/models/directcost.py#L56-L74
4,056
albahnsen/CostSensitiveClassification
costcla/models/directcost.py
ThresholdingOptimization.fit
def fit(self, y_prob, cost_mat, y_true): """ Calculate the optimal threshold using the ThresholdingOptimization. Parameters ---------- y_prob : array-like of shape = [n_samples, 2] Predicted probabilities. cost_mat : array-like of shape = [n_samples, 4] ...
python
def fit(self, y_prob, cost_mat, y_true): """ Calculate the optimal threshold using the ThresholdingOptimization. Parameters ---------- y_prob : array-like of shape = [n_samples, 2] Predicted probabilities. cost_mat : array-like of shape = [n_samples, 4] ...
[ "def", "fit", "(", "self", ",", "y_prob", ",", "cost_mat", ",", "y_true", ")", ":", "#TODO: Check input", "if", "self", ".", "calibration", ":", "cal", "=", "ROCConvexHull", "(", ")", "cal", ".", "fit", "(", "y_true", ",", "y_prob", "[", ":", ",", "1...
Calculate the optimal threshold using the ThresholdingOptimization. Parameters ---------- y_prob : array-like of shape = [n_samples, 2] Predicted probabilities. cost_mat : array-like of shape = [n_samples, 4] Cost matrix of the classification problem ...
[ "Calculate", "the", "optimal", "threshold", "using", "the", "ThresholdingOptimization", "." ]
75778ae32c70671c0cdde6c4651277b6a8b58871
https://github.com/albahnsen/CostSensitiveClassification/blob/75778ae32c70671c0cdde6c4651277b6a8b58871/costcla/models/directcost.py#L199-L238
4,057
albahnsen/CostSensitiveClassification
costcla/models/directcost.py
ThresholdingOptimization.predict
def predict(self, y_prob): """ Calculate the prediction using the ThresholdingOptimization. Parameters ---------- y_prob : array-like of shape = [n_samples, 2] Predicted probabilities. Returns ------- y_pred : array-like of shape = [n_samples] ...
python
def predict(self, y_prob): """ Calculate the prediction using the ThresholdingOptimization. Parameters ---------- y_prob : array-like of shape = [n_samples, 2] Predicted probabilities. Returns ------- y_pred : array-like of shape = [n_samples] ...
[ "def", "predict", "(", "self", ",", "y_prob", ")", ":", "y_pred", "=", "np", ".", "floor", "(", "y_prob", "[", ":", ",", "1", "]", "+", "(", "1", "-", "self", ".", "threshold_", ")", ")", "return", "y_pred" ]
Calculate the prediction using the ThresholdingOptimization. Parameters ---------- y_prob : array-like of shape = [n_samples, 2] Predicted probabilities. Returns ------- y_pred : array-like of shape = [n_samples] Predicted class
[ "Calculate", "the", "prediction", "using", "the", "ThresholdingOptimization", "." ]
75778ae32c70671c0cdde6c4651277b6a8b58871
https://github.com/albahnsen/CostSensitiveClassification/blob/75778ae32c70671c0cdde6c4651277b6a8b58871/costcla/models/directcost.py#L240-L255
4,058
albahnsen/CostSensitiveClassification
costcla/sampling/sampling.py
undersampling
def undersampling(X, y, cost_mat=None, per=0.5): """Under-sampling. Parameters ---------- X : array-like of shape = [n_samples, n_features] The input samples. y : array-like of shape = [n_samples] Ground truth (correct) labels. cost_mat : array-like of shap...
python
def undersampling(X, y, cost_mat=None, per=0.5): """Under-sampling. Parameters ---------- X : array-like of shape = [n_samples, n_features] The input samples. y : array-like of shape = [n_samples] Ground truth (correct) labels. cost_mat : array-like of shap...
[ "def", "undersampling", "(", "X", ",", "y", ",", "cost_mat", "=", "None", ",", "per", "=", "0.5", ")", ":", "n_samples", "=", "X", ".", "shape", "[", "0", "]", "#TODO: allow y different from (0, 1)", "num_y1", "=", "y", ".", "sum", "(", ")", "num_y0", ...
Under-sampling. Parameters ---------- X : array-like of shape = [n_samples, n_features] The input samples. y : array-like of shape = [n_samples] Ground truth (correct) labels. cost_mat : array-like of shape = [n_samples, 4], optional (default=None) ...
[ "Under", "-", "sampling", "." ]
75778ae32c70671c0cdde6c4651277b6a8b58871
https://github.com/albahnsen/CostSensitiveClassification/blob/75778ae32c70671c0cdde6c4651277b6a8b58871/costcla/sampling/sampling.py#L11-L57
4,059
albahnsen/CostSensitiveClassification
costcla/models/cost_tree.py
CostSensitiveDecisionTreeClassifier._node_cost
def _node_cost(self, y_true, cost_mat): """ Private function to calculate the cost of a node. Parameters ---------- y_true : array indicator matrix Ground truth (correct) labels. cost_mat : array-like of shape = [n_samples, 4] Cost matrix of the classifi...
python
def _node_cost(self, y_true, cost_mat): """ Private function to calculate the cost of a node. Parameters ---------- y_true : array indicator matrix Ground truth (correct) labels. cost_mat : array-like of shape = [n_samples, 4] Cost matrix of the classifi...
[ "def", "_node_cost", "(", "self", ",", "y_true", ",", "cost_mat", ")", ":", "n_samples", "=", "len", "(", "y_true", ")", "# Evaluates the cost by predicting the node as positive and negative", "costs", "=", "np", ".", "zeros", "(", "2", ")", "costs", "[", "0", ...
Private function to calculate the cost of a node. Parameters ---------- y_true : array indicator matrix Ground truth (correct) labels. cost_mat : array-like of shape = [n_samples, 4] Cost matrix of the classification problem Where the columns represe...
[ "Private", "function", "to", "calculate", "the", "cost", "of", "a", "node", "." ]
75778ae32c70671c0cdde6c4651277b6a8b58871
https://github.com/albahnsen/CostSensitiveClassification/blob/75778ae32c70671c0cdde6c4651277b6a8b58871/costcla/models/cost_tree.py#L138-L183
4,060
albahnsen/CostSensitiveClassification
costcla/models/cost_tree.py
CostSensitiveDecisionTreeClassifier._calculate_gain
def _calculate_gain(self, cost_base, y_true, X, cost_mat, split): """ Private function to calculate the gain in cost of using split in the current node. Parameters ---------- cost_base : float Cost of the naive prediction y_true : array indicator matrix ...
python
def _calculate_gain(self, cost_base, y_true, X, cost_mat, split): """ Private function to calculate the gain in cost of using split in the current node. Parameters ---------- cost_base : float Cost of the naive prediction y_true : array indicator matrix ...
[ "def", "_calculate_gain", "(", "self", ",", "cost_base", ",", "y_true", ",", "X", ",", "cost_mat", ",", "split", ")", ":", "# Check if cost_base == 0, then no gain is possible", "#TODO: This must be check in _best_split", "if", "cost_base", "==", "0.0", ":", "return", ...
Private function to calculate the gain in cost of using split in the current node. Parameters ---------- cost_base : float Cost of the naive prediction y_true : array indicator matrix Ground truth (correct) labels. X : array-like of shape = [n_...
[ "Private", "function", "to", "calculate", "the", "gain", "in", "cost", "of", "using", "split", "in", "the", "current", "node", "." ]
75778ae32c70671c0cdde6c4651277b6a8b58871
https://github.com/albahnsen/CostSensitiveClassification/blob/75778ae32c70671c0cdde6c4651277b6a8b58871/costcla/models/cost_tree.py#L185-L242
4,061
albahnsen/CostSensitiveClassification
costcla/models/cost_tree.py
CostSensitiveDecisionTreeClassifier._best_split
def _best_split(self, y_true, X, cost_mat): """ Private function to calculate the split that gives the best gain. Parameters ---------- y_true : array indicator matrix Ground truth (correct) labels. X : array-like of shape = [n_samples, n_features] The i...
python
def _best_split(self, y_true, X, cost_mat): """ Private function to calculate the split that gives the best gain. Parameters ---------- y_true : array indicator matrix Ground truth (correct) labels. X : array-like of shape = [n_samples, n_features] The i...
[ "def", "_best_split", "(", "self", ",", "y_true", ",", "X", ",", "cost_mat", ")", ":", "n_samples", ",", "n_features", "=", "X", ".", "shape", "num_pct", "=", "self", ".", "num_pct", "cost_base", ",", "y_pred", ",", "y_prob", "=", "self", ".", "_node_c...
Private function to calculate the split that gives the best gain. Parameters ---------- y_true : array indicator matrix Ground truth (correct) labels. X : array-like of shape = [n_samples, n_features] The input samples. cost_mat : array-like of shape = ...
[ "Private", "function", "to", "calculate", "the", "split", "that", "gives", "the", "best", "gain", "." ]
75778ae32c70671c0cdde6c4651277b6a8b58871
https://github.com/albahnsen/CostSensitiveClassification/blob/75778ae32c70671c0cdde6c4651277b6a8b58871/costcla/models/cost_tree.py#L244-L302
4,062
albahnsen/CostSensitiveClassification
costcla/models/cost_tree.py
CostSensitiveDecisionTreeClassifier._tree_grow
def _tree_grow(self, y_true, X, cost_mat, level=0): """ Private recursive function to grow the decision tree. Parameters ---------- y_true : array indicator matrix Ground truth (correct) labels. X : array-like of shape = [n_samples, n_features] The input...
python
def _tree_grow(self, y_true, X, cost_mat, level=0): """ Private recursive function to grow the decision tree. Parameters ---------- y_true : array indicator matrix Ground truth (correct) labels. X : array-like of shape = [n_samples, n_features] The input...
[ "def", "_tree_grow", "(", "self", ",", "y_true", ",", "X", ",", "cost_mat", ",", "level", "=", "0", ")", ":", "#TODO: Find error, add min_samples_split", "if", "len", "(", "X", ".", "shape", ")", "==", "1", ":", "tree", "=", "dict", "(", "y_pred", "=",...
Private recursive function to grow the decision tree. Parameters ---------- y_true : array indicator matrix Ground truth (correct) labels. X : array-like of shape = [n_samples, n_features] The input samples. cost_mat : array-like of shape = [n_samples, ...
[ "Private", "recursive", "function", "to", "grow", "the", "decision", "tree", "." ]
75778ae32c70671c0cdde6c4651277b6a8b58871
https://github.com/albahnsen/CostSensitiveClassification/blob/75778ae32c70671c0cdde6c4651277b6a8b58871/costcla/models/cost_tree.py#L304-L369
4,063
albahnsen/CostSensitiveClassification
costcla/models/cost_tree.py
CostSensitiveDecisionTreeClassifier._nodes
def _nodes(self, tree): """ Private function that find the number of nodes in a tree. Parameters ---------- tree : object Returns ------- nodes : array like of shape [n_nodes] """ def recourse(temp_tree_, nodes): if isinstance(temp_tr...
python
def _nodes(self, tree): """ Private function that find the number of nodes in a tree. Parameters ---------- tree : object Returns ------- nodes : array like of shape [n_nodes] """ def recourse(temp_tree_, nodes): if isinstance(temp_tr...
[ "def", "_nodes", "(", "self", ",", "tree", ")", ":", "def", "recourse", "(", "temp_tree_", ",", "nodes", ")", ":", "if", "isinstance", "(", "temp_tree_", ",", "dict", ")", ":", "if", "temp_tree_", "[", "'split'", "]", "!=", "-", "1", ":", "nodes", ...
Private function that find the number of nodes in a tree. Parameters ---------- tree : object Returns ------- nodes : array like of shape [n_nodes]
[ "Private", "function", "that", "find", "the", "number", "of", "nodes", "in", "a", "tree", "." ]
75778ae32c70671c0cdde6c4651277b6a8b58871
https://github.com/albahnsen/CostSensitiveClassification/blob/75778ae32c70671c0cdde6c4651277b6a8b58871/costcla/models/cost_tree.py#L444-L466
4,064
albahnsen/CostSensitiveClassification
costcla/models/cost_tree.py
CostSensitiveDecisionTreeClassifier._classify
def _classify(self, X, tree, proba=False): """ Private function that classify a dataset using tree. Parameters ---------- X : array-like of shape = [n_samples, n_features] The input samples. tree : object proba : bool, optional (default=False) ...
python
def _classify(self, X, tree, proba=False): """ Private function that classify a dataset using tree. Parameters ---------- X : array-like of shape = [n_samples, n_features] The input samples. tree : object proba : bool, optional (default=False) ...
[ "def", "_classify", "(", "self", ",", "X", ",", "tree", ",", "proba", "=", "False", ")", ":", "n_samples", ",", "n_features", "=", "X", ".", "shape", "predicted", "=", "np", ".", "ones", "(", "n_samples", ")", "# Check if final node", "if", "tree", "["...
Private function that classify a dataset using tree. Parameters ---------- X : array-like of shape = [n_samples, n_features] The input samples. tree : object proba : bool, optional (default=False) If True then return probabilities else return class ...
[ "Private", "function", "that", "classify", "a", "dataset", "using", "tree", "." ]
75778ae32c70671c0cdde6c4651277b6a8b58871
https://github.com/albahnsen/CostSensitiveClassification/blob/75778ae32c70671c0cdde6c4651277b6a8b58871/costcla/models/cost_tree.py#L468-L513
4,065
albahnsen/CostSensitiveClassification
costcla/models/cost_tree.py
CostSensitiveDecisionTreeClassifier.predict
def predict(self, X): """ Predict class of X. The predicted class for each sample in X is returned. Parameters ---------- X : array-like of shape = [n_samples, n_features] The input samples. Returns ------- y : array of shape = [n_samples] ...
python
def predict(self, X): """ Predict class of X. The predicted class for each sample in X is returned. Parameters ---------- X : array-like of shape = [n_samples, n_features] The input samples. Returns ------- y : array of shape = [n_samples] ...
[ "def", "predict", "(", "self", ",", "X", ")", ":", "#TODO: Check consistency of X", "if", "self", ".", "pruned", ":", "tree_", "=", "self", ".", "tree_", ".", "tree_pruned", "else", ":", "tree_", "=", "self", ".", "tree_", ".", "tree", "return", "self", ...
Predict class of X. The predicted class for each sample in X is returned. Parameters ---------- X : array-like of shape = [n_samples, n_features] The input samples. Returns ------- y : array of shape = [n_samples] The predicted classes,
[ "Predict", "class", "of", "X", "." ]
75778ae32c70671c0cdde6c4651277b6a8b58871
https://github.com/albahnsen/CostSensitiveClassification/blob/75778ae32c70671c0cdde6c4651277b6a8b58871/costcla/models/cost_tree.py#L515-L537
4,066
albahnsen/CostSensitiveClassification
costcla/models/cost_tree.py
CostSensitiveDecisionTreeClassifier.predict_proba
def predict_proba(self, X): """Predict class probabilities of the input samples X. Parameters ---------- X : array-like of shape = [n_samples, n_features] The input samples. Returns ------- prob : array of shape = [n_samples, 2] The class...
python
def predict_proba(self, X): """Predict class probabilities of the input samples X. Parameters ---------- X : array-like of shape = [n_samples, n_features] The input samples. Returns ------- prob : array of shape = [n_samples, 2] The class...
[ "def", "predict_proba", "(", "self", ",", "X", ")", ":", "#TODO: Check consistency of X", "n_samples", ",", "n_features", "=", "X", ".", "shape", "prob", "=", "np", ".", "zeros", "(", "(", "n_samples", ",", "2", ")", ")", "if", "self", ".", "pruned", "...
Predict class probabilities of the input samples X. Parameters ---------- X : array-like of shape = [n_samples, n_features] The input samples. Returns ------- prob : array of shape = [n_samples, 2] The class probabilities of the input samples.
[ "Predict", "class", "probabilities", "of", "the", "input", "samples", "X", "." ]
75778ae32c70671c0cdde6c4651277b6a8b58871
https://github.com/albahnsen/CostSensitiveClassification/blob/75778ae32c70671c0cdde6c4651277b6a8b58871/costcla/models/cost_tree.py#L539-L564
4,067
albahnsen/CostSensitiveClassification
costcla/models/cost_tree.py
CostSensitiveDecisionTreeClassifier._delete_node
def _delete_node(self, tree, node): """ Private function that eliminate node from tree. Parameters ---------- tree : object node : int node to be eliminated from tree Returns ------- pruned_tree : object """ # Calculate gai...
python
def _delete_node(self, tree, node): """ Private function that eliminate node from tree. Parameters ---------- tree : object node : int node to be eliminated from tree Returns ------- pruned_tree : object """ # Calculate gai...
[ "def", "_delete_node", "(", "self", ",", "tree", ",", "node", ")", ":", "# Calculate gains", "temp_tree", "=", "copy", ".", "deepcopy", "(", "tree", ")", "def", "recourse", "(", "temp_tree_", ",", "del_node", ")", ":", "if", "isinstance", "(", "temp_tree_"...
Private function that eliminate node from tree. Parameters ---------- tree : object node : int node to be eliminated from tree Returns ------- pruned_tree : object
[ "Private", "function", "that", "eliminate", "node", "from", "tree", "." ]
75778ae32c70671c0cdde6c4651277b6a8b58871
https://github.com/albahnsen/CostSensitiveClassification/blob/75778ae32c70671c0cdde6c4651277b6a8b58871/costcla/models/cost_tree.py#L566-L599
4,068
albahnsen/CostSensitiveClassification
costcla/models/cost_tree.py
CostSensitiveDecisionTreeClassifier._pruning
def _pruning(self, X, y_true, cost_mat): """ Private function that prune the decision tree. Parameters ---------- X : array-like of shape = [n_samples, n_features] The input samples. y_true : array indicator matrix Ground truth (correct) labels. ...
python
def _pruning(self, X, y_true, cost_mat): """ Private function that prune the decision tree. Parameters ---------- X : array-like of shape = [n_samples, n_features] The input samples. y_true : array indicator matrix Ground truth (correct) labels. ...
[ "def", "_pruning", "(", "self", ",", "X", ",", "y_true", ",", "cost_mat", ")", ":", "# Calculate gains", "nodes", "=", "self", ".", "_nodes", "(", "self", ".", "tree_", ".", "tree_pruned", ")", "n_nodes", "=", "len", "(", "nodes", ")", "gains", "=", ...
Private function that prune the decision tree. Parameters ---------- X : array-like of shape = [n_samples, n_features] The input samples. y_true : array indicator matrix Ground truth (correct) labels. cost_mat : array-like of shape = [n_samples, 4] ...
[ "Private", "function", "that", "prune", "the", "decision", "tree", "." ]
75778ae32c70671c0cdde6c4651277b6a8b58871
https://github.com/albahnsen/CostSensitiveClassification/blob/75778ae32c70671c0cdde6c4651277b6a8b58871/costcla/models/cost_tree.py#L601-L652
4,069
albahnsen/CostSensitiveClassification
costcla/models/cost_tree.py
CostSensitiveDecisionTreeClassifier.pruning
def pruning(self, X, y, cost_mat): """ Function that prune the decision tree. Parameters ---------- X : array-like of shape = [n_samples, n_features] The input samples. y_true : array indicator matrix Ground truth (correct) labels. cost_mat : a...
python
def pruning(self, X, y, cost_mat): """ Function that prune the decision tree. Parameters ---------- X : array-like of shape = [n_samples, n_features] The input samples. y_true : array indicator matrix Ground truth (correct) labels. cost_mat : a...
[ "def", "pruning", "(", "self", ",", "X", ",", "y", ",", "cost_mat", ")", ":", "self", ".", "tree_", ".", "tree_pruned", "=", "copy", ".", "deepcopy", "(", "self", ".", "tree_", ".", "tree", ")", "if", "self", ".", "tree_", ".", "n_nodes", ">", "0...
Function that prune the decision tree. Parameters ---------- X : array-like of shape = [n_samples, n_features] The input samples. y_true : array indicator matrix Ground truth (correct) labels. cost_mat : array-like of shape = [n_samples, 4] ...
[ "Function", "that", "prune", "the", "decision", "tree", "." ]
75778ae32c70671c0cdde6c4651277b6a8b58871
https://github.com/albahnsen/CostSensitiveClassification/blob/75778ae32c70671c0cdde6c4651277b6a8b58871/costcla/models/cost_tree.py#L654-L676
4,070
albahnsen/CostSensitiveClassification
costcla/metrics/costs.py
cost_loss
def cost_loss(y_true, y_pred, cost_mat): #TODO: update description """Cost classification loss. This function calculates the cost of using y_pred on y_true with cost-matrix cost-mat. It differ from traditional classification evaluation measures since measures such as accuracy asing the same cost to...
python
def cost_loss(y_true, y_pred, cost_mat): #TODO: update description """Cost classification loss. This function calculates the cost of using y_pred on y_true with cost-matrix cost-mat. It differ from traditional classification evaluation measures since measures such as accuracy asing the same cost to...
[ "def", "cost_loss", "(", "y_true", ",", "y_pred", ",", "cost_mat", ")", ":", "#TODO: update description", "#TODO: Check consistency of cost_mat", "y_true", "=", "column_or_1d", "(", "y_true", ")", "y_true", "=", "(", "y_true", "==", "1", ")", ".", "astype", "(",...
Cost classification loss. This function calculates the cost of using y_pred on y_true with cost-matrix cost-mat. It differ from traditional classification evaluation measures since measures such as accuracy asing the same cost to different errors, but that is not the real case in several real-world cla...
[ "Cost", "classification", "loss", "." ]
75778ae32c70671c0cdde6c4651277b6a8b58871
https://github.com/albahnsen/CostSensitiveClassification/blob/75778ae32c70671c0cdde6c4651277b6a8b58871/costcla/metrics/costs.py#L19-L81
4,071
albahnsen/CostSensitiveClassification
costcla/metrics/costs.py
savings_score
def savings_score(y_true, y_pred, cost_mat): #TODO: update description """Savings score. This function calculates the savings cost of using y_pred on y_true with cost-matrix cost-mat, as the difference of y_pred and the cost_loss of a naive classification model. Parameters ---------- y...
python
def savings_score(y_true, y_pred, cost_mat): #TODO: update description """Savings score. This function calculates the savings cost of using y_pred on y_true with cost-matrix cost-mat, as the difference of y_pred and the cost_loss of a naive classification model. Parameters ---------- y...
[ "def", "savings_score", "(", "y_true", ",", "y_pred", ",", "cost_mat", ")", ":", "#TODO: update description", "#TODO: Check consistency of cost_mat", "y_true", "=", "column_or_1d", "(", "y_true", ")", "y_pred", "=", "column_or_1d", "(", "y_pred", ")", "n_samples", "...
Savings score. This function calculates the savings cost of using y_pred on y_true with cost-matrix cost-mat, as the difference of y_pred and the cost_loss of a naive classification model. Parameters ---------- y_true : array-like or label indicator matrix Ground truth (correct) labels...
[ "Savings", "score", "." ]
75778ae32c70671c0cdde6c4651277b6a8b58871
https://github.com/albahnsen/CostSensitiveClassification/blob/75778ae32c70671c0cdde6c4651277b6a8b58871/costcla/metrics/costs.py#L84-L143
4,072
albahnsen/CostSensitiveClassification
costcla/metrics/costs.py
brier_score_loss
def brier_score_loss(y_true, y_prob): """Compute the Brier score The smaller the Brier score, the better, hence the naming with "loss". Across all items in a set N predictions, the Brier score measures the mean squared difference between (1) the predicted probability assigned to the possible outco...
python
def brier_score_loss(y_true, y_prob): """Compute the Brier score The smaller the Brier score, the better, hence the naming with "loss". Across all items in a set N predictions, the Brier score measures the mean squared difference between (1) the predicted probability assigned to the possible outco...
[ "def", "brier_score_loss", "(", "y_true", ",", "y_prob", ")", ":", "y_true", "=", "column_or_1d", "(", "y_true", ")", "y_prob", "=", "column_or_1d", "(", "y_prob", ")", "return", "np", ".", "mean", "(", "(", "y_true", "-", "y_prob", ")", "**", "2", ")"...
Compute the Brier score The smaller the Brier score, the better, hence the naming with "loss". Across all items in a set N predictions, the Brier score measures the mean squared difference between (1) the predicted probability assigned to the possible outcomes for item i, and (2) the actual outcome. ...
[ "Compute", "the", "Brier", "score" ]
75778ae32c70671c0cdde6c4651277b6a8b58871
https://github.com/albahnsen/CostSensitiveClassification/blob/75778ae32c70671c0cdde6c4651277b6a8b58871/costcla/metrics/costs.py#L149-L200
4,073
albahnsen/CostSensitiveClassification
costcla/models/regression.py
_logistic_cost_loss
def _logistic_cost_loss(w, X, y, cost_mat, alpha): """Computes the logistic loss. Parameters ---------- w : array-like, shape (n_w, n_features,) or (n_w, n_features + 1,) Coefficient vector or matrix of coefficient. X : array-like, shape (n_samples, n_features) Training data. ...
python
def _logistic_cost_loss(w, X, y, cost_mat, alpha): """Computes the logistic loss. Parameters ---------- w : array-like, shape (n_w, n_features,) or (n_w, n_features + 1,) Coefficient vector or matrix of coefficient. X : array-like, shape (n_samples, n_features) Training data. ...
[ "def", "_logistic_cost_loss", "(", "w", ",", "X", ",", "y", ",", "cost_mat", ",", "alpha", ")", ":", "if", "w", ".", "shape", "[", "0", "]", "==", "w", ".", "size", ":", "# Only evaluating one w", "return", "_logistic_cost_loss_i", "(", "w", ",", "X", ...
Computes the logistic loss. Parameters ---------- w : array-like, shape (n_w, n_features,) or (n_w, n_features + 1,) Coefficient vector or matrix of coefficient. X : array-like, shape (n_samples, n_features) Training data. y : ndarray, shape (n_samples,) Array of labels. ...
[ "Computes", "the", "logistic", "loss", "." ]
75778ae32c70671c0cdde6c4651277b6a8b58871
https://github.com/albahnsen/CostSensitiveClassification/blob/75778ae32c70671c0cdde6c4651277b6a8b58871/costcla/models/regression.py#L58-L98
4,074
albahnsen/CostSensitiveClassification
costcla/models/regression.py
CostSensitiveLogisticRegression.predict
def predict(self, X, cut_point=0.5): """Predicted class. Parameters ---------- X : array-like, shape = [n_samples, n_features] Returns ------- T : array-like, shape = [n_samples] Returns the prediction of the sample.. """ return np.fl...
python
def predict(self, X, cut_point=0.5): """Predicted class. Parameters ---------- X : array-like, shape = [n_samples, n_features] Returns ------- T : array-like, shape = [n_samples] Returns the prediction of the sample.. """ return np.fl...
[ "def", "predict", "(", "self", ",", "X", ",", "cut_point", "=", "0.5", ")", ":", "return", "np", ".", "floor", "(", "self", ".", "predict_proba", "(", "X", ")", "[", ":", ",", "1", "]", "+", "(", "1", "-", "cut_point", ")", ")" ]
Predicted class. Parameters ---------- X : array-like, shape = [n_samples, n_features] Returns ------- T : array-like, shape = [n_samples] Returns the prediction of the sample..
[ "Predicted", "class", "." ]
75778ae32c70671c0cdde6c4651277b6a8b58871
https://github.com/albahnsen/CostSensitiveClassification/blob/75778ae32c70671c0cdde6c4651277b6a8b58871/costcla/models/regression.py#L278-L290
4,075
MozillaSecurity/laniakea
laniakea/core/userdata.py
UserData.list_tags
def list_tags(userdata): """List all used macros within a UserData script. :param userdata: The UserData script. :type userdata: str """ macros = re.findall('@(.*?)@', userdata) logging.info('List of available macros:') for macro in macros: logging.in...
python
def list_tags(userdata): """List all used macros within a UserData script. :param userdata: The UserData script. :type userdata: str """ macros = re.findall('@(.*?)@', userdata) logging.info('List of available macros:') for macro in macros: logging.in...
[ "def", "list_tags", "(", "userdata", ")", ":", "macros", "=", "re", ".", "findall", "(", "'@(.*?)@'", ",", "userdata", ")", "logging", ".", "info", "(", "'List of available macros:'", ")", "for", "macro", "in", "macros", ":", "logging", ".", "info", "(", ...
List all used macros within a UserData script. :param userdata: The UserData script. :type userdata: str
[ "List", "all", "used", "macros", "within", "a", "UserData", "script", "." ]
7e80adc6ae92c6c1332d4c08473bb271fb3b6833
https://github.com/MozillaSecurity/laniakea/blob/7e80adc6ae92c6c1332d4c08473bb271fb3b6833/laniakea/core/userdata.py#L54-L63
4,076
MozillaSecurity/laniakea
laniakea/core/userdata.py
UserData.handle_tags
def handle_tags(userdata, macros): """Insert macro values or auto export variables in UserData scripts. :param userdata: The UserData script. :type userdata: str :param macros: UserData macros as key value pair. :type macros: dict :return: UserData script with the macros...
python
def handle_tags(userdata, macros): """Insert macro values or auto export variables in UserData scripts. :param userdata: The UserData script. :type userdata: str :param macros: UserData macros as key value pair. :type macros: dict :return: UserData script with the macros...
[ "def", "handle_tags", "(", "userdata", ",", "macros", ")", ":", "macro_vars", "=", "re", ".", "findall", "(", "'@(.*?)@'", ",", "userdata", ")", "for", "macro_var", "in", "macro_vars", ":", "if", "macro_var", "==", "'!all_macros_export'", ":", "macro_var_expor...
Insert macro values or auto export variables in UserData scripts. :param userdata: The UserData script. :type userdata: str :param macros: UserData macros as key value pair. :type macros: dict :return: UserData script with the macros replaced with their values. :rtype: s...
[ "Insert", "macro", "values", "or", "auto", "export", "variables", "in", "UserData", "scripts", "." ]
7e80adc6ae92c6c1332d4c08473bb271fb3b6833
https://github.com/MozillaSecurity/laniakea/blob/7e80adc6ae92c6c1332d4c08473bb271fb3b6833/laniakea/core/userdata.py#L66-L109
4,077
MozillaSecurity/laniakea
laniakea/core/providers/ec2/manager.py
EC2Manager.retry_on_ec2_error
def retry_on_ec2_error(self, func, *args, **kwargs): """ Call the given method with the given arguments, retrying if the call failed due to an EC2ResponseError. This method will wait at most 30 seconds and perform up to 6 retries. If the method still fails, it will propagate the ...
python
def retry_on_ec2_error(self, func, *args, **kwargs): """ Call the given method with the given arguments, retrying if the call failed due to an EC2ResponseError. This method will wait at most 30 seconds and perform up to 6 retries. If the method still fails, it will propagate the ...
[ "def", "retry_on_ec2_error", "(", "self", ",", "func", ",", "*", "args", ",", "*", "*", "kwargs", ")", ":", "exception_retry_count", "=", "6", "while", "True", ":", "try", ":", "return", "func", "(", "*", "args", ",", "*", "*", "kwargs", ")", "except...
Call the given method with the given arguments, retrying if the call failed due to an EC2ResponseError. This method will wait at most 30 seconds and perform up to 6 retries. If the method still fails, it will propagate the error. :param func: Function to call :type func: functio...
[ "Call", "the", "given", "method", "with", "the", "given", "arguments", "retrying", "if", "the", "call", "failed", "due", "to", "an", "EC2ResponseError", ".", "This", "method", "will", "wait", "at", "most", "30", "seconds", "and", "perform", "up", "to", "6"...
7e80adc6ae92c6c1332d4c08473bb271fb3b6833
https://github.com/MozillaSecurity/laniakea/blob/7e80adc6ae92c6c1332d4c08473bb271fb3b6833/laniakea/core/providers/ec2/manager.py#L36-L54
4,078
MozillaSecurity/laniakea
laniakea/core/providers/ec2/manager.py
EC2Manager.connect
def connect(self, region, **kw_params): """Connect to a EC2. :param region: The name of the region to connect to. :type region: str :param kw_params: :type kw_params: dict """ self.ec2 = boto.ec2.connect_to_region(region, **kw_params) if not self.ec2: ...
python
def connect(self, region, **kw_params): """Connect to a EC2. :param region: The name of the region to connect to. :type region: str :param kw_params: :type kw_params: dict """ self.ec2 = boto.ec2.connect_to_region(region, **kw_params) if not self.ec2: ...
[ "def", "connect", "(", "self", ",", "region", ",", "*", "*", "kw_params", ")", ":", "self", ".", "ec2", "=", "boto", ".", "ec2", ".", "connect_to_region", "(", "region", ",", "*", "*", "kw_params", ")", "if", "not", "self", ".", "ec2", ":", "raise"...
Connect to a EC2. :param region: The name of the region to connect to. :type region: str :param kw_params: :type kw_params: dict
[ "Connect", "to", "a", "EC2", "." ]
7e80adc6ae92c6c1332d4c08473bb271fb3b6833
https://github.com/MozillaSecurity/laniakea/blob/7e80adc6ae92c6c1332d4c08473bb271fb3b6833/laniakea/core/providers/ec2/manager.py#L56-L72
4,079
MozillaSecurity/laniakea
laniakea/core/providers/ec2/manager.py
EC2Manager.resolve_image_name
def resolve_image_name(self, image_name): """Look up an AMI for the connected region based on an image name. :param image_name: The name of the image to resolve. :type image_name: str :return: The AMI for the given image. :rtype: str """ # look at each scope in o...
python
def resolve_image_name(self, image_name): """Look up an AMI for the connected region based on an image name. :param image_name: The name of the image to resolve. :type image_name: str :return: The AMI for the given image. :rtype: str """ # look at each scope in o...
[ "def", "resolve_image_name", "(", "self", ",", "image_name", ")", ":", "# look at each scope in order of size", "scopes", "=", "[", "'self'", ",", "'amazon'", ",", "'aws-marketplace'", "]", "if", "image_name", "in", "self", ".", "remote_images", ":", "return", "se...
Look up an AMI for the connected region based on an image name. :param image_name: The name of the image to resolve. :type image_name: str :return: The AMI for the given image. :rtype: str
[ "Look", "up", "an", "AMI", "for", "the", "connected", "region", "based", "on", "an", "image", "name", "." ]
7e80adc6ae92c6c1332d4c08473bb271fb3b6833
https://github.com/MozillaSecurity/laniakea/blob/7e80adc6ae92c6c1332d4c08473bb271fb3b6833/laniakea/core/providers/ec2/manager.py#L74-L92
4,080
MozillaSecurity/laniakea
laniakea/core/providers/ec2/manager.py
EC2Manager.create_on_demand
def create_on_demand(self, instance_type='default', tags=None, root_device_type='ebs', size='default', vol_type='gp2', delete_on_termination=False): """Create one...
python
def create_on_demand(self, instance_type='default', tags=None, root_device_type='ebs', size='default', vol_type='gp2', delete_on_termination=False): """Create one...
[ "def", "create_on_demand", "(", "self", ",", "instance_type", "=", "'default'", ",", "tags", "=", "None", ",", "root_device_type", "=", "'ebs'", ",", "size", "=", "'default'", ",", "vol_type", "=", "'gp2'", ",", "delete_on_termination", "=", "False", ")", ":...
Create one or more EC2 on-demand instances. :param size: Size of root device :type size: int :param delete_on_termination: :type delete_on_termination: boolean :param vol_type: :type vol_type: str :param root_device_type: The type of the root device. :typ...
[ "Create", "one", "or", "more", "EC2", "on", "-", "demand", "instances", "." ]
7e80adc6ae92c6c1332d4c08473bb271fb3b6833
https://github.com/MozillaSecurity/laniakea/blob/7e80adc6ae92c6c1332d4c08473bb271fb3b6833/laniakea/core/providers/ec2/manager.py#L94-L144
4,081
MozillaSecurity/laniakea
laniakea/core/providers/ec2/manager.py
EC2Manager.create_spot_requests
def create_spot_requests(self, price, instance_type='default', root_device_type='ebs', size='default', vol_type='gp2', delete_on_termination=False...
python
def create_spot_requests(self, price, instance_type='default', root_device_type='ebs', size='default', vol_type='gp2', delete_on_termination=False...
[ "def", "create_spot_requests", "(", "self", ",", "price", ",", "instance_type", "=", "'default'", ",", "root_device_type", "=", "'ebs'", ",", "size", "=", "'default'", ",", "vol_type", "=", "'gp2'", ",", "delete_on_termination", "=", "False", ",", "timeout", "...
Request creation of one or more EC2 spot instances. :param size: :param vol_type: :param delete_on_termination: :param root_device_type: The type of the root device. :type root_device_type: str :param price: Max price to pay for spot instance per hour. :type pric...
[ "Request", "creation", "of", "one", "or", "more", "EC2", "spot", "instances", "." ]
7e80adc6ae92c6c1332d4c08473bb271fb3b6833
https://github.com/MozillaSecurity/laniakea/blob/7e80adc6ae92c6c1332d4c08473bb271fb3b6833/laniakea/core/providers/ec2/manager.py#L146-L181
4,082
MozillaSecurity/laniakea
laniakea/core/providers/ec2/manager.py
EC2Manager.check_spot_requests
def check_spot_requests(self, requests, tags=None): """Check status of one or more EC2 spot instance requests. :param requests: List of EC2 spot instance request IDs. :type requests: list :param tags: :type tags: dict :return: List of boto.ec2.instance.Instance's created...
python
def check_spot_requests(self, requests, tags=None): """Check status of one or more EC2 spot instance requests. :param requests: List of EC2 spot instance request IDs. :type requests: list :param tags: :type tags: dict :return: List of boto.ec2.instance.Instance's created...
[ "def", "check_spot_requests", "(", "self", ",", "requests", ",", "tags", "=", "None", ")", ":", "instances", "=", "[", "None", "]", "*", "len", "(", "requests", ")", "ec2_requests", "=", "self", ".", "retry_on_ec2_error", "(", "self", ".", "ec2", ".", ...
Check status of one or more EC2 spot instance requests. :param requests: List of EC2 spot instance request IDs. :type requests: list :param tags: :type tags: dict :return: List of boto.ec2.instance.Instance's created, order corresponding to requests param (None if request ...
[ "Check", "status", "of", "one", "or", "more", "EC2", "spot", "instance", "requests", "." ]
7e80adc6ae92c6c1332d4c08473bb271fb3b6833
https://github.com/MozillaSecurity/laniakea/blob/7e80adc6ae92c6c1332d4c08473bb271fb3b6833/laniakea/core/providers/ec2/manager.py#L183-L221
4,083
MozillaSecurity/laniakea
laniakea/core/providers/ec2/manager.py
EC2Manager.cancel_spot_requests
def cancel_spot_requests(self, requests): """Cancel one or more EC2 spot instance requests. :param requests: List of EC2 spot instance request IDs. :type requests: list """ ec2_requests = self.retry_on_ec2_error(self.ec2.get_all_spot_instance_requests, request_ids=requests) ...
python
def cancel_spot_requests(self, requests): """Cancel one or more EC2 spot instance requests. :param requests: List of EC2 spot instance request IDs. :type requests: list """ ec2_requests = self.retry_on_ec2_error(self.ec2.get_all_spot_instance_requests, request_ids=requests) ...
[ "def", "cancel_spot_requests", "(", "self", ",", "requests", ")", ":", "ec2_requests", "=", "self", ".", "retry_on_ec2_error", "(", "self", ".", "ec2", ".", "get_all_spot_instance_requests", ",", "request_ids", "=", "requests", ")", "for", "req", "in", "ec2_requ...
Cancel one or more EC2 spot instance requests. :param requests: List of EC2 spot instance request IDs. :type requests: list
[ "Cancel", "one", "or", "more", "EC2", "spot", "instance", "requests", "." ]
7e80adc6ae92c6c1332d4c08473bb271fb3b6833
https://github.com/MozillaSecurity/laniakea/blob/7e80adc6ae92c6c1332d4c08473bb271fb3b6833/laniakea/core/providers/ec2/manager.py#L223-L232
4,084
MozillaSecurity/laniakea
laniakea/core/providers/ec2/manager.py
EC2Manager.create_spot
def create_spot(self, price, instance_type='default', tags=None, root_device_type='ebs', size='default', vol_type='gp2', delete_on_termination=False, timeout=No...
python
def create_spot(self, price, instance_type='default', tags=None, root_device_type='ebs', size='default', vol_type='gp2', delete_on_termination=False, timeout=No...
[ "def", "create_spot", "(", "self", ",", "price", ",", "instance_type", "=", "'default'", ",", "tags", "=", "None", ",", "root_device_type", "=", "'ebs'", ",", "size", "=", "'default'", ",", "vol_type", "=", "'gp2'", ",", "delete_on_termination", "=", "False"...
Create one or more EC2 spot instances. :param root_device_type: :param size: :param vol_type: :param delete_on_termination: :param timeout: :param price: Max price to pay for spot instance per hour. :type price: float :param instance_type: A section name ...
[ "Create", "one", "or", "more", "EC2", "spot", "instances", "." ]
7e80adc6ae92c6c1332d4c08473bb271fb3b6833
https://github.com/MozillaSecurity/laniakea/blob/7e80adc6ae92c6c1332d4c08473bb271fb3b6833/laniakea/core/providers/ec2/manager.py#L234-L294
4,085
MozillaSecurity/laniakea
laniakea/core/providers/ec2/manager.py
EC2Manager._scale_down
def _scale_down(self, instances, count): """Return a list of |count| last created instances by launch time. :param instances: A list of instances. :type instances: list :param count: Number of instances to scale down. :type count: integer :return: List of instances to be...
python
def _scale_down(self, instances, count): """Return a list of |count| last created instances by launch time. :param instances: A list of instances. :type instances: list :param count: Number of instances to scale down. :type count: integer :return: List of instances to be...
[ "def", "_scale_down", "(", "self", ",", "instances", ",", "count", ")", ":", "i", "=", "sorted", "(", "instances", ",", "key", "=", "lambda", "i", ":", "i", ".", "launch_time", ",", "reverse", "=", "True", ")", "if", "not", "i", ":", "return", "[",...
Return a list of |count| last created instances by launch time. :param instances: A list of instances. :type instances: list :param count: Number of instances to scale down. :type count: integer :return: List of instances to be scaled down. :rtype: list
[ "Return", "a", "list", "of", "|count|", "last", "created", "instances", "by", "launch", "time", "." ]
7e80adc6ae92c6c1332d4c08473bb271fb3b6833
https://github.com/MozillaSecurity/laniakea/blob/7e80adc6ae92c6c1332d4c08473bb271fb3b6833/laniakea/core/providers/ec2/manager.py#L296-L315
4,086
MozillaSecurity/laniakea
laniakea/core/providers/ec2/manager.py
EC2Manager._configure_ebs_volume
def _configure_ebs_volume(self, vol_type, name, size, delete_on_termination): """Sets the desired root EBS size, otherwise the default EC2 value is used. :param vol_type: Type of EBS storage - gp2 (SSD), io1 or standard (magnetic) :type vol_type: str :param size: Desired root EBS size. ...
python
def _configure_ebs_volume(self, vol_type, name, size, delete_on_termination): """Sets the desired root EBS size, otherwise the default EC2 value is used. :param vol_type: Type of EBS storage - gp2 (SSD), io1 or standard (magnetic) :type vol_type: str :param size: Desired root EBS size. ...
[ "def", "_configure_ebs_volume", "(", "self", ",", "vol_type", ",", "name", ",", "size", ",", "delete_on_termination", ")", ":", "# From GitHub boto docs: http://git.io/veyDv", "root_dev", "=", "boto", ".", "ec2", ".", "blockdevicemapping", ".", "BlockDeviceType", "(",...
Sets the desired root EBS size, otherwise the default EC2 value is used. :param vol_type: Type of EBS storage - gp2 (SSD), io1 or standard (magnetic) :type vol_type: str :param size: Desired root EBS size. :type size: int :param delete_on_termination: Toggle this flag to delete ...
[ "Sets", "the", "desired", "root", "EBS", "size", "otherwise", "the", "default", "EC2", "value", "is", "used", "." ]
7e80adc6ae92c6c1332d4c08473bb271fb3b6833
https://github.com/MozillaSecurity/laniakea/blob/7e80adc6ae92c6c1332d4c08473bb271fb3b6833/laniakea/core/providers/ec2/manager.py#L337-L357
4,087
MozillaSecurity/laniakea
laniakea/core/providers/ec2/manager.py
EC2Manager.stop
def stop(self, instances, count=0): """Stop each provided running instance. :param count: :param instances: A list of instances. :type instances: list """ if not instances: return if count > 0: instances = self._scale_down(instances, count...
python
def stop(self, instances, count=0): """Stop each provided running instance. :param count: :param instances: A list of instances. :type instances: list """ if not instances: return if count > 0: instances = self._scale_down(instances, count...
[ "def", "stop", "(", "self", ",", "instances", ",", "count", "=", "0", ")", ":", "if", "not", "instances", ":", "return", "if", "count", ">", "0", ":", "instances", "=", "self", ".", "_scale_down", "(", "instances", ",", "count", ")", "self", ".", "...
Stop each provided running instance. :param count: :param instances: A list of instances. :type instances: list
[ "Stop", "each", "provided", "running", "instance", "." ]
7e80adc6ae92c6c1332d4c08473bb271fb3b6833
https://github.com/MozillaSecurity/laniakea/blob/7e80adc6ae92c6c1332d4c08473bb271fb3b6833/laniakea/core/providers/ec2/manager.py#L359-L370
4,088
MozillaSecurity/laniakea
laniakea/core/providers/ec2/manager.py
EC2Manager.terminate
def terminate(self, instances, count=0): """Terminate each provided running or stopped instance. :param count: :param instances: A list of instances. :type instances: list """ if not instances: return if count > 0: instances = self._scale_...
python
def terminate(self, instances, count=0): """Terminate each provided running or stopped instance. :param count: :param instances: A list of instances. :type instances: list """ if not instances: return if count > 0: instances = self._scale_...
[ "def", "terminate", "(", "self", ",", "instances", ",", "count", "=", "0", ")", ":", "if", "not", "instances", ":", "return", "if", "count", ">", "0", ":", "instances", "=", "self", ".", "_scale_down", "(", "instances", ",", "count", ")", "self", "."...
Terminate each provided running or stopped instance. :param count: :param instances: A list of instances. :type instances: list
[ "Terminate", "each", "provided", "running", "or", "stopped", "instance", "." ]
7e80adc6ae92c6c1332d4c08473bb271fb3b6833
https://github.com/MozillaSecurity/laniakea/blob/7e80adc6ae92c6c1332d4c08473bb271fb3b6833/laniakea/core/providers/ec2/manager.py#L372-L383
4,089
MozillaSecurity/laniakea
laniakea/core/providers/ec2/manager.py
EC2Manager.find
def find(self, instance_ids=None, filters=None): """Flatten list of reservations to a list of instances. :param instance_ids: A list of instance ids to filter by :type instance_ids: list :param filters: A dict of Filter.N values defined in http://goo.gl/jYNej9 :type filters: dic...
python
def find(self, instance_ids=None, filters=None): """Flatten list of reservations to a list of instances. :param instance_ids: A list of instance ids to filter by :type instance_ids: list :param filters: A dict of Filter.N values defined in http://goo.gl/jYNej9 :type filters: dic...
[ "def", "find", "(", "self", ",", "instance_ids", "=", "None", ",", "filters", "=", "None", ")", ":", "instances", "=", "[", "]", "reservations", "=", "self", ".", "retry_on_ec2_error", "(", "self", ".", "ec2", ".", "get_all_instances", ",", "instance_ids",...
Flatten list of reservations to a list of instances. :param instance_ids: A list of instance ids to filter by :type instance_ids: list :param filters: A dict of Filter.N values defined in http://goo.gl/jYNej9 :type filters: dict :return: A flattened list of filtered instances. ...
[ "Flatten", "list", "of", "reservations", "to", "a", "list", "of", "instances", "." ]
7e80adc6ae92c6c1332d4c08473bb271fb3b6833
https://github.com/MozillaSecurity/laniakea/blob/7e80adc6ae92c6c1332d4c08473bb271fb3b6833/laniakea/core/providers/ec2/manager.py#L385-L399
4,090
MozillaSecurity/laniakea
laniakea/core/common.py
ModuleLoader.load
def load(self, root, module_path, pkg_name): """Load modules dynamically. """ root = os.path.join(root, module_path) import_name = os.path.join(pkg_name, module_path).replace(os.sep, '.') for (_, name, _) in pkgutil.iter_modules([root]): self.modules[name] = import_mo...
python
def load(self, root, module_path, pkg_name): """Load modules dynamically. """ root = os.path.join(root, module_path) import_name = os.path.join(pkg_name, module_path).replace(os.sep, '.') for (_, name, _) in pkgutil.iter_modules([root]): self.modules[name] = import_mo...
[ "def", "load", "(", "self", ",", "root", ",", "module_path", ",", "pkg_name", ")", ":", "root", "=", "os", ".", "path", ".", "join", "(", "root", ",", "module_path", ")", "import_name", "=", "os", ".", "path", ".", "join", "(", "pkg_name", ",", "mo...
Load modules dynamically.
[ "Load", "modules", "dynamically", "." ]
7e80adc6ae92c6c1332d4c08473bb271fb3b6833
https://github.com/MozillaSecurity/laniakea/blob/7e80adc6ae92c6c1332d4c08473bb271fb3b6833/laniakea/core/common.py#L155-L162
4,091
MozillaSecurity/laniakea
laniakea/core/common.py
ModuleLoader.command_line_interfaces
def command_line_interfaces(self): """Return the CommandLine classes from each provider. """ interfaces = [] for _, module in self.modules.items(): for entry in dir(module): if entry.endswith('CommandLine'): interfaces.append((module, entry...
python
def command_line_interfaces(self): """Return the CommandLine classes from each provider. """ interfaces = [] for _, module in self.modules.items(): for entry in dir(module): if entry.endswith('CommandLine'): interfaces.append((module, entry...
[ "def", "command_line_interfaces", "(", "self", ")", ":", "interfaces", "=", "[", "]", "for", "_", ",", "module", "in", "self", ".", "modules", ".", "items", "(", ")", ":", "for", "entry", "in", "dir", "(", "module", ")", ":", "if", "entry", ".", "e...
Return the CommandLine classes from each provider.
[ "Return", "the", "CommandLine", "classes", "from", "each", "provider", "." ]
7e80adc6ae92c6c1332d4c08473bb271fb3b6833
https://github.com/MozillaSecurity/laniakea/blob/7e80adc6ae92c6c1332d4c08473bb271fb3b6833/laniakea/core/common.py#L164-L172
4,092
MozillaSecurity/laniakea
laniakea/core/common.py
Common.pluralize
def pluralize(item): """Nothing to see here. """ assert isinstance(item, (int, list)) if isinstance(item, int): return 's' if item > 1 else '' if isinstance(item, list): return 's' if len(item) > 1 else '' return ''
python
def pluralize(item): """Nothing to see here. """ assert isinstance(item, (int, list)) if isinstance(item, int): return 's' if item > 1 else '' if isinstance(item, list): return 's' if len(item) > 1 else '' return ''
[ "def", "pluralize", "(", "item", ")", ":", "assert", "isinstance", "(", "item", ",", "(", "int", ",", "list", ")", ")", "if", "isinstance", "(", "item", ",", "int", ")", ":", "return", "'s'", "if", "item", ">", "1", "else", "''", "if", "isinstance"...
Nothing to see here.
[ "Nothing", "to", "see", "here", "." ]
7e80adc6ae92c6c1332d4c08473bb271fb3b6833
https://github.com/MozillaSecurity/laniakea/blob/7e80adc6ae92c6c1332d4c08473bb271fb3b6833/laniakea/core/common.py#L190-L198
4,093
MozillaSecurity/laniakea
laniakea/core/providers/packet/manager.py
PacketConfiguration.validate
def validate(self): """Perform some basic configuration validation. """ if not self.conf.get('auth_token'): raise PacketManagerException('The auth token for Packet is not defined but required.') if not self.conf.get('projects'): raise PacketManagerException('Requi...
python
def validate(self): """Perform some basic configuration validation. """ if not self.conf.get('auth_token'): raise PacketManagerException('The auth token for Packet is not defined but required.') if not self.conf.get('projects'): raise PacketManagerException('Requi...
[ "def", "validate", "(", "self", ")", ":", "if", "not", "self", ".", "conf", ".", "get", "(", "'auth_token'", ")", ":", "raise", "PacketManagerException", "(", "'The auth token for Packet is not defined but required.'", ")", "if", "not", "self", ".", "conf", ".",...
Perform some basic configuration validation.
[ "Perform", "some", "basic", "configuration", "validation", "." ]
7e80adc6ae92c6c1332d4c08473bb271fb3b6833
https://github.com/MozillaSecurity/laniakea/blob/7e80adc6ae92c6c1332d4c08473bb271fb3b6833/laniakea/core/providers/packet/manager.py#L31-L49
4,094
MozillaSecurity/laniakea
laniakea/core/providers/packet/manager.py
PacketManager.print_projects
def print_projects(self, projects): """Print method for projects. """ for project in projects: print('{}: {}'.format(project.name, project.id))
python
def print_projects(self, projects): """Print method for projects. """ for project in projects: print('{}: {}'.format(project.name, project.id))
[ "def", "print_projects", "(", "self", ",", "projects", ")", ":", "for", "project", "in", "projects", ":", "print", "(", "'{}: {}'", ".", "format", "(", "project", ".", "name", ",", "project", ".", "id", ")", ")" ]
Print method for projects.
[ "Print", "method", "for", "projects", "." ]
7e80adc6ae92c6c1332d4c08473bb271fb3b6833
https://github.com/MozillaSecurity/laniakea/blob/7e80adc6ae92c6c1332d4c08473bb271fb3b6833/laniakea/core/providers/packet/manager.py#L76-L80
4,095
MozillaSecurity/laniakea
laniakea/core/providers/packet/manager.py
PacketManager.print_operating_systems
def print_operating_systems(self, operating_systems): """Print method for operating systems. """ for _os in operating_systems: print('{}: {}'.format(_os.name, _os.slug))
python
def print_operating_systems(self, operating_systems): """Print method for operating systems. """ for _os in operating_systems: print('{}: {}'.format(_os.name, _os.slug))
[ "def", "print_operating_systems", "(", "self", ",", "operating_systems", ")", ":", "for", "_os", "in", "operating_systems", ":", "print", "(", "'{}: {}'", ".", "format", "(", "_os", ".", "name", ",", "_os", ".", "slug", ")", ")" ]
Print method for operating systems.
[ "Print", "method", "for", "operating", "systems", "." ]
7e80adc6ae92c6c1332d4c08473bb271fb3b6833
https://github.com/MozillaSecurity/laniakea/blob/7e80adc6ae92c6c1332d4c08473bb271fb3b6833/laniakea/core/providers/packet/manager.py#L89-L93
4,096
MozillaSecurity/laniakea
laniakea/core/providers/packet/manager.py
PacketManager.print_plans
def print_plans(self, plans): """Print method for plans. """ for plan in plans: print('Name: {} "{}" Price: {} USD'.format(plan.name, plan.slug, plan.pricing['hour'])) self.pprint(plan.specs) print('\n')
python
def print_plans(self, plans): """Print method for plans. """ for plan in plans: print('Name: {} "{}" Price: {} USD'.format(plan.name, plan.slug, plan.pricing['hour'])) self.pprint(plan.specs) print('\n')
[ "def", "print_plans", "(", "self", ",", "plans", ")", ":", "for", "plan", "in", "plans", ":", "print", "(", "'Name: {} \"{}\" Price: {} USD'", ".", "format", "(", "plan", ".", "name", ",", "plan", ".", "slug", ",", "plan", ".", "pricing", "[", "'hour'", ...
Print method for plans.
[ "Print", "method", "for", "plans", "." ]
7e80adc6ae92c6c1332d4c08473bb271fb3b6833
https://github.com/MozillaSecurity/laniakea/blob/7e80adc6ae92c6c1332d4c08473bb271fb3b6833/laniakea/core/providers/packet/manager.py#L102-L108
4,097
MozillaSecurity/laniakea
laniakea/core/providers/packet/manager.py
PacketManager.print_facilities
def print_facilities(self, facilities): """Print method for facilities. """ for facility in facilities: print('{} - ({}): {}'.format(facility.code, facility.name, ",".join(facility.features)))
python
def print_facilities(self, facilities): """Print method for facilities. """ for facility in facilities: print('{} - ({}): {}'.format(facility.code, facility.name, ",".join(facility.features)))
[ "def", "print_facilities", "(", "self", ",", "facilities", ")", ":", "for", "facility", "in", "facilities", ":", "print", "(", "'{} - ({}): {}'", ".", "format", "(", "facility", ".", "code", ",", "facility", ".", "name", ",", "\",\"", ".", "join", "(", "...
Print method for facilities.
[ "Print", "method", "for", "facilities", "." ]
7e80adc6ae92c6c1332d4c08473bb271fb3b6833
https://github.com/MozillaSecurity/laniakea/blob/7e80adc6ae92c6c1332d4c08473bb271fb3b6833/laniakea/core/providers/packet/manager.py#L117-L121
4,098
MozillaSecurity/laniakea
laniakea/core/providers/packet/manager.py
PacketManager.list_devices
def list_devices(self, project_id, conditions=None, params=None): """Retrieve list of devices in a project by one of more conditions. """ default_params = {'per_page': 1000} if params: default_params.update(params) data = self.api('projects/%s/devices' % project_id, p...
python
def list_devices(self, project_id, conditions=None, params=None): """Retrieve list of devices in a project by one of more conditions. """ default_params = {'per_page': 1000} if params: default_params.update(params) data = self.api('projects/%s/devices' % project_id, p...
[ "def", "list_devices", "(", "self", ",", "project_id", ",", "conditions", "=", "None", ",", "params", "=", "None", ")", ":", "default_params", "=", "{", "'per_page'", ":", "1000", "}", "if", "params", ":", "default_params", ".", "update", "(", "params", ...
Retrieve list of devices in a project by one of more conditions.
[ "Retrieve", "list", "of", "devices", "in", "a", "project", "by", "one", "of", "more", "conditions", "." ]
7e80adc6ae92c6c1332d4c08473bb271fb3b6833
https://github.com/MozillaSecurity/laniakea/blob/7e80adc6ae92c6c1332d4c08473bb271fb3b6833/laniakea/core/providers/packet/manager.py#L134-L144
4,099
MozillaSecurity/laniakea
laniakea/core/providers/packet/manager.py
PacketManager.print_devices
def print_devices(self, devices): """Print method for devices. """ for device in devices: print('ID: {} OS: {} IP: {} State: {} ({}) Tags: {}' .format(device.id, device.operating_system.slug, self.get_public_ip(dev...
python
def print_devices(self, devices): """Print method for devices. """ for device in devices: print('ID: {} OS: {} IP: {} State: {} ({}) Tags: {}' .format(device.id, device.operating_system.slug, self.get_public_ip(dev...
[ "def", "print_devices", "(", "self", ",", "devices", ")", ":", "for", "device", "in", "devices", ":", "print", "(", "'ID: {} OS: {} IP: {} State: {} ({}) Tags: {}'", ".", "format", "(", "device", ".", "id", ",", "device", ".", "operating_system", ".", "slug", ...
Print method for devices.
[ "Print", "method", "for", "devices", "." ]
7e80adc6ae92c6c1332d4c08473bb271fb3b6833
https://github.com/MozillaSecurity/laniakea/blob/7e80adc6ae92c6c1332d4c08473bb271fb3b6833/laniakea/core/providers/packet/manager.py#L146-L156