Upload dataset
Browse files- README.md +80 -32
- he/{train-00000-of-00008.parquet → test-00000-of-00003.parquet} +2 -2
- he/{train-00001-of-00008.parquet → test-00001-of-00003.parquet} +2 -2
- he/{train-00002-of-00008.parquet → test-00002-of-00003.parquet} +2 -2
- he/{train-00003-of-00008.parquet → train-00000-of-00006.parquet} +2 -2
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- he/train-00005-of-00006.parquet +3 -0
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README.md
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---
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license: cc-by-nc-sa-4.0
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task_categories:
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language:
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tags:
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size_categories:
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configs:
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---
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# IGNITE Data Toolkit (mirror)
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---
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license: cc-by-nc-sa-4.0
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task_categories:
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- image-segmentation
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- object-detection
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language:
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- en
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tags:
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- medical
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- pathology
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- histopathology
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- h-and-e
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- pd-l1
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- lung
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- nsclc
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- ignite
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size_categories:
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- n<1K
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configs:
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- config_name: he
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data_files:
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- split: train
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path: he/train-*
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- split: test
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path: he/test-*
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- config_name: nuclei
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data_files:
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- split: train
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path: nuclei/train-*
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- split: validation
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path: nuclei/validation-*
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- split: test
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path: nuclei/test-*
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- config_name: pdl1
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data_files:
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- split: train
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path: pdl1/train-*
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- split: validation
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path: pdl1/validation-*
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- split: test
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path: pdl1/test-*
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dataset_info:
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config_name: he
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features:
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- name: image
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dtype: image
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- name: mask
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dtype: image
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- name: image_with_context
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dtype: image
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- name: mask_with_context
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dtype: image
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- name: validation_fold
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dtype: string
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- name: patient_id
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dtype: int32
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- name: roi_id
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dtype: int32
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- name: name
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dtype: string
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- name: source
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dtype: string
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- name: specimen_type
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dtype: string
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- name: organ
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dtype: string
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- name: histological_subtype
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dtype: string
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- name: stain
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dtype: string
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- name: scanner
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dtype: string
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- name: shape
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dtype: string
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- name: area_mm2
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dtype: float32
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- name: original_tcga_id
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dtype: string
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splits:
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- name: train
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num_bytes: 2700615464
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num_examples: 269
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- name: test
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num_bytes: 1263135677
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num_examples: 139
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download_size: 3964084999
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dataset_size: 3963751141
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---
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# IGNITE Data Toolkit (mirror)
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he/{train-00000-of-00008.parquet → test-00000-of-00003.parquet}
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he/{train-00001-of-00008.parquet → test-00001-of-00003.parquet}
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he/{train-00002-of-00008.parquet → test-00002-of-00003.parquet}
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