Search is not available for this dataset
repo stringlengths 2 152 ⌀ | file stringlengths 15 239 | code stringlengths 0 58.4M | file_length int64 0 58.4M | avg_line_length float64 0 1.81M | max_line_length int64 0 12.7M | extension_type stringclasses 364
values |
|---|---|---|---|---|---|---|
rmsd | rmsd-master/rmsd/__init__.py | # flake8: noqa
from .calculate_rmsd import *
from .calculate_rmsd import __doc__, __version__
__all__ = [
"str_atom",
"int_atom",
"rmsd",
"kabsch_rmsd",
"kabsch_rotate",
"kabsch_fit",
"kabsch",
"kabsch_weighted",
"kabsch_weighted_fit",
"kabsch_weighted_rmsd",
"quaternion_rms... | 972 | 20.152174 | 48 | py |
rmsd | rmsd-master/rmsd/calculate_rmsd.py | #!/usr/bin/env python
__doc__ = """
Calculate Root-mean-square deviation (RMSD) between structure A and B, in XYZ
or PDB format, using transformation and rotation.
For more information, usage, example and citation read more at
https://github.com/charnley/rmsd
"""
__version__ = "1.5.1"
import argparse
import copy
imp... | 52,179 | 24.281008 | 102 | py |
rmsd | rmsd-master/tests/context.py | import subprocess
from pathlib import Path
from typing import List
RESOURCE_PATH = Path("tests/resources")
def call_main(args: List[str]) -> List[str]:
root_path = Path("./")
filename = root_path / "rmsd/calculate_rmsd.py"
cmd = ["python", f"{filename}", *args]
proc = subprocess.Popen(cmd, stdout=... | 510 | 22.227273 | 82 | py |
rmsd | rmsd-master/tests/test_args.py | import pytest
from rmsd import calculate_rmsd
def test_formats() -> None:
args_ = "filename.xyz.gz filename2.xyz.gz".split()
args = calculate_rmsd.parse_arguments(args_)
assert args.format_is_gzip
def test_legal_arguments() -> None:
args_ = "--rotation kabsch --ignore-hydrogen FILE_A FILE_B".spl... | 2,096 | 23.964286 | 93 | py |
rmsd | rmsd-master/tests/test_centroid.py | import numpy as np
import rmsd as rmsdlib
def test_centroid() -> None:
a1 = np.array([-19.658, 17.18, 25.163], dtype=float)
a2 = np.array([-20.573, 18.059, 25.88], dtype=float)
a3 = np.array([-22.018, 17.551, 26.0], dtype=float)
atms = np.asarray([a1, a2, a3])
centroid = rmsdlib.centroid(atms)
... | 443 | 25.117647 | 91 | py |
rmsd | rmsd-master/tests/test_file_reading.py | import gzip
from pathlib import Path
import numpy as np
import pytest
from context import RESOURCE_PATH
import rmsd as rmsdlib
def test_get_coordinates_pdb_hetatm() -> None:
filename = Path(RESOURCE_PATH) / "issue88" / "native.pdb"
atoms, _ = rmsdlib.get_coordinates_pdb(filename)
assert len(atoms)
... | 3,204 | 25.487603 | 79 | py |
rmsd | rmsd-master/tests/test_kabsch.py | import numpy as np
from context import RESOURCE_PATH
import rmsd as rmsdlib
def test_kabash_algorith_rmsd() -> None:
filename_1 = RESOURCE_PATH / "ci2_1.pdb"
filename_2 = RESOURCE_PATH / "ci2_2.pdb"
_, p_coord = rmsdlib.get_coordinates(filename_1, "pdb")
_, q_coord = rmsdlib.get_coordinates(filenam... | 1,269 | 27.863636 | 98 | py |
rmsd | rmsd-master/tests/test_kabsch_weighted.py | import numpy as np
from context import RESOURCE_PATH
import rmsd as rmsdlib
def test_kabash_fit_pdb() -> None:
filename_p = RESOURCE_PATH / "ci2_1r+t.pdb"
filename_q = RESOURCE_PATH / "ci2_1.pdb"
_, p_coord = rmsdlib.get_coordinates_pdb(filename_p)
_, q_coord = rmsdlib.get_coordinates_pdb(filename_... | 1,005 | 26.189189 | 83 | py |
rmsd | rmsd-master/tests/test_main.py | import copy
import numpy as np
import pytest
from context import RESOURCE_PATH, call_main
import rmsd as rmsdlib
def test_print_reflection_reorder() -> None:
# Test issue 78
filename_a = RESOURCE_PATH / "issue78" / "a.xyz"
filename_b = RESOURCE_PATH / "issue78" / "b.xyz"
# Function call
atoms_... | 4,079 | 28.352518 | 94 | py |
rmsd | rmsd-master/tests/test_quaternion.py | import numpy as np
from context import RESOURCE_PATH
import rmsd as rmsdlib
def test_quaternion_rmsd_pdb() -> None:
filename_p = RESOURCE_PATH / "ci2_1.pdb"
filename_q = RESOURCE_PATH / "ci2_2.pdb"
_, p_coord = rmsdlib.get_coordinates_pdb(filename_p)
_, q_coord = rmsdlib.get_coordinates_pdb(filenam... | 1,620 | 26.474576 | 97 | py |
rmsd | rmsd-master/tests/test_reflections.py | import copy
import numpy as np
from context import RESOURCE_PATH
import rmsd as rmsdlib
def test_reflections() -> None:
atoms = np.array(["C", "H", "H", "H", "F"])
p_coord = np.array(
[
[-0.000000, -0.000000, -0.000000],
[1.109398, -0.000000, 0.000000],
[-0.3697... | 4,710 | 24.884615 | 84 | py |
rmsd | rmsd-master/tests/test_reorder.py | import copy
import numpy as np
import rmsd as rmsdlib
def test_reorder_distance() -> None:
N = 5
atoms = np.array(["H"] * N)
p_coord = np.arange(N * 3)
p_coord = p_coord.reshape((5, 3))
q_coord = copy.deepcopy(p_coord)
np.random.seed(6)
np.random.shuffle(q_coord)
review = rmsdlib.... | 3,753 | 27.439394 | 92 | py |
rmsd | rmsd-master/tests/test_reorder_inertia.py | import numpy as np
import rmsd as rmsdlib
def test_reorder_inertia_hungarian() -> None:
# coordinates of scrambled and rotated butane
atoms = np.array(["C", "C", "C", "C", "H", "H", "H", "H", "H", "H", "H", "H", "H", "H"])
atoms_ = [rmsdlib.int_atom(atom) for atom in atoms]
atoms = np.array(atoms_)
... | 1,956 | 32.741379 | 92 | py |
rmsd | rmsd-master/tests/test_reorder_print.py | import numpy as np
from context import RESOURCE_PATH, call_main
import rmsd as rmsdlib
from rmsd import get_coordinates_xyz, get_coordinates_xyz_lines
def test_reorder_print_and_rmsd() -> None:
# Issue 93, problem with printed structure after reorder.
# - Calculate rmsd with --reorder (structure a and b)
... | 1,086 | 26.175 | 63 | py |
rmsd | rmsd-master/tests/test_reorder_qml.py | import copy
import numpy as np
import pytest
from context import RESOURCE_PATH
import rmsd as rmsdlib
qml = pytest.importorskip("qml")
def test_reorder_qml() -> None:
filename_1 = RESOURCE_PATH / "CHEMBL3039407.xyz"
p_atoms, p_coord = rmsdlib.get_coordinates_xyz(filename_1, return_atoms_as_int=True)
... | 2,962 | 26.691589 | 91 | py |
rmsd | rmsd-master/tests/test_rmsd.py | 0 | 0 | 0 | py | |
FIt-SNE | FIt-SNE-master/README.md | # FFT-accelerated Interpolation-based t-SNE (FIt-SNE)
## Introduction
t-Stochastic Neighborhood Embedding ([t-SNE](https://lvdmaaten.github.io/tsne/)) is a highly successful method for dimensionality reduction and visualization of high dimensional datasets. A popular [implementation](https://github.com/lvdmaaten/bhtsn... | 7,149 | 118.166667 | 662 | md |
FIt-SNE | FIt-SNE-master/fast_tsne.m | function [mappedX, costs, initialError] = fast_tsne(X, opts)
%FAST_TSNE Runs the C++ implementation of FMM t-SNE
%
% mappedX = fast_tsne(X, opts, initial_data)
% X - Input dataset, rows are observations and columns are
% variables
% opts - a struct with the following possible paramete... | 13,724 | 40.717325 | 132 | m |
FIt-SNE | FIt-SNE-master/fast_tsne.py | # This is a really basic function that does not do almost any sanity checks
#
# Usage example:
# import sys; sys.path.append('../FIt-SNE/')
# from fast_tsne import fast_tsne
# import numpy as np
# X = np.random.randn(1000, 50)
# Z = fast_tsne(X)
#
# Written by Dmitry Kobak
import os
import subprocess
import... | 12,556 | 36.041298 | 84 | py |
FIt-SNE | FIt-SNE-master/examples/test.m | % This should be the path to the FIt-SNE folder where fast_tsne.m is located
addpath('../')
% Generate a toy dataset
dim = 3;
sigma_0 = .0001;
cluster_num = 2;
cluster_size = 1E4;
X_clusters = [];
col_clusters = repmat(1:cluster_num,cluster_size,1);
col_clusters = col_clusters(:);
for i = 1:cluster_num
X_cluste... | 826 | 21.972222 | 93 | m |
FIt-SNE | FIt-SNE-master/src/annoylib.h | // Copyright (c) 2013 Spotify AB
//
// Licensed under the Apache License, Version 2.0 (the "License"); you may not
// use this file except in compliance with the License. You may obtain a copy of
// the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in w... | 40,303 | 29.303759 | 143 | h |
FIt-SNE | FIt-SNE-master/src/kissrandom.h | #ifndef KISSRANDOM_H
#define KISSRANDOM_H
#if defined(_MSC_VER) && _MSC_VER == 1500
typedef unsigned __int32 uint32_t;
typedef unsigned __int64 uint64_t;
#else
#include <stdint.h>
#endif
// KISS = "keep it simple, stupid", but high quality random number generator
// http://www0.cs.ucl.ac.uk/staff/d.jones/GoodPr... | 2,365 | 21.11215 | 109 | h |
FIt-SNE | FIt-SNE-master/src/nbodyfft.cpp | #include "winlibs/stdafx.h"
#include "parallel_for.h"
#include "time_code.h"
#include "nbodyfft.h"
void precompute_2d(double x_max, double x_min, double y_max, double y_min, int n_boxes, int n_interpolation_points,
kernel_type_2d kernel, double *box_lower_bounds, double *box_upper_bounds, double ... | 20,456 | 43.861842 | 126 | cpp |
FIt-SNE | FIt-SNE-master/src/nbodyfft.h | #ifndef NBODYFFT_H
#define NBODYFFT_H
#ifdef _WIN32
#include "winlibs/fftw3.h"
#else
#include <fftw3.h>
#endif
#include <complex>
using namespace std;
typedef double (*kernel_type)(double, double, double);
typedef double (*kernel_type_2d)(double, double, double, double, double);
void precompute_2d(double x_max, do... | 1,677 | 44.351351 | 125 | h |
FIt-SNE | FIt-SNE-master/src/parallel_for.h | #ifndef PARALLEL_FOR_H
#define PARALLEL_FOR_H
#include<algorithm>
#include <functional>
#include <thread>
#include <vector>
#if defined(_OPENMP)
#pragma message "Using OpenMP threading."
#define PARALLEL_FOR(nthreads,LOOP_END,O) { \
if (nthreads >1 ) { \
_Pragma("omp parallel num_threads(nthreads)")... | 1,222 | 26.177778 | 83 | h |
FIt-SNE | FIt-SNE-master/src/sptree.cpp | /*
*
* Copyright (c) 2014, Laurens van der Maaten (Delft University of Technology)
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
* 1. Redistributions of source code must retain the above ... | 13,754 | 33.216418 | 134 | cpp |
FIt-SNE | FIt-SNE-master/src/sptree.h | /*
*
* Copyright (c) 2014, Laurens van der Maaten (Delft University of Technology)
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
* 1. Redistributions of source code must retain the above ... | 4,413 | 30.304965 | 129 | h |
FIt-SNE | FIt-SNE-master/src/time_code.h | #ifndef TIME_CODE_H
#define TIME_CODE_H
#include <chrono>
#if defined(TIME_CODE)
#pragma message "Timing code"
#define INITIALIZE_TIME std::chrono::steady_clock::time_point STARTVAR;
#define START_TIME \
STARTVAR = std::chrono::stead... | 950 | 44.285714 | 133 | h |
FIt-SNE | FIt-SNE-master/src/tsne.cpp | /*
*
* Copyright (c) 2014, Laurens van der Maaten (Delft University of Technology)
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
* 1. Redistributions of source code must retain the above ... | 82,871 | 37.779598 | 231 | cpp |
FIt-SNE | FIt-SNE-master/src/tsne.h | /*
*
* Copyright (c) 2014, Laurens van der Maaten (Delft University of Technology)
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
* 1. Redistributions of source code must retain the above ... | 7,140 | 59.516949 | 144 | h |
FIt-SNE | FIt-SNE-master/src/vptree.h | /*
*
* Copyright (c) 2014, Laurens van der Maaten (Delft University of Technology)
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
* 1. Redistributions of source code must retain the above ... | 9,593 | 32.90106 | 132 | h |
FIt-SNE | FIt-SNE-master/src/progress_bar/ProgressBar.hpp | #ifndef PROGRESSBAR_PROGRESSBAR_HPP
#define PROGRESSBAR_PROGRESSBAR_HPP
#include <chrono>
#include <iostream>
class ProgressBar {
private:
unsigned int ticks = 0;
const unsigned int total_ticks;
const unsigned int bar_width;
const char complete_char = '=';
const char incomplete_char = ' ';
co... | 1,610 | 29.396226 | 109 | hpp |
FIt-SNE | FIt-SNE-master/src/winlibs/fftw3.h | /*
* Copyright (c) 2003, 2007-14 Matteo Frigo
* Copyright (c) 2003, 2007-14 Massachusetts Institute of Technology
*
* The following statement of license applies *only* to this header file,
* and *not* to the other files distributed with FFTW or derived therefrom:
*
* Redistribution and use in source and binary ... | 18,102 | 42.516827 | 93 | h |
FIt-SNE | FIt-SNE-master/src/winlibs/mman.c |
#include <windows.h>
#include <errno.h>
#include <io.h>
#include "mman.h"
#ifndef FILE_MAP_EXECUTE
#define FILE_MAP_EXECUTE 0x0020
#endif /* FILE_MAP_EXECUTE */
static int __map_mman_error(const DWORD err, const int deferr)
{
if (err == 0)
return 0;
//TODO: implement
return err;
}
static DWO... | 4,644 | 21.658537 | 88 | c |
FIt-SNE | FIt-SNE-master/src/winlibs/mman.h | /*
* sys/mman.h
* mman-win32
*/
#ifndef _SYS_MMAN_H_
#define _SYS_MMAN_H_
#ifndef _WIN32_WINNT // Allow use of features specific to Windows XP or later.
#define _WIN32_WINNT 0x0501 // Change this to the appropriate value to target other versions of Windows.
#endif
/* All the headers incl... | 2,083 | 24.108434 | 109 | h |
FIt-SNE | FIt-SNE-master/src/winlibs/stdafx.cpp | // stdafx.cpp : source file that includes just the standard includes
// FItSNE.pch will be the pre-compiled header
// stdafx.obj will contain the pre-compiled type information
#include "stdafx.h"
// TODO: reference any additional headers you need in STDAFX.H
// and not in this file
| 285 | 30.777778 | 68 | cpp |
FIt-SNE | FIt-SNE-master/src/winlibs/stdafx.h | // stdafx.h : include file for standard system include files,
// or project specific include files that are used frequently, but
// are changed infrequently
//
#pragma once
#ifdef _WIN32
#define _CRT_SECURE_NO_WARNINGS
#define _CRT_SECURE_NO_DEPRECATE
#include "targetver.h"
#include <stdio.h>
#include <tchar.h>
#... | 327 | 15.4 | 66 | h |
FIt-SNE | FIt-SNE-master/src/winlibs/targetver.h | #pragma once
// Including SDKDDKVer.h defines the highest available Windows platform.
// If you wish to build your application for a previous Windows platform, include WinSDKVer.h and
// set the _WIN32_WINNT macro to the platform you wish to support before including SDKDDKVer.h.
#include <SDKDDKVer.h>
| 306 | 33.111111 | 97 | h |
FIt-SNE | FIt-SNE-master/src/winlibs/unistd.h | #ifndef _UNISTD_H
#define _UNISTD_H 1
/* This is intended as a drop-in replacement for unistd.h on Windows.
* Please add functionality as neeeded.
* https://stackoverflow.com/a/826027/1202830
*/
#include <stdlib.h>
#include <io.h>
//#include <getopt.h> /* getopt at: https://gist.github.com/ashelly/7776712 */
#i... | 1,788 | 30.946429 | 240 | h |
FIt-SNE | FIt-SNE-master/src/winlibs/fftw/fftw3.f | INTEGER FFTW_R2HC
PARAMETER (FFTW_R2HC=0)
INTEGER FFTW_HC2R
PARAMETER (FFTW_HC2R=1)
INTEGER FFTW_DHT
PARAMETER (FFTW_DHT=2)
INTEGER FFTW_REDFT00
PARAMETER (FFTW_REDFT00=3)
INTEGER FFTW_REDFT01
PARAMETER (FFTW_REDFT01=4)
INTEGER FFTW_REDFT10
PARAMET... | 2,447 | 32.534247 | 52 | f |
FIt-SNE | FIt-SNE-master/src/winlibs/fftw/fftw3.h | /*
* Copyright (c) 2003, 2007-14 Matteo Frigo
* Copyright (c) 2003, 2007-14 Massachusetts Institute of Technology
*
* The following statement of license applies *only* to this header file,
* and *not* to the other files distributed with FFTW or derived therefrom:
*
* Redistribution and use in source and binary ... | 18,102 | 42.516827 | 93 | h |
FIt-SNE | FIt-SNE-master/src/winlibs/fftw/ffwt_license-and-copyright.html | <!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
<html>
<!-- This manual is for FFTW
(version 3.3.8, 24 May 2018).
Copyright (C) 2003 Matteo Frigo.
Copyright (C) 2003 Massachusetts Institute of Technology.
Permission is granted to make and distribute verbatim cop... | 5,796 | 45.376 | 436 | html |
octomap | octomap-master/.travis.yml | language: cpp
sudo: required
dist: bionic
compiler:
- gcc
- clang
before_install:
- sudo apt-get update -qq
- sudo apt-get install -qq libqglviewer-dev-qt5
before_script:
script: ./scripts/travis_build_jobs.sh $VARIANT
env:
- VARIANT=dist
- VARIANT=components
matrix:
exclude:
- compiler: clang
e... | 344 | 16.25 | 49 | yml |
octomap | octomap-master/README.md | OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees.
===========================================================================
http://octomap.github.io
Originally developed by Kai M. Wurm and Armin Hornung, University of Freiburg, Copyright (C) 2009-2014.
Currently maintained by [Armin Hornun... | 2,131 | 33.387097 | 114 | md |
octomap | octomap-master/.github/workflows/industrial_ci_action.yml | # This config uses industrial_ci (https://github.com/ros-industrial/industrial_ci.git).
# For troubleshooting, see readme (https://github.com/ros-industrial/industrial_ci/blob/master/README.rst)
name: CI
# This determines when this workflow is run
on: [push, pull_request] # on all pushes and PRs
jobs:
CI:
stra... | 1,037 | 31.4375 | 106 | yml |
octomap | octomap-master/dynamicEDT3D/doxygen.h |
/**
* \namespace dynamicEDT3D Namespace of the dynamicEDT3D library
*
*/
/** \mainpage dynamicEDT3D
\section intro_sec Introduction
The <a href="http://octomap.sourceforge.net/">dynamicEDT3D library</a> implements an inrementally updatable Euclidean distance transform (EDT) in 3D. It comes with a wrapper to... | 1,923 | 39.083333 | 304 | h |
octomap | octomap-master/dynamicEDT3D/include/dynamicEDT3D/bucketedqueue.h | /**
* dynamicEDT3D:
* A library for incrementally updatable Euclidean distance transforms in 3D.
* @author C. Sprunk, B. Lau, W. Burgard, University of Freiburg, Copyright (C) 2011.
* @see http://octomap.sourceforge.net/
* License: New BSD License
*/
/*
* Copyright (c) 2011-2012, C. Sprunk, B. Lau, W. Burgard, Univer... | 3,237 | 34.582418 | 94 | h |
octomap | octomap-master/dynamicEDT3D/include/dynamicEDT3D/bucketedqueue.hxx | /**
* dynamicEDT3D:
* A library for incrementally updatable Euclidean distance transforms in 3D.
* @author C. Sprunk, B. Lau, W. Burgard, University of Freiburg, Copyright (C) 2011.
* @see http://octomap.sourceforge.net/
* License: New BSD License
*/
/*
* Copyright (c) 2011-2012, C. Sprunk, B. Lau, W. Burgard, Univer... | 2,656 | 33.960526 | 86 | hxx |
octomap | octomap-master/dynamicEDT3D/include/dynamicEDT3D/dynamicEDT3D.h | /**
* dynamicEDT3D:
* A library for incrementally updatable Euclidean distance transforms in 3D.
* @author C. Sprunk, B. Lau, W. Burgard, University of Freiburg, Copyright (C) 2011.
* @see http://octomap.sourceforge.net/
* License: New BSD License
*/
/*
* Copyright (c) 2011-2012, C. Sprunk, B. Lau, W. Burgard, Univer... | 5,228 | 33.401316 | 99 | h |
octomap | octomap-master/dynamicEDT3D/include/dynamicEDT3D/dynamicEDTOctomap.h | /**
* dynamicEDT3D:
* A library for incrementally updatable Euclidean distance transforms in 3D.
* @author C. Sprunk, B. Lau, W. Burgard, University of Freiburg, Copyright (C) 2011.
* @see http://octomap.sourceforge.net/
* License: New BSD License
*/
/*
* Copyright (c) 2011-2012, C. Sprunk, B. Lau, W. Burgard, Univer... | 7,002 | 52.458015 | 303 | h |
octomap | octomap-master/dynamicEDT3D/include/dynamicEDT3D/dynamicEDTOctomap.hxx | /**
* dynamicEDT3D:
* A library for incrementally updatable Euclidean distance transforms in 3D.
* @author C. Sprunk, B. Lau, W. Burgard, University of Freiburg, Copyright (C) 2011.
* @see http://octomap.sourceforge.net/
* License: New BSD License
*/
/*
* Copyright (c) 2011-2012, C. Sprunk, B. Lau, W. Burgard, Univer... | 11,291 | 32.309735 | 163 | hxx |
octomap | octomap-master/dynamicEDT3D/include/dynamicEDT3D/point.h | /**
* dynamicEDT3D:
* A library for incrementally updatable Euclidean distance transforms in 3D.
* @author C. Sprunk, B. Lau, W. Burgard, University of Freiburg, Copyright (C) 2011.
* @see http://octomap.sourceforge.net/
* License: New BSD License
*/
/*
* Copyright (c) 2011-2012, C. Sprunk, B. Lau, W. Burgard, Univer... | 2,379 | 37.387097 | 84 | h |
octomap | octomap-master/dynamicEDT3D/src/dynamicEDT3D.cpp | /**
* dynamicEDT3D:
* A library for incrementally updatable Euclidean distance transforms in 3D.
* @author C. Sprunk, B. Lau, W. Burgard, University of Freiburg, Copyright (C) 2011.
* @see http://octomap.sourceforge.net/
* License: New BSD License
*/
/*
* Copyright (c) 2011-2012, C. Sprunk, B. Lau, W. Burgard, Univer... | 16,104 | 26.204392 | 112 | cpp |
octomap | octomap-master/dynamicEDT3D/src/examples/exampleEDT3D.cpp | /**
* dynamicEDT3D:
* A library for incrementally updatable Euclidean distance transforms in 3D.
* @author C. Sprunk, B. Lau, W. Burgard, University of Freiburg, Copyright (C) 2011.
* @see http://octomap.sourceforge.net/
* License: New BSD License
*/
/*
* Copyright (c) 2011-2012, C. Sprunk, B. Lau, W. Burgard, Univer... | 5,086 | 36.404412 | 108 | cpp |
octomap | octomap-master/dynamicEDT3D/src/examples/exampleEDTOctomap.cpp | /**
* dynamicEDT3D:
* A library for incrementally updatable Euclidean distance transforms in 3D.
* @author C. Sprunk, B. Lau, W. Burgard, University of Freiburg, Copyright (C) 2011.
* @see http://octomap.sourceforge.net/
* License: New BSD License
*/
/*
* Copyright (c) 2011-2012, C. Sprunk, B. Lau, W. Burgard, Univer... | 4,039 | 38.607843 | 152 | cpp |
octomap | octomap-master/dynamicEDT3D/src/examples/exampleEDTOctomapStamped.cpp | /**
* dynamicEDT3D:
* A library for incrementally updatable Euclidean distance transforms in 3D.
* @author C. Sprunk, B. Lau, W. Burgard, University of Freiburg, Copyright (C) 2011.
* @see http://octomap.sourceforge.net/
* License: New BSD License
*/
/*
* Copyright (c) 2011-2012, C. Sprunk, B. Lau, W. Burgard, Univer... | 4,080 | 38.621359 | 152 | cpp |
octomap | octomap-master/octomap/README.md | Octomap - A probabilistic, flexible, and compact 3D mapping library for robotic systems
=======================================================================================
Authors: Kai M. Wurm and Armin Hornung, University of Freiburg, Copyright (C) 2009-2013.
https://octomap.github.io
See the [list of contributo... | 5,700 | 32.733728 | 118 | md |
octomap | octomap-master/octomap/doxygen.h |
/**
* \namespace octomath Namespace of the math library in OctoMap
*
*/
/**
* \namespace octomap Namespace the OctoMap library and visualization tools
*
*/
/** \mainpage OctoMap
\section intro_sec Introduction
The <a href="https://octomap.github.io/">OctoMap library</a>
implements a 3D occupancy grid... | 4,441 | 38.309735 | 228 | h |
octomap | octomap-master/octomap/include/octomap/AbstractOcTree.h | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2009-2013, K.M. Wurm and A. Hornung, University of Freiburg
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modificat... | 6,748 | 39.90303 | 128 | h |
octomap | octomap-master/octomap/include/octomap/AbstractOccupancyOcTree.h | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2009-2013, K.M. Wurm and A. Hornung, University of Freiburg
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modificat... | 10,721 | 43.305785 | 108 | h |
octomap | octomap-master/octomap/include/octomap/ColorOcTree.h | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2009-2013, K.M. Wurm and A. Hornung, University of Freiburg
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modificat... | 7,563 | 35.365385 | 90 | h |
octomap | octomap-master/octomap/include/octomap/CountingOcTree.h | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2009-2013, K.M. Wurm and A. Hornung, University of Freiburg
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modificat... | 4,512 | 35.395161 | 84 | h |
octomap | octomap-master/octomap/include/octomap/MCTables.h | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2013, F-M. De Rainville, P. Bourke
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provid... | 19,345 | 53.342697 | 78 | h |
octomap | octomap-master/octomap/include/octomap/MapCollection.h | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2009-2013, K.M. Wurm and A. Hornung, University of Freiburg
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modificat... | 3,897 | 36.480769 | 110 | h |
octomap | octomap-master/octomap/include/octomap/MapCollection.hxx | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2009-2013, K.M. Wurm and A. Hornung, University of Freiburg
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modificat... | 11,272 | 33.057402 | 113 | hxx |
octomap | octomap-master/octomap/include/octomap/MapNode.h | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2009-2013, K.M. Wurm and A. Hornung, University of Freiburg
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modificat... | 2,880 | 33.710843 | 78 | h |
octomap | octomap-master/octomap/include/octomap/MapNode.hxx | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2009-2013, K.M. Wurm and A. Hornung, University of Freiburg
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modificat... | 3,389 | 32.235294 | 89 | hxx |
octomap | octomap-master/octomap/include/octomap/OcTree.h | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2009-2013, K.M. Wurm and A. Hornung, University of Freiburg
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modificat... | 3,597 | 34.27451 | 80 | h |
octomap | octomap-master/octomap/include/octomap/OcTreeBase.h | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2009-2013, K.M. Wurm and A. Hornung, University of Freiburg
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modificat... | 2,391 | 40.241379 | 86 | h |
octomap | octomap-master/octomap/include/octomap/OcTreeBaseImpl.h | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2009-2013, K.M. Wurm and A. Hornung, University of Freiburg
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modificat... | 23,307 | 39.465278 | 123 | h |
octomap | octomap-master/octomap/include/octomap/OcTreeBaseImpl.hxx | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2009-2013, K.M. Wurm and A. Hornung, University of Freiburg
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modificat... | 32,739 | 28.232143 | 164 | hxx |
octomap | octomap-master/octomap/include/octomap/OcTreeDataNode.h | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2009-2013, K.M. Wurm and A. Hornung, University of Freiburg
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modificat... | 4,866 | 34.268116 | 84 | h |
octomap | octomap-master/octomap/include/octomap/OcTreeDataNode.hxx | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2009-2013, K.M. Wurm and A. Hornung, University of Freiburg
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modificat... | 4,485 | 30.815603 | 99 | hxx |
octomap | octomap-master/octomap/include/octomap/OcTreeIterator.hxx | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2009-2013, K.M. Wurm and A. Hornung, University of Freiburg
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modificat... | 17,543 | 36.810345 | 133 | hxx |
octomap | octomap-master/octomap/include/octomap/OcTreeKey.h | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2009-2013, K.M. Wurm and A. Hornung, University of Freiburg
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modificat... | 7,910 | 31.422131 | 96 | h |
octomap | octomap-master/octomap/include/octomap/OcTreeNode.h | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2009-2013, K.M. Wurm and A. Hornung, University of Freiburg
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modificat... | 3,621 | 35.959184 | 83 | h |
octomap | octomap-master/octomap/include/octomap/OcTreeStamped.h | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2009-2013, K.M. Wurm and A. Hornung, University of Freiburg
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modificat... | 4,655 | 35.093023 | 98 | h |
octomap | octomap-master/octomap/include/octomap/OccupancyOcTreeBase.h | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2009-2013, K.M. Wurm and A. Hornung, University of Freiburg
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modificat... | 25,146 | 48.404715 | 198 | h |
octomap | octomap-master/octomap/include/octomap/OccupancyOcTreeBase.hxx | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2009-2013, K.M. Wurm and A. Hornung, University of Freiburg
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modificat... | 40,621 | 34.790308 | 148 | hxx |
octomap | octomap-master/octomap/include/octomap/Pointcloud.h | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2009-2013, K.M. Wurm and A. Hornung, University of Freiburg
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modificat... | 4,430 | 33.889764 | 83 | h |
octomap | octomap-master/octomap/include/octomap/ScanGraph.h | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2009-2013, K.M. Wurm and A. Hornung, University of Freiburg
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modificat... | 7,500 | 31.331897 | 100 | h |
octomap | octomap-master/octomap/include/octomap/octomap.h | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2009-2013, K.M. Wurm and A. Hornung, University of Freiburg
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modificat... | 1,875 | 47.102564 | 78 | h |
octomap | octomap-master/octomap/include/octomap/octomap_deprecated.h | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2009-2013, K.M. Wurm and A. Hornung, University of Freiburg
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modificat... | 2,258 | 44.18 | 90 | h |
octomap | octomap-master/octomap/include/octomap/octomap_timing.h | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2009-2013, K.M. Wurm and A. Hornung, University of Freiburg
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modificat... | 2,205 | 39.109091 | 78 | h |
octomap | octomap-master/octomap/include/octomap/octomap_types.h | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2009-2013, K.M. Wurm and A. Hornung, University of Freiburg
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modificat... | 3,315 | 39.439024 | 110 | h |
octomap | octomap-master/octomap/include/octomap/octomap_utils.h | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2009-2013, K.M. Wurm and A. Hornung, University of Freiburg
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modificat... | 2,183 | 38 | 78 | h |
octomap | octomap-master/octomap/include/octomap/math/Pose6D.h | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2009-2013, K.M. Wurm and A. Hornung, University of Freiburg
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modificat... | 6,525 | 30.52657 | 86 | h |
octomap | octomap-master/octomap/include/octomap/math/Quaternion.h | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2009-2013, K.M. Wurm and A. Hornung, University of Freiburg
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modificat... | 6,132 | 29.063725 | 80 | h |
octomap | octomap-master/octomap/include/octomap/math/Utils.h | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2009-2013, K.M. Wurm and A. Hornung, University of Freiburg
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modificat... | 2,106 | 35.964912 | 78 | h |
octomap | octomap-master/octomap/include/octomap/math/Vector3.h | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2009-2013, K.M. Wurm and A. Hornung, University of Freiburg
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modificat... | 8,332 | 24.48318 | 110 | h |
octomap | octomap-master/octomap/src/AbstractOcTree.cpp | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2009-2013, K.M. Wurm and A. Hornung, University of Freiburg
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modificat... | 6,655 | 30.396226 | 137 | cpp |
octomap | octomap-master/octomap/src/AbstractOccupancyOcTree.cpp | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2009-2013, K.M. Wurm and A. Hornung, University of Freiburg
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modificat... | 6,509 | 34.769231 | 135 | cpp |
octomap | octomap-master/octomap/src/ColorOcTree.cpp | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2009-2013, K.M. Wurm and A. Hornung, University of Freiburg
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modificat... | 9,212 | 34.298851 | 144 | cpp |
octomap | octomap-master/octomap/src/CountingOcTree.cpp | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2009-2013, K.M. Wurm and A. Hornung, University of Freiburg
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modificat... | 4,635 | 33.857143 | 112 | cpp |
octomap | octomap-master/octomap/src/OcTree.cpp | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2009-2013, K.M. Wurm and A. Hornung, University of Freiburg
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modificat... | 2,209 | 39.181818 | 95 | cpp |
octomap | octomap-master/octomap/src/OcTreeNode.cpp | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2009-2013, K.M. Wurm and A. Hornung, University of Freiburg
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modificat... | 3,180 | 31.459184 | 105 | cpp |
octomap | octomap-master/octomap/src/OcTreeStamped.cpp | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2009-2013, K.M. Wurm and A. Hornung, University of Freiburg
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modificat... | 3,044 | 40.712329 | 93 | cpp |
octomap | octomap-master/octomap/src/Pointcloud.cpp | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2009-2013, K.M. Wurm and A. Hornung, University of Freiburg
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modificat... | 9,606 | 26.765896 | 105 | cpp |
octomap | octomap-master/octomap/src/ScanGraph.cpp | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2009-2013, K.M. Wurm and A. Hornung, University of Freiburg
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modificat... | 18,219 | 28.105431 | 123 | cpp |
octomap | octomap-master/octomap/src/binvox2bt.cpp | /*
* OctoMap - An Efficient Probabilistic 3D Mapping Framework Based on Octrees
* https://octomap.github.io/
*
* Copyright (c) 2009-2013, K.M. Wurm and A. Hornung, University of Freiburg
* All rights reserved.
* License: New BSD
*
* Redistribution and use in source and binary forms, with or without
* modificat... | 11,019 | 34.207668 | 118 | cpp |