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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/dense_heads/sabl_retina_head.py
import numpy as np import torch import torch.nn as nn from mmcv.cnn import ConvModule, bias_init_with_prob, normal_init from mmcv.runner import force_fp32 from mmdet.core import (build_anchor_generator, build_assigner, build_bbox_coder, build_sampler, images_to_levels, m...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/dense_heads/fovea_head.py
import torch import torch.nn as nn from mmcv.cnn import ConvModule, normal_init from mmcv.ops import DeformConv2d from mmdet.core import multi_apply, multiclass_nms from ..builder import HEADS from .anchor_free_head import AnchorFreeHead INF = 1e8 class FeatureAlign(nn.Module): def __init__(self, ...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/dense_heads/dense_test_mixins.py
from inspect import signature import torch from mmdet.core import bbox2result, bbox_mapping_back, multiclass_nms class BBoxTestMixin(object): """Mixin class for test time augmentation of bboxes.""" def merge_aug_bboxes(self, aug_bboxes, aug_scores, img_metas): """Merge augmented detection bboxes an...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/dense_heads/transformer_head.py
import torch import torch.nn as nn import torch.nn.functional as F from mmcv.cnn import Conv2d, Linear, build_activation_layer from mmcv.runner import force_fp32 from mmdet.core import (bbox_cxcywh_to_xyxy, bbox_xyxy_to_cxcywh, build_assigner, build_sampler, multi_apply, ...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/utils/gaussian_target.py
from math import sqrt import torch def gaussian2D(radius, sigma=1, dtype=torch.float32, device='cpu'): """Generate 2D gaussian kernel. Args: radius (int): Radius of gaussian kernel. sigma (int): Sigma of gaussian function. Default: 1. dtype (torch.dtype): Dtype of gaussian tensor. De...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/utils/res_layer.py
from mmcv.cnn import build_conv_layer, build_norm_layer from torch import nn as nn class ResLayer(nn.Sequential): """ResLayer to build ResNet style backbone. Args: block (nn.Module): block used to build ResLayer. inplanes (int): inplanes of block. planes (int): planes of block. ...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/utils/transformer.py
import torch import torch.nn as nn from mmcv.cnn import (Linear, build_activation_layer, build_norm_layer, xavier_init) from .builder import TRANSFORMER class MultiheadAttention(nn.Module): """A warpper for torch.nn.MultiheadAttention. This module implements MultiheadAttention with res...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/utils/positional_encoding.py
import math import torch import torch.nn as nn from mmcv.cnn import uniform_init from .builder import POSITIONAL_ENCODING @POSITIONAL_ENCODING.register_module() class SinePositionalEncoding(nn.Module): """Position encoding with sine and cosine functions. See `End-to-End Object Detection with Transformers ...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/roi_heads/standard_roi_head.py
import torch from mmdet.core import bbox2result, bbox2roi, build_assigner, build_sampler from ..builder import HEADS, build_head, build_roi_extractor from .base_roi_head import BaseRoIHead from .test_mixins import BBoxTestMixin, MaskTestMixin @HEADS.register_module() class StandardRoIHead(BaseRoIHead, BBoxTestMixin,...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/roi_heads/grid_roi_head.py
import torch from mmdet.core import bbox2result, bbox2roi from ..builder import HEADS, build_head, build_roi_extractor from .standard_roi_head import StandardRoIHead @HEADS.register_module() class GridRoIHead(StandardRoIHead): """Grid roi head for Grid R-CNN. https://arxiv.org/abs/1811.12030 """ de...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/roi_heads/scnet_roi_head.py
import torch import torch.nn.functional as F from mmdet.core import (bbox2result, bbox2roi, bbox_mapping, merge_aug_bboxes, merge_aug_masks, multiclass_nms) from ..builder import HEADS, build_head, build_roi_extractor from .cascade_roi_head import CascadeRoIHead @HEADS.register_module() class...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/roi_heads/sparse_roi_head.py
import torch from mmdet.core import bbox2result, bbox2roi, bbox_xyxy_to_cxcywh from mmdet.core.bbox.samplers import PseudoSampler from ..builder import HEADS from .cascade_roi_head import CascadeRoIHead @HEADS.register_module() class SparseRoIHead(CascadeRoIHead): r"""The RoIHead for `Sparse R-CNN: End-to-End Ob...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/roi_heads/cascade_roi_head.py
import torch import torch.nn as nn from mmdet.core import (bbox2result, bbox2roi, bbox_mapping, build_assigner, build_sampler, merge_aug_bboxes, merge_aug_masks, multiclass_nms) from ..builder import HEADS, build_head, build_roi_extractor from .base_roi_head import BaseR...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/roi_heads/trident_roi_head.py
import torch from mmcv.ops import batched_nms from mmdet.core import (bbox2result, bbox2roi, bbox_mapping, merge_aug_bboxes, multiclass_nms) from mmdet.models.roi_heads.standard_roi_head import StandardRoIHead from ..builder import HEADS @HEADS.register_module() class TridentRoIHead(StandardR...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/roi_heads/dynamic_roi_head.py
import numpy as np import torch from mmdet.core import bbox2roi from mmdet.models.losses import SmoothL1Loss from ..builder import HEADS from .standard_roi_head import StandardRoIHead EPS = 1e-15 @HEADS.register_module() class DynamicRoIHead(StandardRoIHead): """RoI head for `Dynamic R-CNN <https://arxiv.org/ab...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/roi_heads/point_rend_roi_head.py
# Modified from https://github.com/facebookresearch/detectron2/tree/master/projects/PointRend # noqa import torch import torch.nn.functional as F from mmcv.ops import point_sample, rel_roi_point_to_rel_img_point from mmdet.core import bbox2roi, bbox_mapping, merge_aug_masks from .. import builder from ..builder impo...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/roi_heads/base_roi_head.py
from abc import ABCMeta, abstractmethod import torch.nn as nn from ..builder import build_shared_head class BaseRoIHead(nn.Module, metaclass=ABCMeta): """Base class for RoIHeads.""" def __init__(self, bbox_roi_extractor=None, bbox_head=None, mask_roi_extra...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/roi_heads/mask_scoring_roi_head.py
import torch from mmdet.core import bbox2roi from ..builder import HEADS, build_head from .standard_roi_head import StandardRoIHead @HEADS.register_module() class MaskScoringRoIHead(StandardRoIHead): """Mask Scoring RoIHead for Mask Scoring RCNN. https://arxiv.org/abs/1903.00241 """ def __init__(se...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/roi_heads/htc_roi_head.py
import torch import torch.nn.functional as F from mmdet.core import (bbox2result, bbox2roi, bbox_mapping, merge_aug_bboxes, merge_aug_masks, multiclass_nms) from ..builder import HEADS, build_head, build_roi_extractor from .cascade_roi_head import CascadeRoIHead @HEADS.register_module() class...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/roi_heads/test_mixins.py
import logging import sys import torch from mmdet.core import (bbox2roi, bbox_mapping, merge_aug_bboxes, merge_aug_masks, multiclass_nms) logger = logging.getLogger(__name__) if sys.version_info >= (3, 7): from mmdet.utils.contextmanagers import completed class BBoxTestMixin(object): ...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/roi_heads/roi_extractors/base_roi_extractor.py
from abc import ABCMeta, abstractmethod import torch import torch.nn as nn from mmcv import ops class BaseRoIExtractor(nn.Module, metaclass=ABCMeta): """Base class for RoI extractor. Args: roi_layer (dict): Specify RoI layer type and arguments. out_channels (int): Output channels of RoI laye...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/roi_heads/roi_extractors/single_level_roi_extractor.py
import torch from mmcv.runner import force_fp32 from mmdet.models.builder import ROI_EXTRACTORS from .base_roi_extractor import BaseRoIExtractor @ROI_EXTRACTORS.register_module() class SingleRoIExtractor(BaseRoIExtractor): """Extract RoI features from a single level feature map. If there are multiple input ...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/roi_heads/bbox_heads/bbox_head.py
import torch import torch.nn as nn import torch.nn.functional as F from mmcv.runner import auto_fp16, force_fp32 from torch.nn.modules.utils import _pair from mmdet.core import build_bbox_coder, multi_apply, multiclass_nms from mmdet.models.builder import HEADS, build_loss from mmdet.models.losses import accuracy @H...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/roi_heads/bbox_heads/sabl_head.py
import numpy as np import torch import torch.nn as nn import torch.nn.functional as F from mmcv.cnn import ConvModule, kaiming_init, normal_init, xavier_init from mmcv.runner import force_fp32 from mmdet.core import build_bbox_coder, multi_apply, multiclass_nms from mmdet.models.builder import HEADS, build_loss from m...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/roi_heads/bbox_heads/dii_head.py
import torch import torch.nn as nn from mmcv.cnn import (bias_init_with_prob, build_activation_layer, build_norm_layer) from mmcv.runner import auto_fp16, force_fp32 from mmdet.core import multi_apply from mmdet.models.builder import HEADS, build_loss from mmdet.models.dense_heads.atss_head impor...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/roi_heads/bbox_heads/convfc_bbox_head.py
import torch.nn as nn from mmcv.cnn import ConvModule from mmdet.models.builder import HEADS from .bbox_head import BBoxHead @HEADS.register_module() class ConvFCBBoxHead(BBoxHead): r"""More general bbox head, with shared conv and fc layers and two optional separated branches. .. code-block:: none ...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/roi_heads/bbox_heads/double_bbox_head.py
import torch.nn as nn from mmcv.cnn import ConvModule, normal_init, xavier_init from mmdet.models.backbones.resnet import Bottleneck from mmdet.models.builder import HEADS from .bbox_head import BBoxHead class BasicResBlock(nn.Module): """Basic residual block. This block is a little different from the block...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/roi_heads/shared_heads/res_layer.py
import torch.nn as nn from mmcv.cnn import constant_init, kaiming_init from mmcv.runner import auto_fp16, load_checkpoint from mmdet.models.backbones import ResNet from mmdet.models.builder import SHARED_HEADS from mmdet.models.utils import ResLayer as _ResLayer from mmdet.utils import get_root_logger @SHARED_HEADS....
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/roi_heads/mask_heads/grid_head.py
import numpy as np import torch import torch.nn as nn import torch.nn.functional as F from mmcv.cnn import ConvModule, kaiming_init, normal_init from mmdet.models.builder import HEADS, build_loss @HEADS.register_module() class GridHead(nn.Module): def __init__(self, grid_points=9, ...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/roi_heads/mask_heads/coarse_mask_head.py
import torch.nn as nn from mmcv.cnn import ConvModule, Linear, constant_init, xavier_init from mmcv.runner import auto_fp16 from mmdet.models.builder import HEADS from .fcn_mask_head import FCNMaskHead @HEADS.register_module() class CoarseMaskHead(FCNMaskHead): """Coarse mask head used in PointRend. Compare...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/roi_heads/mask_heads/maskiou_head.py
import numpy as np import torch import torch.nn as nn from mmcv.cnn import Conv2d, Linear, MaxPool2d, kaiming_init, normal_init from mmcv.runner import force_fp32 from torch.nn.modules.utils import _pair from mmdet.models.builder import HEADS, build_loss @HEADS.register_module() class MaskIoUHead(nn.Module): """...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/roi_heads/mask_heads/feature_relay_head.py
import torch.nn as nn from mmcv.cnn import kaiming_init from mmcv.runner import auto_fp16 from mmdet.models.builder import HEADS @HEADS.register_module() class FeatureRelayHead(nn.Module): """Feature Relay Head used in `SCNet <https://arxiv.org/abs/2012.10150>`_. Args: in_channels (int, optional): n...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/roi_heads/mask_heads/global_context_head.py
import torch.nn as nn from mmcv.cnn import ConvModule from mmcv.runner import auto_fp16, force_fp32 from mmdet.models.builder import HEADS from mmdet.models.utils import ResLayer, SimplifiedBasicBlock @HEADS.register_module() class GlobalContextHead(nn.Module): """Global context head used in `SCNet <https://arxi...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/roi_heads/mask_heads/fcn_mask_head.py
import numpy as np import torch import torch.nn as nn import torch.nn.functional as F from mmcv.cnn import Conv2d, ConvModule, build_upsample_layer from mmcv.ops.carafe import CARAFEPack from mmcv.runner import auto_fp16, force_fp32 from torch.nn.modules.utils import _pair from mmdet.core import mask_target from mmdet...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/roi_heads/mask_heads/fused_semantic_head.py
import torch.nn as nn import torch.nn.functional as F from mmcv.cnn import ConvModule, kaiming_init from mmcv.runner import auto_fp16, force_fp32 from mmdet.models.builder import HEADS @HEADS.register_module() class FusedSemanticHead(nn.Module): r"""Multi-level fused semantic segmentation head. .. code-bloc...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/roi_heads/mask_heads/mask_point_head.py
# Modified from https://github.com/facebookresearch/detectron2/tree/master/projects/PointRend/point_head/point_head.py # noqa import torch import torch.nn as nn from mmcv.cnn import ConvModule, normal_init from mmcv.ops import point_sample, rel_roi_point_to_rel_img_point from mmdet.models.builder import HEADS, build...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/losses/ghm_loss.py
import torch import torch.nn as nn import torch.nn.functional as F from ..builder import LOSSES def _expand_onehot_labels(labels, label_weights, label_channels): bin_labels = labels.new_full((labels.size(0), label_channels), 0) inds = torch.nonzero( (labels >= 0) & (labels < label_channels), as_tuple...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/losses/mse_loss.py
import torch.nn as nn import torch.nn.functional as F from ..builder import LOSSES from .utils import weighted_loss @weighted_loss def mse_loss(pred, target): """Warpper of mse loss.""" return F.mse_loss(pred, target, reduction='none') @LOSSES.register_module() class MSELoss(nn.Module): """MSELoss. ...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/losses/pisa_loss.py
import mmcv import torch from mmdet.core import bbox_overlaps @mmcv.jit(derivate=True, coderize=True) def isr_p(cls_score, bbox_pred, bbox_targets, rois, sampling_results, loss_cls, bbox_coder, k=2, bias=0, num_class=80): "...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/losses/balanced_l1_loss.py
import mmcv import numpy as np import torch import torch.nn as nn from ..builder import LOSSES from .utils import weighted_loss @mmcv.jit(derivate=True, coderize=True) @weighted_loss def balanced_l1_loss(pred, target, beta=1.0, alpha=0.5, ...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/losses/iou_loss.py
import math import mmcv import torch import torch.nn as nn from mmdet.core import bbox_overlaps from ..builder import LOSSES from .utils import weighted_loss @mmcv.jit(derivate=True, coderize=True) @weighted_loss def iou_loss(pred, target, linear=False, eps=1e-6): """IoU loss. Computing the IoU loss betwee...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/losses/smooth_l1_loss.py
import mmcv import torch import torch.nn as nn from ..builder import LOSSES from .utils import weighted_loss @mmcv.jit(derivate=True, coderize=True) @weighted_loss def smooth_l1_loss(pred, target, beta=1.0): """Smooth L1 loss. Args: pred (torch.Tensor): The prediction. target (torch.Tensor):...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/losses/gfocal_loss.py
import mmcv import torch.nn as nn import torch.nn.functional as F from ..builder import LOSSES from .utils import weighted_loss @mmcv.jit(derivate=True, coderize=True) @weighted_loss def quality_focal_loss(pred, target, beta=2.0): r"""Quality Focal Loss (QFL) is from `Generalized Focal Loss: Learning Qualifi...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/losses/varifocal_loss.py
import mmcv import torch.nn as nn import torch.nn.functional as F from ..builder import LOSSES from .utils import weight_reduce_loss @mmcv.jit(derivate=True, coderize=True) def varifocal_loss(pred, target, weight=None, alpha=0.75, gamma=2.0,...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/losses/utils.py
import functools import mmcv import torch.nn.functional as F def reduce_loss(loss, reduction): """Reduce loss as specified. Args: loss (Tensor): Elementwise loss tensor. reduction (str): Options are "none", "mean" and "sum". Return: Tensor: Reduced loss tensor. """ reduc...
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MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/losses/ae_loss.py
import mmcv import torch import torch.nn as nn import torch.nn.functional as F from ..builder import LOSSES @mmcv.jit(derivate=True, coderize=True) def ae_loss_per_image(tl_preds, br_preds, match): """Associative Embedding Loss in one image. Associative Embedding Loss including two parts: pull loss and push...
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MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/losses/accuracy.py
import mmcv import torch.nn as nn @mmcv.jit(coderize=True) def accuracy(pred, target, topk=1, thresh=None): """Calculate accuracy according to the prediction and target. Args: pred (torch.Tensor): The model prediction, shape (N, num_class) target (torch.Tensor): The target of each prediction,...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/losses/focal_loss.py
import torch import torch.nn as nn import torch.nn.functional as F from mmcv.ops import sigmoid_focal_loss as _sigmoid_focal_loss from ..builder import LOSSES from .utils import weight_reduce_loss # This method is only for debugging def py_sigmoid_focal_loss(pred, target, ...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/losses/cross_entropy_loss.py
import torch import torch.nn as nn import torch.nn.functional as F from ..builder import LOSSES from .utils import weight_reduce_loss def cross_entropy(pred, label, weight=None, reduction='mean', avg_factor=None, class_weight=N...
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MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/losses/gaussian_focal_loss.py
import mmcv import torch.nn as nn from ..builder import LOSSES from .utils import weighted_loss @mmcv.jit(derivate=True, coderize=True) @weighted_loss def gaussian_focal_loss(pred, gaussian_target, alpha=2.0, gamma=4.0): """`Focal Loss <https://arxiv.org/abs/1708.02002>`_ for targets in gaussian distribution...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/losses/kd_loss.py
import mmcv import torch.nn as nn import torch.nn.functional as F from ..builder import LOSSES from .utils import weighted_loss @mmcv.jit(derivate=True, coderize=True) @weighted_loss def knowledge_distillation_kl_div_loss(pred, soft_label, ...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/backbones/hrnet.py
import torch.nn as nn from mmcv.cnn import (build_conv_layer, build_norm_layer, constant_init, kaiming_init) from mmcv.runner import load_checkpoint from torch.nn.modules.batchnorm import _BatchNorm from mmdet.utils import get_root_logger from ..builder import BACKBONES from .resnet import BasicB...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/backbones/regnet.py
import numpy as np import torch.nn as nn from mmcv.cnn import build_conv_layer, build_norm_layer from ..builder import BACKBONES from .resnet import ResNet from .resnext import Bottleneck @BACKBONES.register_module() class RegNet(ResNet): """RegNet backbone. More details can be found in `paper <https://arxi...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/backbones/trident_resnet.py
import torch import torch.nn as nn import torch.nn.functional as F import torch.utils.checkpoint as cp from mmcv.cnn import build_conv_layer, build_norm_layer, kaiming_init from torch.nn.modules.utils import _pair from mmdet.models.backbones.resnet import Bottleneck, ResNet from mmdet.models.builder import BACKBONES ...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/backbones/detectors_resnext.py
import math from mmcv.cnn import build_conv_layer, build_norm_layer from ..builder import BACKBONES from .detectors_resnet import Bottleneck as _Bottleneck from .detectors_resnet import DetectoRS_ResNet class Bottleneck(_Bottleneck): expansion = 4 def __init__(self, inplanes, ...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/backbones/swin_transformer.py
# -------------------------------------------------------- # Swin Transformer # Copyright (c) 2021 Microsoft # Licensed under The MIT License [see LICENSE for details] # Written by Ze Liu, Yutong Lin, Yixuan Wei # -------------------------------------------------------- import torch import torch.nn as nn import torch....
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/backbones/resnet.py
import torch.nn as nn import torch.utils.checkpoint as cp from mmcv.cnn import (build_conv_layer, build_norm_layer, build_plugin_layer, constant_init, kaiming_init) from mmcv.runner import load_checkpoint from torch.nn.modules.batchnorm import _BatchNorm from mmdet.utils import get_root_logger fr...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/backbones/detectors_resnet.py
import torch.nn as nn import torch.utils.checkpoint as cp from mmcv.cnn import build_conv_layer, build_norm_layer, constant_init from ..builder import BACKBONES from .resnet import Bottleneck as _Bottleneck from .resnet import ResNet class Bottleneck(_Bottleneck): r"""Bottleneck for the ResNet backbone in `Detec...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/backbones/ssd_vgg.py
import torch import torch.nn as nn import torch.nn.functional as F from mmcv.cnn import VGG, constant_init, kaiming_init, normal_init, xavier_init from mmcv.runner import load_checkpoint from mmdet.utils import get_root_logger from ..builder import BACKBONES @BACKBONES.register_module() class SSDVGG(VGG): """VGG...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/backbones/resnext.py
import math from mmcv.cnn import build_conv_layer, build_norm_layer from ..builder import BACKBONES from ..utils import ResLayer from .resnet import Bottleneck as _Bottleneck from .resnet import ResNet class Bottleneck(_Bottleneck): expansion = 4 def __init__(self, inplanes, ...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/backbones/resnest.py
import math import torch import torch.nn as nn import torch.nn.functional as F import torch.utils.checkpoint as cp from mmcv.cnn import build_conv_layer, build_norm_layer from ..builder import BACKBONES from ..utils import ResLayer from .resnet import Bottleneck as _Bottleneck from .resnet import ResNetV1d class RS...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/backbones/hourglass.py
import torch.nn as nn from mmcv.cnn import ConvModule from ..builder import BACKBONES from ..utils import ResLayer from .resnet import BasicBlock class HourglassModule(nn.Module): """Hourglass Module for HourglassNet backbone. Generate module recursively and use BasicBlock as the base unit. Args: ...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/backbones/res2net.py
import math import torch import torch.nn as nn import torch.utils.checkpoint as cp from mmcv.cnn import (build_conv_layer, build_norm_layer, constant_init, kaiming_init) from mmcv.runner import load_checkpoint from torch.nn.modules.batchnorm import _BatchNorm from mmdet.utils import get_root_log...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/models/backbones/darknet.py
# Copyright (c) 2019 Western Digital Corporation or its affiliates. import logging import torch.nn as nn from mmcv.cnn import ConvModule, constant_init, kaiming_init from mmcv.runner import load_checkpoint from torch.nn.modules.batchnorm import _BatchNorm from ..builder import BACKBONES class ResBlock(nn.Module): ...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/datasets/custom.py
import os.path as osp import warnings from collections import OrderedDict import mmcv import numpy as np from mmcv.utils import print_log from torch.utils.data import Dataset from mmdet.core import eval_map, eval_recalls from .builder import DATASETS from .pipelines import Compose @DATASETS.register_module() class ...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/datasets/dataset_wrappers.py
import bisect import math from collections import defaultdict import numpy as np from mmcv.utils import print_log from torch.utils.data.dataset import ConcatDataset as _ConcatDataset from .builder import DATASETS from .coco import CocoDataset @DATASETS.register_module() class ConcatDataset(_ConcatDataset): """A...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/datasets/builder.py
import copy import platform import random from functools import partial import numpy as np from mmcv.parallel import collate from mmcv.runner import get_dist_info from mmcv.utils import Registry, build_from_cfg from torch.utils.data import DataLoader from .samplers import DistributedGroupSampler, DistributedSampler, ...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/datasets/samplers/group_sampler.py
from __future__ import division import math import numpy as np import torch from mmcv.runner import get_dist_info from torch.utils.data import Sampler class GroupSampler(Sampler): def __init__(self, dataset, samples_per_gpu=1): assert hasattr(dataset, 'flag') self.dataset = dataset self....
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/datasets/samplers/distributed_sampler.py
import math import torch from torch.utils.data import DistributedSampler as _DistributedSampler class DistributedSampler(_DistributedSampler): def __init__(self, dataset, num_replicas=None, rank=None, shuffle=True, seed=0): ...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/datasets/pipelines/formating.py
from collections.abc import Sequence import mmcv import numpy as np import torch from mmcv.parallel import DataContainer as DC from ..builder import PIPELINES def to_tensor(data): """Convert objects of various python types to :obj:`torch.Tensor`. Supported types are: :class:`numpy.ndarray`, :class:`torch.T...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/utils/contextmanagers.py
import asyncio import contextlib import logging import os import time from typing import List import torch logger = logging.getLogger(__name__) DEBUG_COMPLETED_TIME = bool(os.environ.get('DEBUG_COMPLETED_TIME', False)) @contextlib.asynccontextmanager async def completed(trace_name='', name='', ...
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MDE-biological-vision-systems
MDE-biological-vision-systems-master/Swin-Transformer-Object-Detection/mmdet/utils/profiling.py
import contextlib import sys import time import torch if sys.version_info >= (3, 7): @contextlib.contextmanager def profile_time(trace_name, name, enabled=True, stream=None, end_stream=None): """Print time spent by CP...
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MMIL-Transformer
MMIL-Transformer-main/main.py
from utils.utils import make_parse from utils.core import test from torch.utils.data import DataLoader from datasets.datasets import h5file_Dataset from models.models import MultipleMILTransformer as MMILT import torch import numpy as np def main(args): torch.manual_seed(2023) model = MMILT(args).cuda() da...
941
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py
MMIL-Transformer
MMIL-Transformer-main/models/models.py
from utils.core import * from utils.utils import * import torch import random import torch.nn as nn from einops import rearrange from nystrom_attention import NystromAttention import torch.nn.functional as F class Attention(nn.Module): def __init__(self, dim, heads = 8, dim_head = 64, dropout = 0.): super(...
7,834
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MMIL-Transformer
MMIL-Transformer-main/datasets/datasets.py
from torch.utils.data import Dataset import pandas as pd import h5py, os import numpy as np import torch class h5file_Dataset(Dataset): def __init__(self, csv_file, h5file_dir, datatype): self.csv_file = pd.read_csv(csv_file) self.h5file_dir = h5file_dir self.datatype = datatype if ...
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py
MMIL-Transformer
MMIL-Transformer-main/utils/core.py
import torchmetrics import torch.nn as nn import torch from .utils import * import numpy as np from sklearn.cluster import KMeans torch.manual_seed(2023) def test(args,model,dataloader): np.random.seed(args.seed) print('-------testing-------') device=torch.device("cuda" if torch.cuda.is_available() else "...
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py
MMIL-Transformer
MMIL-Transformer-main/utils/utils.py
import pandas as pd import argparse import numpy as np from sklearn.cluster import KMeans import torch def make_parse(): parser = argparse.ArgumentParser() parser.add_argument('--type', default='TCGA',type=str) parser.add_argument('--mode', default='random',type=str) parser.add_argument('--in_chans', d...
5,115
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py
codeql
codeql-master/python/ql/test/query-tests/Variables/unused/variables_test.py
__all__ = [ 'is_used_var1' ] __author__ = "Mark" __hidden_marker = False #Unused parameter, local and global def u1(x): return 0 def u2(): x = 1 return 1 #These parameters are OK due to (potential overriding) class C(object): @abstractmethod def ok2(self, p): pass ...
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py
codeql
codeql-master/docs/language/ql-training/conf.py
# -*- coding: utf-8 -*- # # CodeQL training slides build configuration file # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are comm...
4,410
34.288
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py
codeql
codeql-master/docs/language/global-sphinx-files/global-conf.py
# -*- coding: utf-8 -*- # # Global configuration file, created on 29th April 2019. # # The config values below are used across all of the sphinx projects # # Note that not all possible configuration values are present in this file. # # All configuration values have a default; values that are commented out # serve to s...
3,810
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136
py
MVDet
MVDet-master/main.py
import os os.environ['OMP_NUM_THREADS'] = '1' import argparse import sys import shutil from distutils.dir_util import copy_tree import datetime import tqdm import numpy as np import torch import torch.optim as optim import torchvision.transforms as T from multiview_detector.datasets import * from multiview_detector.lo...
7,322
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118
py
MVDet
MVDet-master/video_visualize.py
import os os.environ['OMP_NUM_THREADS'] = '1' from PIL import Image, ImageDraw import tqdm import cv2 import matplotlib.pyplot as plt import numpy as np import torch import torchvision.transforms as T import torch.nn.functional as F from multiview_detector.datasets import frameDataset, Wildtrack, MultiviewX def _tra...
3,981
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MVDet
MVDet-master/multiview_detector/trainer.py
import time import torch import os import numpy as np import torch.nn.functional as F import matplotlib.pyplot as plt import cv2 from PIL import Image from multiview_detector.evaluation.evaluate import evaluate from multiview_detector.utils.nms import nms from multiview_detector.utils.meters import AverageMeter from mu...
13,033
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116
py
MVDet
MVDet-master/multiview_detector/models/image_proj_variant.py
import os import numpy as np import torch import torch.nn as nn import torch.nn.functional as F import kornia from torchvision.models.alexnet import alexnet from torchvision.models.vgg import vgg11 from torchvision.models.mobilenet import mobilenet_v2 from multiview_detector.models.resnet import resnet18, resnet50 from...
7,066
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113
py
MVDet
MVDet-master/multiview_detector/models/resnet.py
import torch import torch.nn as nn from torchvision.models.utils import load_state_dict_from_url __all__ = ['ResNet', 'resnet18', 'resnet34', 'resnet50', 'resnet101', 'resnet152', 'resnext50_32x4d', 'resnext101_32x8d', 'wide_resnet50_2', 'wide_resnet101_2'] model_urls = { 'resnet18': 'https:...
13,620
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py
MVDet
MVDet-master/multiview_detector/models/no_joint_conv_variant.py
import os import numpy as np import torch import torch.nn as nn import torch.nn.functional as F import kornia from torchvision.models.vgg import vgg11 from multiview_detector.models.resnet import resnet18 import matplotlib.pyplot as plt class NoJointConvVariant(nn.Module): def __init__(self, dataset, arch='resne...
6,467
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MVDet
MVDet-master/multiview_detector/models/persp_trans_detector.py
import os import numpy as np import torch import torch.nn as nn import torch.nn.functional as F import kornia from torchvision.models.vgg import vgg11 from multiview_detector.models.resnet import resnet18 import matplotlib.pyplot as plt class PerspTransDetector(nn.Module): def __init__(self, dataset, arch='resne...
6,609
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py
MVDet
MVDet-master/multiview_detector/models/res_proj_variant.py
import os import numpy as np import torch import torch.nn as nn import torch.nn.functional as F import kornia from torchvision.models.alexnet import alexnet from torchvision.models.vgg import vgg11 from torchvision.models.mobilenet import mobilenet_v2 from multiview_detector.models.resnet import resnet18, resnet50 imp...
6,501
48.257576
115
py
MVDet
MVDet-master/multiview_detector/datasets/MultiviewX.py
import os import numpy as np import cv2 import xml.etree.ElementTree as ET import re from torchvision.datasets import VisionDataset intrinsic_camera_matrix_filenames = ['intr_Camera1.xml', 'intr_Camera2.xml', 'intr_Camera3.xml', 'intr_Camera4.xml', 'intr_Camera5.xml', 'intr_Camera6...
6,438
45.323741
116
py
MVDet
MVDet-master/multiview_detector/datasets/Wildtrack.py
import os import numpy as np import cv2 import xml.etree.ElementTree as ET import re from torchvision.datasets import VisionDataset intrinsic_camera_matrix_filenames = ['intr_CVLab1.xml', 'intr_CVLab2.xml', 'intr_CVLab3.xml', 'intr_CVLab4.xml', 'intr_IDIAP1.xml', 'intr_IDIAP2.xml',...
6,641
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114
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MVDet
MVDet-master/multiview_detector/datasets/frameDataset.py
import os import json from scipy.stats import multivariate_normal from PIL import Image from scipy.sparse import coo_matrix from torchvision.datasets import VisionDataset import torch from torchvision.transforms import ToTensor from multiview_detector.utils.projection import * class frameDataset(VisionDataset): d...
9,885
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117
py
MVDet
MVDet-master/multiview_detector/loss/gaussian_mse.py
import numpy as np import torch from torch import nn import torch.nn.functional as F class GaussianMSE(nn.Module): def __init__(self): super().__init__() def forward(self, x, target, kernel): target = self._traget_transform(x, target, kernel) return F.mse_loss(x, target) def _tr...
586
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MVDet
MVDet-master/multiview_detector/utils/nms.py
import torch # Original author: Francisco Massa: # https://github.com/fmassa/object-detection.torch # Ported to PyTorch by Max deGroot (02/01/2017) def nms(points, scores, dist_thres=50 / 2.5, top_k=50): """Apply non-maximum suppression at test time to avoid detecting too many overlapping bounding boxes for a...
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MVDet
MVDet-master/multiview_detector/utils/image_utils.py
import numpy as np import cv2 from PIL import Image import torch class img_color_denormalize(object): def __init__(self, mean, std): self.mean = torch.FloatTensor(mean).view([1, -1, 1, 1]) self.std = torch.FloatTensor(std).view([1, -1, 1, 1]) def __call__(self, tensor): return tensor ...
871
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py
LiLT
LiLT-main/gen_weight_roberta_like.py
import torch import os, json import argparse from transformers import AutoConfig, AutoModel if __name__ == '__main__': parser = argparse.ArgumentParser() parser.add_argument('--lilt', type=str, required=True, help='Path to LiLT model.') parser.add_argument('--text', type=str, required=True, help='Path to...
1,234
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LiLT
LiLT-main/LiLTfinetune/utils.py
from dataclasses import dataclass from typing import Dict, Optional, Tuple import torch from transformers.file_utils import ModelOutput @dataclass class ReOutput(ModelOutput): loss: Optional[torch.FloatTensor] = None logits: torch.FloatTensor = None hidden_states: Optional[Tuple[torch.FloatTensor]] = No...
496
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py
LiLT
LiLT-main/LiLTfinetune/modules/decoders/re.py
import copy import torch from torch import nn from torch.nn import CrossEntropyLoss class BiaffineAttention(torch.nn.Module): """Implements a biaffine attention operator for binary relation classification. PyTorch implementation of the biaffine attention operator from "End-to-end neural relation extract...
7,079
42.975155
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py
LiLT
LiLT-main/LiLTfinetune/models/LiLTRobertaLike/modeling_LiLTRobertaLike.py
# coding=utf-8 import math import torch import torch.nn as nn import torch.utils.checkpoint from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss from transformers.activations import ACT2FN, gelu from transformers.file_utils import ( add_code_sample_docstrings, add_start_docstrings, add_start_do...
42,008
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py
LiLT
LiLT-main/LiLTfinetune/data/data_collator.py
from dataclasses import dataclass from typing import Optional, Union import torch from detectron2.structures import ImageList from transformers import PreTrainedTokenizerBase from transformers.file_utils import PaddingStrategy @dataclass class DataCollatorForKeyValueExtraction: """ Data collator that will d...
3,997
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LiLT
LiLT-main/LiLTfinetune/data/utils.py
import torch from detectron2.data.detection_utils import read_image from detectron2.data.transforms import ResizeTransform, TransformList def normalize_bbox(bbox, size): return [ int(1000 * bbox[0] / size[0]), int(1000 * bbox[1] / size[1]), int(1000 * bbox[2] / size[0]), int(1000 ...
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