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location-mode-prediction
location-mode-prediction-main/main_baselines.py
import torch from utils.dataloader import sp_loc_dataset, collate_fn from baselines.baselines import baselines if __name__ == "__main__": previous_day = 7 source_root = r"./data/" dataset = "gc" dataset_train = sp_loc_dataset(source_root, dataset=dataset, data_type="train", previous_day=previous_day...
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location-mode-prediction
location-mode-prediction-main/baselines/baselines.py
import numpy as np import torch class baselines: def __init__(self, train_loader, val_loader, test_loader): self.train_loader = train_loader self.val_loader = val_loader self.test_loader = test_loader self.persistent_forcast() self.frequent_forcast() self.markov_for...
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location-mode-prediction
location-mode-prediction-main/models/embed.py
import torch import torch.nn as nn from torch import Tensor import math class PositionalEncoding(nn.Module): def __init__(self, emb_size: int, dropout: float, maxlen: int = 5000): super(PositionalEncoding, self).__init__() den = torch.exp(-torch.arange(0, emb_size, 2) * math.log(10000) / emb_size...
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location-mode-prediction
location-mode-prediction-main/models/model_mode.py
import torch.nn as nn import numpy as np import torch, math from torch import Tensor import torch.nn.functional as F from models.embed import AllEmbedding class TransEncoderMode(nn.Module): def __init__(self, config) -> None: super(TransEncoderMode, self).__init__() self.d_input = config.base_em...
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location-mode-prediction
location-mode-prediction-main/models/model.py
import torch.nn as nn import numpy as np import torch, math from torch import Tensor import torch.nn.functional as F from models.embed import AllEmbedding class TransEncoder(nn.Module): def __init__(self, config) -> None: super(TransEncoder, self).__init__() self.d_input = config.base_emb_size ...
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location-mode-prediction
location-mode-prediction-main/models/RNNs.py
import torch import torch.nn as nn from models.embed import AllEmbedding from models.model import FullyConnected class RNNs(nn.Module): """Baseline LSTM model.""" def __init__(self, config): super(RNNs, self).__init__() self.attention = config.attention self.d_input = config.base_emb_...
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location-mode-prediction
location-mode-prediction-main/utils/dataloader.py
import pandas as pd import numpy as np import geopandas as gpd from tqdm import tqdm from pathlib import Path import pickle as pickle from shapely import wkt from joblib import Parallel, delayed from sklearn.preprocessing import OrdinalEncoder import os import torch from torch.nn.utils.rnn import pad_sequence import ...
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location-mode-prediction
location-mode-prediction-main/utils/utils.py
from msilib.schema import Error import yaml import random, torch, os import numpy as np import pandas as pd from utils.train import trainNet, test, get_performance_dict # from utils.train_mobTcast import trainNet_tcast, test_tcast from utils.train_mode import trainNet_mode, test_mode from utils.dataloader import sp_l...
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location-mode-prediction
location-mode-prediction-main/utils/earlystopping.py
import numpy as np import torch class EarlyStopping: """Early stops the training if validation loss doesn't improve after a given patience.""" def __init__(self, logdir, patience=7, verbose=False, delta=0): """ Args: patience (int): How long to wait after last time validation loss...
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location-mode-prediction
location-mode-prediction-main/utils/train_mode.py
import sys, os import pandas as pd import numpy as np import torch from torch.optim.lr_scheduler import StepLR from sklearn.metrics import f1_score import time from transformers import get_linear_schedule_with_warmup from utils.earlystopping import EarlyStopping from utils.dataloader import load_pk_file from utils....
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location-mode-prediction
location-mode-prediction-main/utils/train.py
import sys, os import pandas as pd import numpy as np import torch from torch.optim.lr_scheduler import StepLR from sklearn.metrics import f1_score import time from transformers import get_linear_schedule_with_warmup from utils.earlystopping import EarlyStopping from utils.dataloader import load_pk_file def get_p...
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dolly
dolly-master/train_dolly.py
# Databricks notebook source # MAGIC %md # MAGIC ## Train Dolly # MAGIC # MAGIC This fine-tunes EleutherAI Pythia models # MAGIC (e.g. [pythia-2.8b](https://huggingface.co/EleutherAI/pythia-2.8b), # MAGIC [pythia-6.9b](https://huggingface.co/EleutherAI/pythia-6.9b), or # MAGIC [pythia-12b](https://huggingface.co/Eleuth...
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dolly
dolly-master/training/generate.py
import logging import re from typing import List, Tuple import torch import numpy as np from transformers import ( AutoModelForCausalLM, AutoTokenizer, Pipeline, PreTrainedModel, PreTrainedTokenizer, ) from transformers.utils import is_tf_available if is_tf_available(): import tensorflow as t...
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dolly
dolly-master/training/trainer.py
# Copyright 2023 Databricks, Inc. # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # http://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing...
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IIM
IIM-main/test.py
import os import torch import torch.nn.functional as F from torch.autograd import Variable import torchvision.transforms as standard_transforms import misc.transforms as own_transforms import tqdm from model.locator import Crowd_locator from misc.utils import * from PIL import Image, ImageOps import cv2 from collecti...
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IIM
IIM-main/config.py
import os from easydict import EasyDict as edict import time import torch # init __C = edict() cfg = __C #------------------------------TRAIN------------------------ __C.SEED = 3035 # random seed, for reproduction __C.DATASET = 'JHU' # dataset selection: NWPU, SHHA, SHHB, QNRF, FDST __C.NET = 'HR_Net' # optiona...
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IIM
IIM-main/train.py
import os import numpy as np import torch import datasets from config import cfg from importlib import import_module #------------prepare enviroment------------ seed = cfg.SEED if seed is not None: np.random.seed(seed) torch.manual_seed(seed) torch.cuda.manual_seed(seed) os.environ["CUDA_VISIBLE_DEVICES"]...
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IIM
IIM-main/trainer.py
import numpy as np import torch from torch import optim from torch.autograd import Variable from torch.optim.lr_scheduler import StepLR import torch.nn.functional as F from model.locator import Crowd_locator from config import cfg from misc.utils import * import datasets import cv2 from tqdm import tqdm from misc.compu...
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IIM
IIM-main/saved_exp_results/FDST-HR/config.py
import os from easydict import EasyDict as edict import time import torch # init __C = edict() cfg = __C #------------------------------TRAIN------------------------ __C.SEED = 3035 # random seed, for reproduction __C.DATASET = 'FDST' # dataset selection: GCC, SHHA, SHHB, UCF50, QNRF, WE, Mall, UCSD __C.NET = 'H...
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IIM
IIM-main/saved_exp_results/SHHA-VGG16/config.py
import os from easydict import EasyDict as edict import time import torch # init __C = edict() cfg = __C #------------------------------TRAIN------------------------ __C.SEED = 3035 # random seed, for reproduction __C.DATASET = 'SHHA' # dataset selection: NWPU, SHHA, SHHB, QNRF, FDST __C.NET = 'VGG16_FPN' # opt...
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IIM
IIM-main/saved_exp_results/SHHB-HR/config.py
import os from easydict import EasyDict as edict import time import torch # init __C = edict() cfg = __C #------------------------------TRAIN------------------------ __C.SEED = 3035 # random seed, for reproduction __C.DATASET = 'SHHB' # dataset selection: GCC, SHHA, SHHB, UCF50, QNRF, WE, Mall, UCSD __C.NET = 'H...
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IIM
IIM-main/saved_exp_results/SHHA-HR/config.py
import os from easydict import EasyDict as edict import time import torch # init __C = edict() cfg = __C #------------------------------TRAIN------------------------ __C.SEED = 3035 # random seed, for reproduction __C.DATASET = 'SHHA' # dataset selection: GCC, SHHA, SHHB, UCF50, QNRF, WE, Mall, UCSD __C.NET = 'H...
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IIM
IIM-main/saved_exp_results/JHU-HR/config.py
import os from easydict import EasyDict as edict import time import torch # init __C = edict() cfg = __C #------------------------------TRAIN------------------------ __C.SEED = 3035 # random seed, for reproduction __C.DATASET = 'JHU' # dataset selection: NWPU, SHHA, SHHB, QNRF, FDST __C.NET = 'HR_Net' # optiona...
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IIM
IIM-main/saved_exp_results/JHU-VGG16/config.py
import os from easydict import EasyDict as edict import time import torch # init __C = edict() cfg = __C #------------------------------TRAIN------------------------ __C.SEED = 3035 # random seed, for reproduction __C.DATASET = 'JHU' # dataset selection: NWPU, SHHA, SHHB, QNRF, FDST __C.NET = 'VGG16_FPN' # opti...
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IIM
IIM-main/saved_exp_results/QNRF-VGG16/config.py
import os from easydict import EasyDict as edict import time import torch # init __C = edict() cfg = __C #------------------------------TRAIN------------------------ __C.SEED = 3035 # random seed, for reproduction __C.DATASET = 'QNRF' # dataset selection: NWPU, SHHA, SHHB, QNRF, FDST __C.NET = 'VGG16_FPN' # opt...
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IIM
IIM-main/saved_exp_results/FDST-VGG16/config.py
import os from easydict import EasyDict as edict import time import torch # init __C = edict() cfg = __C #------------------------------TRAIN------------------------ __C.SEED = 3035 # random seed, for reproduction __C.DATASET = 'FDST' # dataset selection: NWPU, SHHA, SHHB, QNRF, FDST __C.NET = 'VGG16_FPN' # opt...
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IIM
IIM-main/saved_exp_results/SHHB-VGG16/config.py
import os from easydict import EasyDict as edict import time import torch # init __C = edict() cfg = __C #------------------------------TRAIN------------------------ __C.SEED = 3035 # random seed, for reproduction __C.DATASET = 'SHHB' # dataset selection: NWPU, SHHA, SHHB, QNRF, FDST __C.NET = 'VGG16_FPN' # opt...
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IIM
IIM-main/saved_exp_results/QNRF-HR/config.py
import os from easydict import EasyDict as edict import time import torch # init __C = edict() cfg = __C #------------------------------TRAIN------------------------ __C.SEED = 3035 # random seed, for reproduction __C.DATASET = 'QNRF' # dataset selection: GCC, SHHA, SHHB, UCF50, QNRF, WE, Mall, UCSD __C.NET = 'H...
1,684
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IIM
IIM-main/saved_exp_results/NWPU-VGG16/config.py
import os from easydict import EasyDict as edict import time import torch # init __C = edict() cfg = __C #------------------------------TRAIN------------------------ __C.SEED = 3035 # random seed, for reproduction __C.DATASET = 'NWPU' # dataset selection: GCC, SHHA, SHHB, UCF50, QNRF, WE, Mall, UCSD __C.NET = 'V...
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IIM
IIM-main/saved_exp_results/NWPU-HR/config.py
import os from easydict import EasyDict as edict import time import torch # init __C = edict() cfg = __C #------------------------------TRAIN------------------------ __C.SEED = 3035 # random seed, for reproduction __C.DATASET = 'NWPU' # dataset selection: GCC, SHHA, SHHB, UCF50, QNRF, WE, Mall, UCSD __C.NET = 'H...
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IIM
IIM-main/datasets/basedataset.py
# -*- coding: utf-8 -*- import torch.utils.data as data import os from PIL import Image import numpy as np import torch import math import json class Dataset(data.Dataset): def __init__(self, datasetname, mode, **argv): self.mode = mode self.datasetname = datasetname self.img_path = [] ...
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IIM
IIM-main/datasets/FIXrandaugment.py
# code in this file is adpated from # https://github.com/ildoonet/pytorch-randaugment/blob/master/RandAugment/augmentations.py # https://github.com/google-research/fixmatch/blob/master/third_party/auto_augment/augmentations.py # https://github.com/google-research/fixmatch/blob/master/libml/ctaugment.py import logging i...
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IIM
IIM-main/datasets/__init__.py
# -*- coding: utf-8 -*- import os from importlib import import_module import misc.transforms as own_transforms import torchvision.transforms as standard_transforms from . import basedataset from . import setting from torch.utils.data import DataLoader from torch.utils.data import RandomSampler import pdb from config i...
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IIM
IIM-main/datasets/dataset_prepare/prepare_SHHA.py
from PIL import Image import os import cv2 as cv import matplotlib.pyplot as plt from pylab import plot import numpy as np import json from functions import euclidean_dist, generate_cycle_mask, average_del_min import scipy.io as scio import glob import torch import torch.nn.functional as F mode = 'train' Root = '/med...
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IIM
IIM-main/datasets/dataset_prepare/prepare_QNRF.py
from PIL import Image import os import cv2 as cv import matplotlib.pyplot as plt from pylab import plot import numpy as np import json import math from functions import euclidean_dist, generate_cycle_mask, average_del_min import scipy.io as scio import glob import torch import torch.nn.functional as F mode = 'train' ...
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IIM
IIM-main/datasets/dataset_prepare/functions.py
import numpy as np def euclidean_dist( test_matrix, train_matrix): """ Args: x: pytorch Variable, with shape [m, d] y: pytorch Variable, with shape [n, d] Returns: dist: pytorch Variable, with shape [m, n] """ num_test = test_matrix.shape[0] num_train = train_matrix.shape[0] ...
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IIM
IIM-main/datasets/dataset_prepare/scale_map.py
import json from matplotlib import pyplot as plt import matplotlib import os import random import torch from torch.autograd import Variable import torchvision.transforms as standard_transforms import misc.transforms as own_transforms import pandas as pd import numpy as np import pdb from tqdm import tqdm import cv2 a...
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IIM
IIM-main/datasets/dataset_prepare/prepare_SHHB.py
from PIL import Image import os import cv2 as cv import matplotlib.pyplot as plt from pylab import plot import numpy as np import json import math from functions import euclidean_dist, generate_cycle_mask, average_del_min import scipy.io as scio import glob import torch import torch.nn.functional as F mode = 'train' ...
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IIM
IIM-main/datasets/dataset_prepare/models/CC.py
import torch import torch.nn as nn import torch.nn.functional as F from importlib import import_module from . import counters import pdb class CrowdCounter(nn.Module): def __init__(self,gpus,model_name): super(CrowdCounter, self).__init__() # pdb.set_trace() ccnet = getattr(getattr...
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IIM
IIM-main/datasets/dataset_prepare/models/counters/Res50_SCAR.py
import torch.nn as nn import torch from torchvision import models import torch.nn.functional as F from misc.utils import * import pdb # model_path = '../PyTorch_Pretrained/resnet101-5d3b4d8f.pth' class Res50_SCAR(nn.Module): def __init__(self, pretrained=True): super(Res50_SCAR, self).__init__() ...
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IIM
IIM-main/misc/inflation.py
# -*- coding: utf-8 -*- import torch import pdb import torch. nn as nn import torch.nn.functional as F from torch.autograd import Variable import math import numpy class inflation(nn.Module): def __init__(self,K=15,stride=1,padding=None): super(inflation,self).__init__() weight = numpy.zeros((K,K)) t = (K-1)/2...
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IIM
IIM-main/misc/utils.py
import os import sys import math import numpy as np import time import random import shutil import cv2 from PIL import Image import pdb import torch from torch import nn import torchvision.utils as vutils import torchvision.transforms as standard_transforms def read_pred_and_gt(pred_file,gt_file): # read pred ...
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IIM
IIM-main/misc/transforms.py
import numbers import random import numpy as np from PIL import Image, ImageOps, ImageFilter from config import cfg import torch import numpy import pdb import cv2 from torchvision.transforms import functional as TrF from misc import inflation class ProcessSub(object): def __init__(self,T=0.1,K=51): self.T...
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IIM
IIM-main/model/locator.py
from model.HR_Net.seg_hrnet import get_seg_model from model.VGG.VGG16_FPN import VGG16_FPN import torch.nn as nn import torch.nn.functional as F import torch import numpy as np from model.PBM import BinarizedModule from torchvision import models class Crowd_locator(nn.Module): def __init__(self, net_name, gpu_id,...
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IIM
IIM-main/model/PBM.py
import torch from torch.autograd import Function from torch.autograd import Variable import torch.nn as nn import torch.nn.functional as F class BinarizedF(Function): @staticmethod def forward(ctx, input, threshold): ctx.save_for_backward(input,threshold) a = torch.ones_like(input).cuda() b = torch.ze...
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IIM
IIM-main/model/VGG/VGG16_FPN.py
from torchvision import models import sys import torch.nn.functional as F import torch.nn as nn from misc.utils import * mode = 'Vgg_bn' class VGG16_FPN(nn.Module): def __init__(self, pretrained=True): super(VGG16_FPN, self).__init__() if mode == 'Vgg_bn': vgg = models.vgg16_bn(pretrai...
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IIM
IIM-main/model/HR_Net/seg_hrnet.py
# ------------------------------------------------------------------------------ # Copyright (c) Microsoft # Licensed under the MIT License. # Written by Ke Sun (sunk@mail.ustc.edu.cn) # ------------------------------------------------------------------------------ from __future__ import absolute_import from __future_...
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VidLanKD
VidLanKD-main/vlm/run_glue.py
# coding=utf-8 # Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team. # Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a cop...
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VidLanKD
VidLanKD-main/vlm/run_vlm_distributed.py
# coding=utf-8 # Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team. # Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a cop...
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VidLanKD
VidLanKD-main/vlm/model.py
import math import torch import torch.nn.functional as F from torch.nn import CrossEntropyLoss, MSELoss, SmoothL1Loss from torch import nn from transformers import * from transformers.modeling_bert import BertOnlyMLMHead from vteacher.loss import * BertLayerNorm = torch.nn.LayerNorm # The GLUE function is copied f...
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VidLanKD
VidLanKD-main/vlm/data.py
import copy import os import random import h5py import torch from torch.utils.data import DataLoader, Dataset import tqdm class CoLDataset(Dataset): IGNORE_ID = -100 sent_strategy = 'first' def __init__(self, file_path, tokenizer_name, tokenizer, block_size=512, split_sent=False, verbos...
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VidLanKD
VidLanKD-main/vlm/run_lm_distributed.py
# coding=utf-8 # Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team. # Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a cop...
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VidLanKD
VidLanKD-main/vlm/run_glue_epochs.py
import argparse import math import os from pathlib import Path from pprint import pprint import subprocess import threading import time import torch parser = argparse.ArgumentParser() parser.add_argument( "--load", default=None, type=str, help="The model loaded, e.g., snap/vlm/wiki103_small" ) parser.add_argu...
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VidLanKD
VidLanKD-main/vteacher/run_vlm_distributed.py
# coding=utf-8 # Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team. # Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a cop...
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VidLanKD
VidLanKD-main/vteacher/loss.py
import torch import torch.nn as nn import torch.nn.functional as F import torch.distributed as dist class NSTLoss(nn.Module): ''' Like What You Like: Knowledge Distill via Neuron Selectivity Transfer https://arxiv.org/pdf/1707.01219.pdf ''' def __init__(self): super(NSTLoss, self).__init__() def forward(self...
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VidLanKD
VidLanKD-main/vteacher/model.py
import math import torch import torch.nn.functional as F from torch.nn import CrossEntropyLoss, MSELoss, SmoothL1Loss from torch import nn from transformers import * from transformers.modeling_bert import * from vteacher.loss import paired_hinge_rank_loss, batchwise_hinge_rank_loss, contrastive_loss BertLayerNorm = ...
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VidLanKD
VidLanKD-main/vteacher/data.py
import copy import os import random import json import math import time import glob import numpy as np import h5py import torch from torch.utils.data import DataLoader, Dataset import tqdm feature_dir = '.' feature_dir_data = '.' def find_overlap(s1, s2): for i in range(len(s1)): test1, test2 = s1[i:], s...
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VidLanKD
VidLanKD-main/vteacher/file_utils.py
import os import logging import shutil import tempfile import json from urllib.parse import urlparse from pathlib import Path from typing import Optional, Tuple, Union, IO, Callable, Set from hashlib import sha256 from functools import wraps from tqdm import tqdm import boto3 from botocore.exceptions import ClientErr...
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dybm
dybm-master/src/benchmarks/CompareLSTMandDyBM.py
# (C) Copyright IBM Corp. 2016 # # Licensed under the Apache License, Version 2.0 (the "License"); you may # not use this file except in compliance with the License. You may obtain # a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writin...
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dybm
dybm-master/src/pydybm/docs/conf.py
#!/usr/bin/env python3 # -*- coding: utf-8 -*- # # pydybm documentation build configuration file, created by # sphinx-quickstart on Sat Oct 7 01:24:11 2017. # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # aut...
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plix
plix-main/setup.py
from setuptools import setup, find_packages with open("README.md") as readme_file: README = readme_file.read() setup_args = dict( name="plixkws", version="1.0", description="Plug-and-Play Multilingual Few-shot Spoken Words Recognition", long_description_content_type="text/markdown", long_descr...
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plix
plix-main/test_model.py
import torch from plixkws import model, util fws_model = model.load(encoder_name="base", language="en", device="cpu") support = { "paths": ["./test_clips/aandachtig.wav", "./test_clips/stroom.wav", "./test_clips/persbericht.wav", "./test_clips/klinkers.wav", "./test_clips/zinsbouw.wav"], "labe...
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plix
plix-main/plixkws/protonet.py
import torch from torch import nn import torch.nn.functional as F class ProtoNet(nn.Module): def __init__(self, backbone: nn.Module): super().__init__() self.backbone = backbone def forward(self, support: dict, query: dict): """ ProtoNet forward-pass. Args: ...
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plix
plix-main/plixkws/model.py
import os import wget import json from pathlib import Path import numpy as np import torch import torch.nn as nn from . import backbone as bk from . import protonet as pt from . import util def load(encoder_name: str = "base", language: str = "multi", models_dir: str = "models", device: str = "cuda"): ...
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plix
plix-main/plixkws/backbone.py
import torch from torch import nn from torchaudio.transforms import MelSpectrogram import timm class Backbone(nn.Module): """ A feature extractor that produces D-dimensional embeddings from audio samples. Args: encoder_name (str): Name of the encoder to initialize. sample_rate (int):...
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plix
plix-main/plixkws/util.py
import numpy as np import librosa import torch import torch.nn.functional as F def pad_or_trim(array, length, *, axis = -1): """ Pad or trim the audio array to length. """ if torch.is_tensor(array): if array.shape[axis] > length: array = array.index_select(dim=axis, index=torch.aran...
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moc
moc-master/benchmark/python_recoures_dice/cf-dice.py
import csv import DiCE.dice_ml as dice_ml from DiCE.dice_ml.utils import helpers # helper functions import pandas as pd import os import tensorflow as tf import json import click import re import numpy as np from datetime import datetime from tensorflow import keras @click.command() @click.option('--openmlid', type=st...
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moc
moc-master/benchmark/python_recoures_dice/cf-recourse.py
import pandas as pd import numpy as np from sklearn.linear_model import LogisticRegression from recourse import action_set from recourse import flipset import click import os import json import tensorflow as tf from tensorflow import keras import random @click.command() @click.option('--openmlid', help = 'ID of openml...
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PMIndiaSum
PMIndiaSum-main/baselines/tester.py
import torch import argparse from tqdm import tqdm import pandas as pd from rouge_score import rouge_scorer import nltk nltk.download('punkt') from nltk.tokenize import sent_tokenize from transformers import MBartForConditionalGeneration, AutoConfig, PreTrainedTokenizerFast # Required args parser = argparse.ArgumentP...
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PMIndiaSum
PMIndiaSum-main/baselines/trainer.py
import datasets import logging import os import sys import transformers from dataclasses import dataclass, field from datasets import load_dataset, load_metric from transformers import (AutoModelForSeq2SeqLM, AutoTokenizer, DataCollatorForSeq2Seq, EarlyStoppingCallback, HfArgumentParser, Seq2S...
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dsb2018_topcoders
dsb2018_topcoders-master/selim/losses.py
import keras.backend as K from keras.losses import categorical_crossentropy def hard_dice_coef(y_true, y_pred, smooth=1e-3): y_true_f = K.flatten(K.round(y_true[..., 0])) y_pred_f = K.flatten(K.round(y_pred[..., 0])) intersection = K.sum(y_true_f * y_pred_f) return 100. * (2. * intersection + smooth) ...
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dsb2018_topcoders
dsb2018_topcoders-master/selim/pred_test.py
import os from params import args os.environ['CUDA_VISIBLE_DEVICES'] = args.gpu from keras.preprocessing.image import img_to_array, load_img from keras.applications.imagenet_utils import preprocess_input from models.model_factory import make_model from os import path, mkdir, listdir import numpy as np np.random....
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dsb2018_topcoders
dsb2018_topcoders-master/selim/resnetv2.py
# -*- coding: utf-8 -*- """Inception-ResNet V2 model for Keras. Model naming and structure follows TF-slim implementation (which has some additional layers and different number of filters from the original arXiv paper): https://github.com/tensorflow/models/blob/master/research/slim/nets/inception_resnet_v2.py Pre-tra...
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dsb2018_topcoders
dsb2018_topcoders-master/selim/train.py
import gc import cv2 cv2.setNumThreads(0) cv2.ocl.setUseOpenCL(False) import os from params import args os.environ['CUDA_VISIBLE_DEVICES'] = args.gpu from aug.transforms import aug_mega_hardcore from keras.losses import binary_crossentropy from keras.utils.training_utils import multi_gpu_model from datasets.dsb_bin...
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dsb2018_topcoders
dsb2018_topcoders-master/selim/pred_oof.py
import os from params import args os.environ['CUDA_VISIBLE_DEVICES'] = args.gpu from keras.applications.imagenet_utils import preprocess_input from keras.preprocessing.image import img_to_array, load_img from models.model_factory import make_model from os import path, mkdir, listdir import numpy as np np.random.s...
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dsb2018_topcoders
dsb2018_topcoders-master/selim/resnets.py
# -*- coding: utf-8 -*- """ keras_resnet.models._2d ~~~~~~~~~~~~~~~~~~~~~~~ This module implements popular two-dimensional residual models. """ import keras.backend import keras.layers import keras.models import keras.regularizers def ResNet(inputs, blocks, block, include_top=True, classes=1000, numerical_names=Non...
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dsb2018_topcoders
dsb2018_topcoders-master/selim/models/xception_padding.py
# -*- coding: utf-8 -*- """Xception V1 model for Keras. On ImageNet, this model gets to a top-1 validation accuracy of 0.790 and a top-5 validation accuracy of 0.945. Do note that the input image format for this model is different than for the VGG16 and ResNet models (299x299 instead of 224x224), and that the input p...
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dsb2018_topcoders
dsb2018_topcoders-master/selim/models/unets.py
from keras import Model, Input from keras.applications import DenseNet169 from keras.layers import UpSampling2D, Conv2D, BatchNormalization, Activation, concatenate, Add from keras.utils import get_file from models.xception_padding import Xception from resnets import ResNet101, ResNet152, ResNet50 from resnetv2 impor...
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dsb2018_topcoders
dsb2018_topcoders-master/selim/datasets/base.py
import os import random import time from abc import abstractmethod import cv2 import numpy as np from keras.applications import imagenet_utils from keras.preprocessing.image import Iterator, load_img, img_to_array from params import args class BaseMaskDatasetIterator(Iterator): def __init__(self, ...
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dsb2018_topcoders
dsb2018_topcoders-master/selim/datasets/dsb_binary.py
import random import os import cv2 import numpy as np import pandas as pd from skimage import measure from skimage.filters import median from skimage.morphology import dilation, watershed, square, erosion from tqdm import tqdm from datasets.base import BaseMaskDatasetIterator from params import args class DSB2018Bin...
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dsb2018_topcoders
dsb2018_topcoders-master/victor/train_inception_softmax.py
from os import path, mkdir import numpy as np np.random.seed(1) import random random.seed(1) import tensorflow as tf tf.set_random_seed(1) import timeit import cv2 from keras.optimizers import Adam from keras.callbacks import ModelCheckpoint, LearningRateScheduler #, TensorBoard from models import get_inception_resnet_...
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dsb2018_topcoders
dsb2018_topcoders-master/victor/train_densenet_softmax.py
from os import path, mkdir import numpy as np np.random.seed(1) import random random.seed(1) import tensorflow as tf tf.set_random_seed(1) import timeit import cv2 from keras.optimizers import Adam from keras.callbacks import ModelCheckpoint, LearningRateScheduler #, TensorBoard from models import get_densenet121_unet_...
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dsb2018_topcoders
dsb2018_topcoders-master/victor/tune_inception_softmax_final.py
from os import path, mkdir import numpy as np np.random.seed(1) import random random.seed(1) import tensorflow as tf tf.set_random_seed(1) import timeit import cv2 from keras.optimizers import Adam from keras.callbacks import ModelCheckpoint, LearningRateScheduler #, TensorBoard from models import get_inception_resnet_...
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dsb2018_topcoders
dsb2018_topcoders-master/victor/models.py
from keras import backend as K from keras.models import Model from keras.layers import Input, BatchNormalization, Conv2D, MaxPooling2D, AveragePooling2D, ZeroPadding2D, concatenate, Concatenate, UpSampling2D, Activation from keras.losses import categorical_crossentropy from keras.applications.inception_resnet_v2 import...
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dsb2018_topcoders
dsb2018_topcoders-master/victor/tune_densenet_softmax_final.py
from os import path, mkdir import numpy as np np.random.seed(1) import random random.seed(1) import tensorflow as tf tf.set_random_seed(1) import timeit import cv2 from keras.optimizers import Adam from keras.callbacks import ModelCheckpoint, LearningRateScheduler #, TensorBoard from models import get_densenet121_unet_...
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dsb2018_topcoders
dsb2018_topcoders-master/albu/src/bowl_train.py
import torch import os import cv2 from scipy.misc import imread import numpy as np from utils import get_csv_folds, update_config, get_folds from config import Config from dataset.reading_image_provider import ReadingImageProvider, CachingImageProvider, InFolderImageProvider from dataset.raw_image import RawImageType ...
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dsb2018_topcoders
dsb2018_topcoders-master/albu/src/pytorch_utils/callbacks.py
import torch from copy import deepcopy import os from tensorboardX import SummaryWriter from torch.optim.lr_scheduler import _LRScheduler from bisect import bisect_right class Callback(object): """ Abstract base class used to build new callbacks. """ def __init__(self): self.trainer = None ...
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dsb2018_topcoders
dsb2018_topcoders-master/albu/src/pytorch_utils/loss.py
import torch from torch import nn from torch.nn import functional as F import torch.nn.functional as F eps = 1e-3 def dice_round(preds, trues, is_average=True): preds = torch.round(preds) return dice_loss(preds, trues, is_average=is_average) def multi_class_dice_round(preds, trues, is_average=True): pred...
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dsb2018_topcoders
dsb2018_topcoders-master/albu/src/pytorch_utils/eval.py
import os import cv2 cv2.setNumThreads(0) cv2.ocl.setUseOpenCL(False) import numpy as np import torch import torch.nn.functional as F from torch import nn # torch.backends.cudnn.benchmark = True import tqdm from augmentations.tta import transforms as TTA from augmentations.transforms import ToTensor from dataset.neur...
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dsb2018_topcoders
dsb2018_topcoders-master/albu/src/pytorch_utils/train.py
import os from collections import defaultdict import torch import torch.nn.functional as F from torch import nn from torch import optim from torch.autograd import Variable from torch.optim.lr_scheduler import ExponentialLR from torch.utils.data.dataloader import DataLoader as PytorchDataLoader from tqdm import tqdm fr...
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dsb2018_topcoders
dsb2018_topcoders-master/albu/src/augmentations/functional.py
import cv2 cv2.setNumThreads(0) cv2.ocl.setUseOpenCL(False) import numpy as np import math from scipy.ndimage.filters import gaussian_filter from functools import wraps import torch import torchvision.transforms.functional as F def vflip(img): return cv2.flip(img, 0) def hflip(img): return cv2.flip(img, 1) ...
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dsb2018_topcoders
dsb2018_topcoders-master/albu/src/augmentations/tta.py
import numpy as np import cv2 import os import torch from torch.nn import functional as F class TTAOp: def __init__(self, sigmoid=True): self.sigmoid = sigmoid def __call__(self, model, batch): forwarded = torch.autograd.Variable(torch.from_numpy(self.forward(batch.numpy())), volatile=True).c...
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dsb2018_topcoders
dsb2018_topcoders-master/albu/src/pytorch_zoo/abstract_model.py
import math import torch import os import torch.nn as nn import torch.nn.functional as F import torch.utils.model_zoo as model_zoo from pytorch_zoo import resnet, vgg, inception from pytorch_zoo.inplace_abn.models.wider_resnet import init_wider_resnet from pytorch_zoo.dpn import dpn92 class Upscale: transposed_con...
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dsb2018_topcoders
dsb2018_topcoders-master/albu/src/pytorch_zoo/inception.py
import torch import torch.nn as nn import torch.nn.functional as F import torch.utils.model_zoo as model_zoo __all__ = ['Inception3', 'inception_v3'] model_urls = { # Inception v3 ported from TensorFlow 'inception_v3_google': 'https://download.pytorch.org/models/inception_v3_google-1a9a5a14.pth', } def in...
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dsb2018_topcoders
dsb2018_topcoders-master/albu/src/pytorch_zoo/resnet.py
import torch.nn as nn import math import torch.utils.model_zoo as model_zoo __all__ = ['ResNet', 'resnet18', 'resnet34', 'resnet50', 'resnet101', 'resnet152'] model_urls = { 'resnet18': 'https://download.pytorch.org/models/resnet18-5c106cde.pth', 'resnet34': 'https://download.pytorch.org/models/r...
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dsb2018_topcoders
dsb2018_topcoders-master/albu/src/pytorch_zoo/vgg.py
import math import torch.nn as nn __all__ = [ 'VGG', 'vgg11', 'vgg11_bn', 'vgg13', 'vgg13_bn', 'vgg16', 'vgg16_bn', 'vgg19_bn', 'vgg19', ] model_urls = { 'vgg11': 'https://download.pytorch.org/models/vgg11-bbd30ac9.pth', 'vgg13': 'https://download.pytorch.org/models/vgg13-c768596a.pth', 'vgg16':...
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dsb2018_topcoders
dsb2018_topcoders-master/albu/src/pytorch_zoo/unet.py
import math import torch import torch.nn as nn from pytorch_zoo.abstract_model import EncoderDecoder, get_slice, Upscale, UnetDecoderBlock, ConvBottleneck, SumBottleneck, UnetBNDecoderBlock, PathAggregationEncoderDecoder, UnetDoubleDecoderBlock, DPEncoderDecoder import torch.nn.functional as F class Unet(EncoderDecode...
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dsb2018_topcoders
dsb2018_topcoders-master/albu/src/pytorch_zoo/resnet38unet.py
import math import torch import torch.nn as nn from pytorch_zoo.abstract_model import EncoderDecoder, get_slice, Upscale, UnetDecoderBlock, ConvBottleneck, SumBottleneck, UnetBNDecoderBlock import torch.nn.functional as F class Resnet(EncoderDecoder): def __init__(self, num_classes, num_channels, encoder_name): ...
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dsb2018_topcoders
dsb2018_topcoders-master/albu/src/pytorch_zoo/inception_resnet_v2.py
import torch import torch.nn as nn import torch.utils.model_zoo as model_zoo import os import sys __all__ = ['InceptionResNetV2', 'inceptionresnetv2'] model_urls = { 'inceptionresnetv2': 'http://webia.lip6.fr/~cadene/Downloads/inceptionresnetv2-d579a627.pth' } class BasicConv2d(nn.Module): def __init__(self...
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dsb2018_topcoders
dsb2018_topcoders-master/albu/src/pytorch_zoo/dpn.py
""" PyTorch implementation of DualPathNetworks Ported to PyTorch by [Ross Wightman](https://github.com/rwightman/pytorch-dpn-pretrained) Based on original MXNet implementation https://github.com/cypw/DPNs with many ideas from another PyTorch implementation https://github.com/oyam/pytorch-DPNs. This implementation is ...
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