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integral-human-pose
integral-human-pose-master/pytorch_projects/integral_human_pose/test.py
import os import pprint import copy import time import logging import torch from torch.utils.data import DataLoader # define project dependency import _init_paths # project dependence from common_pytorch.dataset.all_dataset import * from core.loader import hm36_Dataset, mpii_hm36_Dataset from common_pytorch.config_p...
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44.534653
144
py
integral-human-pose
integral-human-pose-master/pytorch_projects/integral_human_pose/_init_paths.py
import os import sys def add_path(path): if path not in sys.path: sys.path.insert(0, path) this_dir = os.path.dirname(__file__) add_path(os.path.join(this_dir, '..', '..', 'common')) add_path(os.path.join(this_dir, '..', 'common_pytorch')) add_path(os.path.join(this_dir, '..', '..')) add_path(os.path.join...
516
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integral-human-pose
integral-human-pose-master/pytorch_projects/integral_human_pose/train.py
import os import pprint import copy import time import matplotlib from torch.utils.data import DataLoader matplotlib.use('Agg') # define project dependency import _init_paths # common from common.speedometer import Speedometer from common.utility.logger import create_logger from common.utility.visualization import p...
8,382
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integral-human-pose
integral-human-pose-master/pytorch_projects/integral_human_pose/core/loader.py
import numpy as np import torch.utils.data as data from common.utility.image_processing_cv import get_single_patch_sample from common_pytorch.dataset.hm36 import from_mpii_to_hm36 class single_patch_Dataset(data.Dataset): def __init__(self, db, is_train, patch_width, patch_height, rect_3d_width, rect_3d_height...
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canary-in-a-coalmine
canary-in-a-coalmine-main/randomaug.py
# code in this file is adpated from rpmcruz/autoaugment # https://github.com/rpmcruz/autoaugment/blob/master/transformations.py import random import PIL, PIL.ImageOps, PIL.ImageEnhance, PIL.ImageDraw import numpy as np import torch from PIL import Image def ShearX(img, v): # [-0.3, 0.3] assert -0.3 <= v <= 0.3 ...
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canary-in-a-coalmine
canary-in-a-coalmine-main/utils.py
# -*- coding: utf-8 -*- '''Some helper functions for PyTorch, including: - get_mean_and_std: calculate the mean and std value of dataset. - msr_init: net parameter initialization. - progress_bar: progress bar mimic xlua.progress. ''' import os import sys import time import random import numpy as np import ...
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canary-in-a-coalmine
canary-in-a-coalmine-main/train.py
# -*- coding: utf-8 -*- ''' Train CIFAR10 with PyTorch and Vision Transformers! written by @kentaroy47, @arutema47 ''' from __future__ import print_function import torch import torch.nn as nn import torch.optim as optim import numpy as np import torchvision.transforms as transforms import os import argparse impor...
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canary-in-a-coalmine
canary-in-a-coalmine-main/gen_canary.py
import torch import torch.nn as nn import numpy as np import torchvision.transforms as transforms import os import argparse import copy import wandb import random from pynvml import * from utils import * from models.inferencemodel import * def generate_class_dict(args): dataset_class_dict = [[] for _ in range(...
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canary-in-a-coalmine
canary-in-a-coalmine-main/models/swin.py
# https://github.com/berniwal/swin-transformer-pytorch import torch from torch import nn, einsum import numpy as np from einops import rearrange, repeat class CyclicShift(nn.Module): def __init__(self, displacement): super().__init__() self.displacement = displacement def forward(self, x): ...
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canary-in-a-coalmine
canary-in-a-coalmine-main/models/cait.py
# https://github.com/lucidrains/vit-pytorch/blob/main/vit_pytorch/cait.py from random import randrange import torch from torch import nn, einsum import torch.nn.functional as F from einops import rearrange, repeat from einops.layers.torch import Rearrange # helpers def exists(val): return val is not None def d...
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canary-in-a-coalmine
canary-in-a-coalmine-main/models/resnet.py
# -*- coding: utf-8 -*- '''ResNet in PyTorch. For Pre-activation ResNet, see 'preact_resnet.py'. Reference: [1] Kaiming He, Xiangyu Zhang, Shaoqing Ren, Jian Sun Deep Residual Learning for Image Recognition. arXiv:1512.03385 ''' import torch import torch.nn as nn import torch.nn.functional as F class BasicBlock(...
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canary-in-a-coalmine
canary-in-a-coalmine-main/models/vgg.py
# -*- coding: utf-8 -*- '''VGG11/13/16/19 in Pytorch.''' import torch import torch.nn as nn cfg = { 'VGG11': [64, 'M', 128, 'M', 256, 256, 'M', 512, 512, 'M', 512, 512, 'M'], 'VGG13': [64, 64, 'M', 128, 128, 'M', 256, 256, 'M', 512, 512, 'M', 512, 512, 'M'], 'VGG16': [64, 64, 'M', 128, 128, 'M', 256, 256...
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canary-in-a-coalmine
canary-in-a-coalmine-main/models/vit_small.py
# https://github.com/lucidrains/vit-pytorch/blob/main/vit_pytorch/vit_for_small_dataset.py from math import sqrt import torch import torch.nn.functional as F from torch import nn from einops import rearrange, repeat from einops.layers.torch import Rearrange # helpers def pair(t): return t if isinstance(t, tuple...
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canary-in-a-coalmine
canary-in-a-coalmine-main/models/vit.py
# https://github.com/lucidrains/vit-pytorch/blob/main/vit_pytorch/vit.py import torch from torch import nn from einops import rearrange, repeat from einops.layers.torch import Rearrange # helpers def pair(t): return t if isinstance(t, tuple) else (t, t) # classes class PreNorm(nn.Module): def __init__(sel...
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canary-in-a-coalmine
canary-in-a-coalmine-main/models/wide_resnet.py
import torch import torch.nn as nn import torch.nn.init as init import torch.nn.functional as F from torch.autograd import Variable import sys import numpy as np def conv3x3(in_planes, out_planes, stride=1): return nn.Conv2d(in_planes, out_planes, kernel_size=3, stride=stride, padding=1, bias=True) def conv_init...
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canary-in-a-coalmine
canary-in-a-coalmine-main/models/simplevit.py
# from: https://github.com/lucidrains/vit-pytorch/blob/main/vit_pytorch/simple_vit.py import torch from torch import nn from einops import rearrange from einops.layers.torch import Rearrange # helpers def pair(t): return t if isinstance(t, tuple) else (t, t) def posemb_sincos_2d(patches, temperature = 10000, d...
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canary-in-a-coalmine
canary-in-a-coalmine-main/models/mlpmixer.py
# https://github.com/lucidrains/mlp-mixer-pytorch/blob/main/mlp_mixer_pytorch/mlp_mixer_pytorch.py from torch import nn from functools import partial from einops.layers.torch import Rearrange, Reduce pair = lambda x: x if isinstance(x, tuple) else (x, x) class PreNormResidual(nn.Module): def __init__(self, dim, f...
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canary-in-a-coalmine
canary-in-a-coalmine-main/models/inferencemodel.py
import torch import os import torch import torch.nn as nn from models import * from models.vit import ViT from models.convmixer import ConvMixer from models.utils import load_model class InferenceModel(nn.Module): def __init__(self, shadow_id, args): super().__init__() self.shadow_id = shadow_i...
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canary-in-a-coalmine
canary-in-a-coalmine-main/models/small_cnn.py
import torch import torch.nn as nn import torch.nn.functional as F class SmallNet(nn.Module): def __init__(self): super(SmallNet, self).__init__() self.conv1 = nn.Conv2d(1, 10, kernel_size=5) self.conv2 = nn.Conv2d(10, 20, kernel_size=5) self.conv2_drop = nn.Dropout2d() self...
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canary-in-a-coalmine
canary-in-a-coalmine-main/models/convmixer.py
# https://openreview.net/forum?id=TVHS5Y4dNvM import torch.nn as nn class Residual(nn.Module): def __init__(self, fn): super().__init__() self.fn = fn def forward(self, x): return self.fn(x) + x def ConvMixer(dim, depth, kernel_size=9, patch_size=7, n_classes=1000): retur...
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long-range-arena
long-range-arena-main/lra_benchmarks/image/train.py
# Copyright 2021 Google LLC # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # https://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, sof...
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long-range-arena
long-range-arena-main/lra_benchmarks/models/bigbird/bigbird_attention.py
# Copyright 2021 Google LLC # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # https://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, sof...
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long-range-arena
long-range-arena-main/lra_benchmarks/models/bigbird/bigbird.py
# Copyright 2021 Google LLC # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # https://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, sof...
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long-range-arena
long-range-arena-main/lra_benchmarks/models/linformer/linformer.py
# Copyright 2021 Google LLC # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # https://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, sof...
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long-range-arena
long-range-arena-main/lra_benchmarks/models/linformer/linformer_attention.py
# Copyright 2021 Google LLC # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # https://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, sof...
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long-range-arena
long-range-arena-main/lra_benchmarks/models/longformer/longformer_attention.py
# Copyright 2021 Google LLC # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # https://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, sof...
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long-range-arena
long-range-arena-main/lra_benchmarks/models/longformer/longformer.py
# Copyright 2021 Google LLC # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # https://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, sof...
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long-range-arena
long-range-arena-main/lra_benchmarks/models/sinkhorn_transformer/sinkhorn_transformer.py
# Copyright 2021 Google LLC # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # https://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, sof...
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long-range-arena
long-range-arena-main/lra_benchmarks/models/sinkhorn_transformer/sinkhorn_attention.py
# Copyright 2021 Google LLC # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # https://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, sof...
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long-range-arena-main/lra_benchmarks/models/layers/common_layers.py
# Copyright 2021 Google LLC # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # https://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, sof...
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long-range-arena
long-range-arena-main/lra_benchmarks/models/reformer/reformer.py
# Copyright 2021 Google LLC # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # https://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, sof...
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long-range-arena
long-range-arena-main/lra_benchmarks/models/reformer/reformer_attention.py
# Copyright 2021 Google LLC # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # https://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, sof...
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long-range-arena
long-range-arena-main/lra_benchmarks/models/performer/performer_attention.py
# Copyright 2021 Google LLC # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # https://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, sof...
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long-range-arena
long-range-arena-main/lra_benchmarks/models/performer/performer.py
# Copyright 2021 Google LLC # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # https://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, sof...
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long-range-arena
long-range-arena-main/lra_benchmarks/models/local/local.py
# Copyright 2021 Google LLC # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # https://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, sof...
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long-range-arena
long-range-arena-main/lra_benchmarks/models/local/local_attention.py
# Copyright 2021 Google LLC # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # https://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, sof...
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long-range-arena
long-range-arena-main/lra_benchmarks/models/sparse_transformer/sparse_attention.py
# Copyright 2021 Google LLC # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # https://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, sof...
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long-range-arena
long-range-arena-main/lra_benchmarks/models/sparse_transformer/sparse_transformer.py
# Copyright 2021 Google LLC # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # https://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, sof...
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long-range-arena
long-range-arena-main/lra_benchmarks/models/linear_transformer/linear_attention.py
# Copyright 2021 Google LLC # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # https://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, sof...
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long-range-arena
long-range-arena-main/lra_benchmarks/models/linear_transformer/linear_transformer.py
# Copyright 2021 Google LLC # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # https://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, sof...
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long-range-arena
long-range-arena-main/lra_benchmarks/models/transformer_tlb/transformer_tlb.py
# Copyright 2022 Google LLC # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # https://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, sof...
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long-range-arena
long-range-arena-main/lra_benchmarks/models/transformer/transformer.py
# Copyright 2021 Google LLC # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # https://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, sof...
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long-range-arena
long-range-arena-main/lra_benchmarks/models/synthesizer/synthesizer_attention.py
# Copyright 2021 Google LLC # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # https://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, sof...
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long-range-arena
long-range-arena-main/lra_benchmarks/models/synthesizer/synthesizer.py
# Copyright 2021 Google LLC # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # https://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, sof...
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long-range-arena
long-range-arena-main/lra_benchmarks/text_classification/train.py
# Copyright 2021 Google LLC # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # https://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, sof...
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long-range-arena
long-range-arena-main/lra_benchmarks/listops/train.py
# Copyright 2021 Google LLC # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # https://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, sof...
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long-range-arena
long-range-arena-main/lra_benchmarks/matching/train.py
# Copyright 2021 Google LLC # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # https://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, sof...
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long-range-arena
long-range-arena-main/lra_benchmarks/utils/data_utils.py
# Copyright 2021 Google LLC # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # https://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, sof...
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long-range-arena
long-range-arena-main/lra_benchmarks/utils/train_utils.py
# Copyright 2021 Google LLC # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # https://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, sof...
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ACLM
ACLM-main/src/test-dynamic_multilingual-mixup.py
import argparse import transformers import torch parser = argparse.ArgumentParser(allow_abbrev=False) parser.add_argument('--model', help='which model to use') parser.add_argument('--input_file','-i', help='input file to use') parser.add_argument('--sample_generation_mode', help='static/dynamic generation') parser.add_...
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ACLM
ACLM-main/src/generate-bert-attn.py
import torch from transformers import AutoModel,AutoTokenizer import numpy as np import re from tqdm import tqdm import sys import random import argparse from stopwordsiso import stopwords import pandas as pd import os stopwords_all = stopwords(["bn","de", "es","en","hi","ko","nl","ru","tr","zh"]) parser = argparse...
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ACLM
ACLM-main/src/flair_train.py
import flair import torch import argparse import os parser = argparse.ArgumentParser(description='Train flair model') parser.add_argument('--input_folder', '-i', help='Name of the input folder containing train, dev and test files') parser.add_argument('--output_folder', '-o', help='Name of the output folder') parser.a...
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ACLM
ACLM-main/src/flair_eval_equal.py
import flair import torch import argparse import os from tqdm import tqdm # os.environ['CUDA_VISIBLE-DEVICES']="0" parser = argparse.ArgumentParser(description='Train flair model') parser.add_argument('--input_folder', '-i', help='Name of the input folder containing train, dev and test files') parser.add_argument('--o...
6,072
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ACLM
ACLM-main/src/test-dynamic_multilingual.py
import argparse import transformers import torch parser = argparse.ArgumentParser(allow_abbrev=False) parser.add_argument('--model', help='which model to use') parser.add_argument('--input_file','-i', help='input file to use') parser.add_argument('--sample_generation_mode', help='static/dynamic generation') parser.add_...
9,965
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ACLM
ACLM-main/src/flair_infer.py
import flair import torch import argparse import os from tqdm import tqdm os.environ['CUDA_VISIBLE_DEVICES']="0" parser = argparse.ArgumentParser(description='Train flair model') parser.add_argument('--input_folder', '-i', help='Name of the input folder containing train, dev and test files') parser.add_argument('--out...
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ACLM
ACLM-main/src/bart_pretrain_dynamic_multilingual.py
import numpy as np import shutil import nltk import copy nltk.download('stopwords') nltk.download('punkt') from nltk.tokenize import sent_tokenize from transformers import AutoTokenizer, AutoModelForSeq2SeqLM from transformers import Seq2SeqTrainingArguments, Seq2SeqTrainer, PreTrainedTokenizerBase from datasets import...
14,880
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HGB
HGB-master/TC/HGAT/model/code/base.py
from __future__ import division from __future__ import print_function import time import argparse from networkx.algorithms.centrality import trophic from networkx.algorithms.cuts import edge_expansion import numpy as np import pickle as pkl from copy import deepcopy from random import shuffle import torch import torc...
14,413
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HGB
HGB-master/TC/HGAT/model/code/utils.py
import numpy as np import scipy.sparse as sp from random import shuffle import torch from tqdm import tqdm import os def load_data(path="../data/citeseer/", dataset="citeseer"): print('Loading {} dataset...'.format(dataset)) features_block = False # concatenate the feature spaces or not MULTI_LABEL ...
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HGB
HGB-master/TC/HGAT/model/code/layers.py
import math import torch from torch.nn.parameter import Parameter from torch.nn.modules.module import Module import torch.nn.functional as F from torch import nn class MyGraphConvolution(Module): def __init__(self, in_features, out_features, bias=True): super(MyGraphConvolution, self).__init__() s...
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HGB
HGB-master/TC/HGAT/model/code/models.py
import math import torch import torch.nn as nn import torch.nn.functional as F from layers import * from torch.nn.parameter import Parameter from dgl.nn.pytorch import GraphConv, GATConv from functools import reduce from utils import dense_tensor_to_sparse class weighted_GCN(nn.Module): def __init__(self, ...
8,431
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HGB-master/TC/HGAT/model/code/train.py
from __future__ import division from __future__ import print_function import time import argparse from networkx.algorithms.centrality import trophic from networkx.algorithms.cuts import edge_expansion import numpy as np import pickle as pkl from copy import deepcopy from random import shuffle import torch import torc...
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HGB-master/TC/HGAT/model/code/baseline/new_main.py
""" define model """ weight_size = eval(args.layer_size) num_layers = len(weight_size) - 2 heads = [args.heads] * num_layers + [1] model = myGAT(config['n_users']+config['n_entities'], args.kge_size, config['n_relations']*2+1, args.embed_size, weight_size[-2], weight_size[-1], num_layers, heads, F.elu, 0.1, 0., 0.05, F...
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HGB-master/TC/HGAT/model/code/baseline/GNN.py
import torch import torch.nn as nn import dgl from dgl.nn.pytorch import GraphConv import dgl.function as fn from dgl.nn.pytorch import edge_softmax, GATConv from .conv import myGATConv class myGAT(nn.Module): def __init__(self, g, edge_dim, num_etypes, ...
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HGB-master/TC/HGAT/model/code/baseline/run.py
import sys sys.path.append('../../') import time import argparse import torch import torch.nn.functional as F import numpy as np from utils.pytorchtools import EarlyStopping from utils.data import load_data from GNN import GCN, GAT, RGAT import dgl def sp_to_spt(mat): coo = mat.tocoo() values = coo.data ...
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HGB-master/TC/HGAT/model/code/baseline/conv.py
"""Torch modules for graph attention networks(GAT).""" # pylint: disable= no-member, arguments-differ, invalid-name import torch as th from torch import nn from dgl import function as fn from dgl.nn.pytorch import edge_softmax from dgl._ffi.base import DGLError from dgl.nn.pytorch.utils import Identity from dgl.utils ...
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HGB-master/TC/HGAT/model/code/baseline/run_multi.py
import sys sys.path.append('../../') import time import argparse import torch import torch.nn as nn import torch.nn.functional as F import numpy as np from utils.pytorchtools import EarlyStopping from utils.data import load_data #from utils.tools import index_generator, evaluate_results_nc, parse_minibatch from GNN i...
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HGB-master/TC/HGAT/model/code/baseline/run_new.py
import sys sys.path.append('../../') import time import argparse import torch import torch.nn.functional as F import numpy as np from utils.pytorchtools import EarlyStopping from utils.data import load_data #from utils.tools import index_generator, evaluate_results_nc, parse_minibatch from GNN import myGAT import dgl...
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HGB-master/TC/HGAT/model/code/baseline/utils/pytorchtools.py
import numpy as np import torch class EarlyStopping: """Early stops the training if validation loss doesn't improve after a given patience.""" def __init__(self, patience, verbose=False, delta=0, save_path='checkpoint.pt'): """ Args: patience (int): How long to wait after last time...
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HGB-master/TC/HGAT/model/code/baseline/utils/tools.py
import torch import dgl import numpy as np from sklearn.model_selection import train_test_split from sklearn.metrics import f1_score, normalized_mutual_info_score, adjusted_rand_score from sklearn.cluster import KMeans from sklearn.svm import LinearSVC def idx_to_one_hot(idx_arr): one_hot = np.zeros((idx_arr.shap...
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HGB-master/LP/MAGNN/run_LastFM_GNN.py
import time import argparse import torch import torch.nn.functional as F import numpy as np from sklearn.metrics import roc_auc_score, average_precision_score from utils.pytorchtools import EarlyStopping from utils.data import load_LastFM_data from utils.tools import index_generator, parse_minibatch_LastFM from scipy...
16,755
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HGB-master/LP/MAGNN/GNN.py
import torch import torch.nn as nn import dgl from dgl.nn.pytorch import GraphConv import dgl.function as fn from dgl.nn.pytorch import edge_softmax, GATConv class GAT(nn.Module): def __init__(self, g, num_layers, in_dim, num_hidden, ...
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HGB-master/LP/MAGNN/run_LastFM.py
import time import argparse import torch import torch.nn.functional as F import numpy as np from sklearn.metrics import roc_auc_score, average_precision_score from utils.pytorchtools import EarlyStopping from utils.data import load_LastFM_data from utils.tools import index_generator, parse_minibatch_LastFM from model...
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HGB-master/LP/MAGNN/utils/pytorchtools.py
import numpy as np import torch class EarlyStopping: """Early stops the training if validation loss doesn't improve after a given patience.""" def __init__(self, patience, verbose=False, delta=0, save_path='checkpoint.pt'): """ Args: patience (int): How long to wait after last time...
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HGB-master/LP/MAGNN/utils/tools.py
import torch import dgl import numpy as np from sklearn.model_selection import train_test_split from sklearn.metrics import f1_score, normalized_mutual_info_score, adjusted_rand_score from sklearn.cluster import KMeans from sklearn.svm import LinearSVC def idx_to_one_hot(idx_arr): one_hot = np.zeros((idx_arr.shap...
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HGB-master/LP/MAGNN/model/MAGNN_lp.py
import torch import torch.nn as nn import numpy as np from model.base_MAGNN import MAGNN_ctr_ntype_specific # for link prediction task class MAGNN_lp_layer(nn.Module): def __init__(self, num_metapaths_list, num_edge_type, etypes_lists, in_dim, ...
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HGB-master/LP/MAGNN/model/MAGNN_nc_mb.py
import torch import torch.nn as nn import numpy as np from model.base_MAGNN import MAGNN_ctr_ntype_specific # support for mini-batched forward # only support one layer for one ctr_ntype class MAGNN_nc_mb_layer(nn.Module): def __init__(self, num_metapaths, num_edge_type, ...
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HGB-master/LP/MAGNN/model/MAGNN_nc.py
import torch import torch.nn as nn import torch.nn.functional as F import numpy as np from model.base_MAGNN import MAGNN_ctr_ntype_specific fc_switch = False # multi-layer support class MAGNN_nc_layer(nn.Module): def __init__(self, num_metapaths_list, num_edge_type, ...
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HGB-master/LP/MAGNN/model/base_MAGNN.py
import torch import torch.nn as nn import torch.nn.functional as F import dgl.function as fn from dgl.nn.pytorch import edge_softmax class MAGNN_metapath_specific(nn.Module): def __init__(self, etypes, out_dim, num_heads, rnn_type='gru', ...
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HGB-master/LP/RGCN-WN18/code/gnn_link_predict.py
import dgl from model import GCN, GAT from utils import load_data from utils import EarlyStopping import utils import numpy as np import torch.nn as nn import torch from collections import defaultdict import argparse import time import sys sys.path.append('../../') def sp_to_spt(mat): coo = mat.tocoo() value...
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HGB-master/LP/RGCN-WN18/code/utils.py
from sklearn.metrics import ( auc, f1_score, precision_recall_curve, roc_auc_score) import scipy.sparse as sp from torch.utils.data import Dataset import torch as th import numpy as np class EarlyStopping: """Early stops the training if validation loss doesn't improve after a given patience.""" def __ini...
3,241
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111
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HGB
HGB-master/LP/RGCN-WN18/code/model.py
import torch as th import torch.nn as nn from dgl.nn.pytorch import GraphConv, GATConv, RelGraphConv import torch.nn.functional as F class BaseRGCN(nn.Module): def __init__(self, in_dims, h_dim, out_dim, num_rels, num_bases, num_hidden_layers=1, dropout=0, use_self_loop=False): ...
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HGB-master/LP/RGCN-WN18/code/link_predict.py
import dgl from model import BaseRGCN from utils import load_data from utils import EarlyStopping import utils import numpy as np import torch.nn.functional as F import torch.nn as nn import torch from collections import defaultdict import argparse import time import sys from dgl.nn.pytorch import RelGraphConv sys.pat...
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HGB-master/LP/RGCN/gnn_link_predict.py
""" Modeling Relational Data with Graph Convolutional Networks Paper: https://arxiv.org/abs/1703.06103 Code: https://github.com/MichSchli/RelationPrediction Difference compared to MichSchli/RelationPrediction * Report raw metrics instead of filtered metrics. * By default, we use uniform edge sampling instead of neighbo...
9,318
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HGB-master/LP/RGCN/utils.py
""" Utility functions for link prediction Most code is adapted from authors' implementation of RGCN link prediction: https://github.com/MichSchli/RelationPrediction """ import traceback from _thread import start_new_thread from functools import wraps import numpy as np import torch from torch.multiprocessing import Qu...
14,937
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HGB-master/LP/RGCN/model.py
import torch as th from torch._C import Graph import torch.nn as nn import torch as th from torch import nn import torch.nn.functional as F from dgl.nn.pytorch import GATConv, GraphConv from torch.nn.modules import activation class DisMult(th.nn.Module): def __init__(self, rel_num, dim): super(DisMult, se...
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HGB-master/LP/RGCN/GNN.py
import torch as th from torch import nn from torch_geometric.nn import GCNConv, GATConv import torch.nn.functional as F class DisMult(th.nn.Module): def __init__(self, rel_num, dim): super(DisMult, self).__init__() self.dim = dim self.weights = nn.Parameter(th.FloatTensor(size=(rel_num, dim,...
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HGB-master/LP/RGCN/HomGNN.py
""" Modeling Relational Data with Graph Convolutional Networks Paper: https://arxiv.org/abs/1703.06103 Code: https://github.com/MichSchli/RelationPrediction Difference compared to MichSchli/RelationPrediction * Report raw metrics instead of filtered metrics. * By default, we use uniform edge sampling instead of neighbo...
11,245
41.760456
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HGB
HGB-master/LP/RGCN/link_predict.py
""" Modeling Relational Data with Graph Convolutional Networks Paper: https://arxiv.org/abs/1703.06103 Code: https://github.com/MichSchli/RelationPrediction Difference compared to MichSchli/RelationPrediction * Report raw metrics instead of filtered metrics. * By default, we use uniform edge sampling instead of neighbo...
10,651
38.895131
103
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HGB
HGB-master/LP/HetGNN/code/tools.py
import torch import torch.nn as nn import torch.nn.functional as F from torch.autograd import Variable from args import read_args import numpy as np import string import re import math args = read_args() class HetAgg(nn.Module): def __init__(self, args, feature_list, a_neigh_list_train, p_neigh_list_train, v_neigh_l...
13,023
37.877612
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HGB-master/LP/HetGNN/code/HetGNN.py
import torch import torch.optim as optim import data_generator import tools from args import read_args from torch.autograd import Variable import numpy as np import random torch.set_num_threads(2) import os os.environ['CUDA_VISIBLE_DEVICES']='0' class model_class(object): def __init__(self, args): super(model_clas...
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HGB-master/LP/HetGNN/code/homoGNN.py
import numpy as np import torch as th from torch_geometric.data import Data from torch import nn from torch_geometric.nn import GCNConv, SAGEConv, TopKPooling, GATConv import torch.nn.functional as F import re import random import csv import argparse import datetime from sklearn.metrics import f1_score, roc_auc_score i...
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HGB-master/LP/benchmark/methods/baseline/GNN.py
import torch import torch.nn as nn import dgl from dgl.nn.pytorch import GraphConv import dgl.function as fn from dgl.nn.pytorch import edge_softmax, GATConv from conv import myGATConv class DistMult(nn.Module): def __init__(self, num_rel, dim): super(DistMult, self).__init__() self.W = nn.Paramet...
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HGB-master/LP/benchmark/methods/baseline/conv.py
"""Torch modules for graph attention networks(GAT).""" # pylint: disable= no-member, arguments-differ, invalid-name import torch as th from torch import nn from dgl import function as fn from dgl.nn.pytorch import edge_softmax from dgl._ffi.base import DGLError from dgl.nn.pytorch.utils import Identity from dgl.utils ...
6,486
44.363636
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HGB-master/LP/benchmark/methods/baseline/run_dist.py
import sys sys.path.append('../../') import time import argparse import os from collections import defaultdict import torch import torch.nn as nn import torch.nn.functional as F import numpy as np from utils.pytorchtools import EarlyStopping from utils.data import load_data from GNN import myGAT import dgl import os ...
13,302
47.199275
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HGB-master/LP/benchmark/methods/baseline/run_new.py
import sys sys.path.append('../../') import time import argparse import os from collections import defaultdict import torch import torch.nn as nn import torch.nn.functional as F import numpy as np from utils.pytorchtools import EarlyStopping from utils.data import load_data from GNN import myGAT import dgl import os ...
12,386
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HGB-master/LP/benchmark/methods/baseline/utils/pytorchtools.py
import numpy as np import torch class EarlyStopping: """Early stops the training if validation loss doesn't improve after a given patience.""" def __init__(self, patience, verbose=False, delta=0, save_path='checkpoint.pt'): """ Args: patience (int): How long to wait after last time...
1,824
36.244898
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HGB-master/LP/benchmark/methods/baseline/utils/tools.py
import torch import dgl import numpy as np from sklearn.model_selection import train_test_split from sklearn.metrics import f1_score, normalized_mutual_info_score, adjusted_rand_score from sklearn.cluster import KMeans from sklearn.svm import LinearSVC def idx_to_one_hot(idx_arr): one_hot = np.zeros((idx_arr.shap...
11,404
46.128099
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HGB-master/LP/benchmark/methods/MAGNN/run_DBLP.py
import time import argparse import torch import torch.nn.functional as F import numpy as np from utils.pytorchtools import EarlyStopping from utils.data import load_DBLP_data from utils.tools import index_generator, evaluate_results_nc, parse_minibatch from model import MAGNN_nc_mb # Params out_dim = 4 dropout_rate ...
10,569
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HGB-master/LP/benchmark/methods/MAGNN/run_IMDB.py
import time import argparse import torch.nn.functional as F import torch.sparse import numpy as np import dgl from utils.pytorchtools import EarlyStopping from utils.data import load_IMDB_data from utils.tools import evaluate_results_nc from model import MAGNN_nc # Params out_dim = 3 dropout_rate = 0.5 lr = 0.005 we...
8,734
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HGB-master/LP/benchmark/methods/MAGNN/run_LastFM.py
import sys sys.path.append('../../') import time import argparse import torch import torch.nn.functional as F import numpy as np from sklearn.metrics import roc_auc_score, average_precision_score from utils.pytorchtools import EarlyStopping from utils.data import load_LastFM_data from utils.tools import index_generat...
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