trained_models/KIRC/model_parameter_KIRC.json

{
    "use_bulk": true,
    "pred_celltype": true,
    "bidirectional": false,
    "retrain_cellprop_only": false,
    "use_context_loss": true,
    "pixel_size": 0.5,
    "num_workers": 4,
    "batch_size": 4,
    "img_emb_dim": 1536,
    "patch_size": [3584, 896, 224],
    "mse_weight": 10,
    "prop_weight": 0.1,
    "focal_gamma": 0.5,
    "num_epochs": 600,
    "exp_epochs": 400,
    "lr": 0.001,
    "lr_prop": 0.001,
    "weight_decay": 0.00001,
    "stepLR_step_exp": 200,
    "stepLR_gamma_exp": 0.1,
    "stepLR_step_prop": 50,
    "stepLR_gamma_prop": 0.5,
    "gene_list_file": "KIRC_gene.csv",
    "gene_norm_factor_file": "KIRC_gene_normalize_factor.csv",
    "celltype_file": "KIRC_cell_types.csv"
}