File size: 717 Bytes
0153e9b | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 | {
"use_bulk": true,
"pred_celltype": true,
"bidirectional": false,
"retrain_cellprop_only": false,
"use_context_loss": true,
"pixel_size": 0.5,
"num_workers": 4,
"batch_size": 4,
"img_emb_dim": 1536,
"patch_size": [3584, 896, 224],
"mse_weight": 10,
"prop_weight": 0.1,
"focal_gamma": 0.5,
"num_epochs": 600,
"exp_epochs": 400,
"lr": 0.001,
"lr_prop": 0.001,
"weight_decay": 0.00001,
"stepLR_step_exp": 200,
"stepLR_gamma_exp": 0.1,
"stepLR_step_prop": 50,
"stepLR_gamma_prop": 0.5,
"gene_list_file": "KIRC_gene.csv",
"gene_norm_factor_file": "KIRC_gene_normalize_factor.csv",
"celltype_file": "KIRC_cell_types.csv"
} |