Datasets:
name stringlengths 5 9 | aa_seq stringlengths 40 2.08k | label stringlengths 181 30.6k |
|---|---|---|
seq_0 | QNLLKNLAASLGRKPFVADKQGVYRLTIDKHLVMLAPHGSELVLRTPIDAPMLREGNNVNVTLLRSLMQQALAWAKRYPQTLVLDDCGQLVLEARLRLQELDTHGLQEVINKQLALLEHLIPQLTP | [array([0, 0], dtype=int64) array([0, 1], dtype=int64)
array([0, 2], dtype=int64) array([0, 3], dtype=int64)
array([0, 4], dtype=int64) array([ 0, 17], dtype=int64)
array([ 0, 21], dtype=int64) array([ 0, 23], dtype=int64)
array([ 0, 34], dtype=int64) array([ 0, 36], dtype=int64)
array([1, 1], dtype=int64) array([... |
seq_1 | LYFQGAMALEEIKNGTDISTLDIRKFNLNINNVSVLSKSQSVDQFHLSNPHYEYLSGGAYPGEMENFTLKVDKSKKQDQVFENPLSLKFTNIGTVNGKQVDAYLNFNKVTLHYLNTAQAESEMNSAQKSTVEFFSISELWESNAFEIGNVPYVDANHDYIMNKAFWIDADVTAEIRYADGTETDLKLVMKPTDIDAIDANNLKETFYVKNYQNDVNLRLMNNANVLVQEEASDRTSWIATQITGGSYNENNVSGLALRSNSNSMNFGYSSTETCSAVFGLYIEKIDPRPVLEVDPAEIPAKDGQDVTYKATFKVPVPGKD... | [array([0, 0], dtype=int64) array([0, 1], dtype=int64)
array([0, 2], dtype=int64) ... array([424, 424], dtype=int64)
array([424, 425], dtype=int64) array([425, 425], dtype=int64)] |
seq_2 | MYLEKLQQWRYATADFSGAHITDDVLDKLLNTTRLTASSYGLQPYCTLVIRNKGLREQLVNHSFGQQKVADSSALVIFAAKTGAVADIVDPYISELSQQRQLTNEEAENTRNYFTQKLQAMSAATRKEWAVRQAYIGLGTFLLAAAELEVDSCPMEGIEHDAYDNILSLKDLGLSTVFACPVGYRSEADTTQFQKKVRQPLSRFKVVL | [array([0, 0], dtype=int64) array([0, 1], dtype=int64)
array([0, 2], dtype=int64) ... array([206, 206], dtype=int64)
array([206, 207], dtype=int64) array([207, 207], dtype=int64)] |
seq_3 | PLMLDTAPNAFDDQYEGCVNKMEEKAPLLLQEDFNMNAKLKVAWEEAKKRWNNIKPSRSYPKGFNDFHGTALVAYTGSIAVDFNRAVREFKENPGQFHYKAFHYYLTRALQLLSNGDCHSVYRGTKTRFHYTGAGSVRFGQFTSSSLSKKVAQSQEFFSDHGTLFIIKTCLGVYIKEFSFRPDQEEVLIPGYEVYQKVRTQGYNEIFLDSPKRKKSNYNCLYS | [array([0, 0], dtype=int64) array([0, 1], dtype=int64)
array([0, 2], dtype=int64) ... array([221, 221], dtype=int64)
array([221, 222], dtype=int64) array([222, 222], dtype=int64)] |
seq_4 | RPFRPFQSQYRWPGVDLLAYKEESAPFRSVTRQVLFSGNGLTGELRYFEVGPGGHSTLERHQHAHGVMILKGRGHAMVGRAVSAVAPYDLVTIPGWSWHQFRAPADEALGFLCMVNAERDKPQLPTEADLAMLRADDAVAAFLDGLAG | [array([0, 0], dtype=int64) array([0, 1], dtype=int64)
array([0, 2], dtype=int64) array([0, 3], dtype=int64)
array([1, 1], dtype=int64) array([1, 2], dtype=int64)
array([2, 2], dtype=int64) array([2, 3], dtype=int64)
array([2, 4], dtype=int64) array([3, 3], dtype=int64)
array([3, 4], dtype=int64) array([4, 4], dty... |
seq_5 | EAIKKLVGLQAKTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESYVDESMISGEPVPVLKSKGDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMG | [array([0, 0], dtype=int64) array([0, 1], dtype=int64)
array([0, 3], dtype=int64) array([0, 4], dtype=int64)
array([1, 1], dtype=int64) array([1, 2], dtype=int64)
array([1, 3], dtype=int64) array([1, 4], dtype=int64)
array([1, 5], dtype=int64) array([2, 2], dtype=int64)
array([2, 3], dtype=int64) array([2, 4], dty... |
seq_6 | STHFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVPLALRSQELWYELEKETHHKIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANGSYTADKLIVSMGAWNSKLLSKLNLDIPLQPYRQVVGFFESDESKYSNDIDFPGFMVEVPNGIYYGFPSFGGCGLKLGYHTFGQKIDPDTINREFGVYPEDESNLRAFLEEYMPGANGELKRGAVCMYTKT... | [array([0, 0], dtype=int64) array([0, 1], dtype=int64)
array([1, 1], dtype=int64) ... array([385, 385], dtype=int64)
array([385, 386], dtype=int64) array([386, 386], dtype=int64)] |
seq_7 | GGFAQIYTVKAGDSIYSIAKQFRIDAGKIIRANELPNPNQLVIGQSMVIPINGTYYTVKAGDTIWKVGRKLGVSYQAIANANNVSVTAPLTPGRRILIPPSPNKRNGEFLGYVETSNRKITPQTEKMINQNAKYLTYLGPANFEVQKDGSLKAPPLNNLGSIAKENDVIFLMVLANIENGAFSDEVGRAILNNKDVQDTLLNNIVKTAKEQNFRDIHFDFEFLRPADKEAYIAFLQKAKKRLQDEQLLMSVALAPKTSRDQKGKWYEAHDYKAIGEIANFVVPMTYEGGPPMAVSPIGPVRDVLEYAVSEIPSSKIIMGQ... | [array([0, 0], dtype=int64) array([0, 1], dtype=int64)
array([0, 2], dtype=int64) ... array([427, 427], dtype=int64)
array([427, 428], dtype=int64) array([428, 428], dtype=int64)] |
seq_8 | EPLAAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFYHGIQPLKAGFHPLTIDCRYNLTFRQAGKKENLY | [array([0, 0], dtype=int64) array([0, 1], dtype=int64)
array([1, 1], dtype=int64) ... array([205, 205], dtype=int64)
array([205, 206], dtype=int64) array([206, 206], dtype=int64)] |
seq_9 | AWVDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAFYVFFAEDVGSNKGAIIGLMVGGVVIGGEKGAGTALTVKAA | [array([0, 0], dtype=int64) array([0, 1], dtype=int64)
array([0, 2], dtype=int64) array([ 0, 23], dtype=int64)
array([ 0, 24], dtype=int64) array([ 0, 25], dtype=int64)
array([ 0, 26], dtype=int64) array([ 0, 27], dtype=int64)
array([ 0, 28], dtype=int64) array([ 0, 95], dtype=int64)
array([ 0, 97], dtype=int64) a... |
seq_10 | YDRKLFAKLRKLRKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAHVDGD | [array([0, 0], dtype=int64) array([0, 1], dtype=int64)
array([0, 2], dtype=int64) array([0, 5], dtype=int64)
array([ 0, 36], dtype=int64) array([ 0, 37], dtype=int64)
array([1, 1], dtype=int64) array([1, 2], dtype=int64)
array([1, 3], dtype=int64) array([1, 4], dtype=int64)
array([1, 5], dtype=int64) array([ 1, 36... |
seq_11 | MKRLSLREAWPYLKDLQQDPLAVLLAWGRAHPRLFLPLPRFPLALIFDPEGVEGALLAEGTTKATFQYRALSRLTGRGLLTDWGESWKEARKALKDPFLPKNVRGYREAMEEEARAFFGEWRGEERDLDHEMLALSLRLLGRALFGKPLSPSLAEHALKALDRIMAQTRSPLALLDLAAEARFRKDRGALYREAEALIVHPPLSHLPRERALSEAVTLLVAGHETVASALTWSFLLLSHRPDWQKRVAESEEAALAAFQEALRLYPPAWILTRRLERPLLLGEDRLPPGTTLVLSPYVTQRLHFPDGEAFRPERFLEERG... | [array([0, 0], dtype=int64) array([0, 1], dtype=int64)
array([0, 2], dtype=int64) ... array([383, 383], dtype=int64)
array([383, 384], dtype=int64) array([384, 384], dtype=int64)] |
seq_12 | MIYTVTFNPSIDYVIFTNDFKIDGLNRATATYKFAGGKGINVSRVLKTLDVESTALGFAGGFPGKFIIDTLNNSAIQSNFIEVDEDTRINVKLKTGQETEINAPGPHITSTQFEQLLQQIKNTTSEDIVIVAGSVPSSIPSDAYAQIAQITAQTGAKLVVDAEKELAESVLPYHPLFIKPNKDELEVMFNTTVNSDADVIKYGRLLVDKGAQSVIVSLGGDGAIYIDKEISIKAVNPQGKVVNTVGSGDSTVAGMVAGIASGLSIEKAFQQAVACGTATAFDEDLATRDAIEKIKSQVTISVLDGE | [array([0, 0], dtype=int64) array([0, 1], dtype=int64)
array([0, 2], dtype=int64) ... array([304, 304], dtype=int64)
array([304, 305], dtype=int64) array([305, 305], dtype=int64)] |
seq_13 | CTCVPPHPQTAFCNSDLVIRAKFVQTTLYQRYEIKMTKMYKGFIRFVYTPAMESVCGYFHRSHNRSEEFLIAGKLQDGLLHITTCSFVAPWNSLSLAQRRGFTKTYTVGCEECTVFPCLSIPCKLQSGTHCLWTDQLLQGSEKGFQSRHLACLPREPGLCTWQS | [array([0, 0], dtype=int64) array([0, 1], dtype=int64)
array([0, 2], dtype=int64) array([ 0, 52], dtype=int64)
array([ 0, 53], dtype=int64) array([ 0, 54], dtype=int64)
array([ 0, 55], dtype=int64) array([ 0, 56], dtype=int64)
array([ 0, 82], dtype=int64) array([ 0, 83], dtype=int64)
array([ 0, 84], dtype=int64) a... |
seq_14 | RIRLTKDGRCIITCKTVEVYADESMTVDTPRTTFTGDVEIQKGLGVKGKSQFDSNITAPDAIINGKSTDKH | [array([0, 0], dtype=int64) array([0, 1], dtype=int64)
array([0, 2], dtype=int64) array([ 0, 10], dtype=int64)
array([ 0, 11], dtype=int64) array([ 0, 12], dtype=int64)
array([ 0, 13], dtype=int64) array([1, 1], dtype=int64)
array([1, 2], dtype=int64) array([1, 3], dtype=int64)
array([1, 9], dtype=int64) array([ 1... |
seq_15 | GHITFAASPAIALAALPLALASFAREFPDVTVNVRDGMYPAVSPQLRDGTLDFALTAAHKHDIDTDLEAQPLYVSDVVIVGQRQHPMANATRLAELQECRWAFSSAPRGPGAIIRNAFARYGLPEPKLGLVCESFLALPGVVAHSDLLTTMPRTLYERNAFKDQLCSIPLQDALPNPTIYVLRRHDLPVTPAAAGLIRWIQHHAL | [array([0, 0], dtype=int64) array([0, 1], dtype=int64)
array([0, 2], dtype=int64) ... array([203, 203], dtype=int64)
array([203, 204], dtype=int64) array([204, 204], dtype=int64)] |
seq_16 | MMKIAILDDYQNVVRGLNAFQCLQGHDVTVFNDSVSDETVLIERLKPFEALVLIRERTPITENLLAHLPNLKLISQTGKVSNHIDVPLCERYGVTVLEGIGSPVAPAELCWSLILAASRHLPSYIEQLHAGHWQQNGGLGLGRTLSGRTLGIWGLGKIGQRIAQFGHVFGMPILVWGSEASRQKALELGYQAAADKAEFFAKADVLSLHLRLNDATRGIVTKQDLLAMKPDSLFVNTSRAELVESGALYSVMQANPMRQAAVDVYENEPALPNNEPLLSLPNVLCAPHLGYVEKNSYEIYFQAAFENVVKFAHSA | [array([0, 0], dtype=int64) array([0, 1], dtype=int64)
array([ 0, 24], dtype=int64) ... array([313, 313], dtype=int64)
array([313, 314], dtype=int64) array([314, 314], dtype=int64)] |
seq_17 | MPVKKQEAHRALELLEDYHARLSEPQDRALRIAIERVIRIFKSRLFQALLDIQEFYELTLLDDSKSIQQKTAETLQIATKWEKDGQAVKIADFI | [array([0, 0], dtype=int64) array([0, 1], dtype=int64)
array([0, 2], dtype=int64) array([1, 1], dtype=int64)
array([1, 2], dtype=int64) array([1, 3], dtype=int64)
array([1, 6], dtype=int64) array([1, 9], dtype=int64)
array([2, 2], dtype=int64) array([2, 3], dtype=int64)
array([3, 3], dtype=int64) array([3, 4], dty... |
seq_18 | MILLDTNVISEPLRPQPNERVVAWLDSLILEDVYLSAITVAELRLGVALLLNGKKKNVLHERLEQSILPLFAGRILPFDEPVAAIYAQIRSYAKTHGKEIAAADGYIAATAKQHSLTVATRDTGSFFAADVAVFNPWHL | [array([0, 0], dtype=int64) array([0, 1], dtype=int64)
array([0, 2], dtype=int64) array([ 0, 31], dtype=int64)
array([ 0, 32], dtype=int64) array([ 0, 33], dtype=int64)
array([ 0, 113], dtype=int64) array([ 0, 114], dtype=int64)
array([ 0, 115], dtype=int64) array([ 0, 116], dtype=int64)
array([1, 1], dtype=in... |
End of preview. Expand in Data Studio
Dataset Summary
Contact map prediction aims to determine whether two residues, $i$ and $j$, are in contact or not, based on their distance with a certain threshold ($<$8 Angstrom). This task is an important part of the early Alphafold version for structural prediction.
Data Fields
seq: a string containing the protein sequence
label: a string containing the contact label of each residue pair.
Original Dataset Name: biomap-research/contact_prediction_binary
Original Author / Organization: Biomap
Original URL: https://huggingface.co/datasets/biomap-research/contact_prediction_binary
Original License: Apache License 2.0
No changes were made to the data except for the column name. All credit and rights belong to the original authors.
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