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Datasets:
AI4Protein
/
EC_AlphaFold2

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Text Classification
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csv
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10K - 100K
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Tags:
protein
downstream task
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name
stringlengths
13
19
aa_seq
stringlengths
4
638
foldseek_seq
stringlengths
4
638
ss8_seq
stringlengths
4
638
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stru_token_20
stringlengths
108
10.1k
stru_token_128
stringlengths
106
10.8k
stru_token_512
stringlengths
125
12.4k
stru_token_1024
stringlengths
124
12.9k
stru_token_2048
stringlengths
149
15k
stru_token_4096
stringlengths
156
14.9k
1s4d_A-P21631
MIDDLFAGLPALEKGSVWLVGAGPGDPGLLTLHAANALRQADVIVHDALVNEDCLKLARPGAVLEFAGKRGGKPSPKQRDISLRLVELARAGNRVLRLKGGDPFVFGRGGEEALTLVEHQVPFRIVPGITAGIGGLAYAGIPVTHREVNHAVTFLTGHDSSGLVPDRINWQGIASGSPVIVMYMAMKHIGAITANLIAGGRSPDEPVAFVCNAATPQQAVLETTLARAEADVAAAGLEPPAIVVVGEVVRLRAALDWIGALDGRKLAADPFANRILRNPA
DVVVLCVPPDALFWLAEEEAECELEDNVQGDPVLLNLQCHFQEEEEEPRRHVVNNVSHHPNRHYHYQYDDPPDDGQDVVNVLVVSNVRSVVGTSYYHYYYAFCPQPVCVVVSVVSCVVSVGHYDYHTGHHCLAQLVLLLQFHQDDPLWDDFEDEEECDDPVRHRPPPDPLLCCLVPHQKYKYFPNLVPLLVSLVSSVVSPDDQFWKKKKWASGPDPPTDIDIGGSVCVNVVCVVVVDDDPIMMMTHPSVLSSLQGNVVVVVVPRDRDPCSVPVDPPPDDD
LHHHHHTTSLLLLTTEEEEEELBSSLGGGLLHHHHHHHHHLSEEEELTTSLHHHHTTSLTTLEEEELSLLTTSLLLLHHHHHHHHHHHHHTTLEEEEEESBLTTSSSLHHHHHHHHHHTTLLEEEELLLLIIIIIHHHTTLLSLLTTTLSLLEEEESSLTTSSLLTTLLHHHHHHHLSSEEEESLGGGHHHHHHHHHHTTLLTTLEEEEEESTTSTTLEEEEEETTTHHHHHHHHTLLSSEEEEESGGGGGHHHHLHHHHHTTLLLLSLTTTTSLLLLLL
360
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[195, 354, 354, 558, 1944, 750, 1329, 1337, 1901, 754, 1899, 1660, 273, 683, 621, 1232, 554, 1417, 516, 516, 1890, 785, 1652, 1204, 932, 1198, 479, 1002, 228, 228, 1334, 2027, 1184, 1612, 1865, 470, 941, 442, 17, 941, 785, 1890, 1393, 1096, 1803, 1699, 1349, 525, 662, 884, 181, 1362, 680, 1491, 1878, 518, 1824, 2006, 1...
[778, 3555, 3555, 2132, 3702, 1423, 1599, 3251, 1537, 937, 3210, 3127, 3110, 588, 1077, 866, 1564, 245, 2809, 2497, 3110, 1470, 4058, 54, 1069, 1143, 2021, 114, 54, 2323, 652, 1843, 3388, 512, 3102, 3923, 3733, 3621, 460, 1842, 1470, 743, 3876, 3204, 813, 887, 457, 1464, 981, 1554, 141, 2246, 3413, 158, 333, 1358, 1795...
3ahq_A-Q96HE7
HGEEQPPETAAQRCFCQVSGYLDDCTCDVETIDRFNNYRLFPRLQKLLESDYFRYYKVNLKRPCPFWNDISQCGRRDCAVKPCQSDEVPDGIKSASYKYSEEANNLIEECEQAERLGAVDESLSEETQKAVLQWTKHDDSSDNFCEADDIQSPEAEYVDLLLNPERYTGYKGPDAWKIWNVIYEENCFKPQTIKRPLNPLASGQGTSEENTFYSWLEGLCVEKRAFYRLISGLHASINVHLSARYLLQETWLEKKWGHNITEFQQRFDGILTEGEGPRRLKNLYFLYLIELRALSKVLPFFERPDFQLFTGNKIQDEENK...
PPPPDDPDFLLCLQPVLVAQDQPQFNDGLVLVLCLLPPPFQVLLVVLCPDLLQFKAWAQLPDAQPPDDDFDAQPFPLLDFDFDDPVVAFPQVVCVVPPDDPVNVVVVVVCVVVVPDDPDPPPDDPVNVVVVVVLLVVQVVPQALADPRPSVDPSTTIGGCVVQDQEASVPDDDLVQVLVQCLVVVLPLDDPPDDDRDDLLDPPPDPPPPDDPVNSLVVGDLLSVLVVLLVLLLVLLSQLRHQAQPFPDDDPVDTDTGHDLVSLCCQRRCVNRVHSNNVSVSSVVVNLLLLLLLLLLCLLVLPAPPDWRTRPDVVVRVVSS...
LLLLLLLLLHHHHHHTTSSSBLTTSSLBHHHHHHHIIIIIHHHHHHHHTSHHHHEEEELSLLLLSSLSLLLLLLSGGGLLLLLLTTTSLHHHHGGGSLLLHHHHHGGGGGGGGTTSLLLLLLLLHHHHHHHHHHHHHHHHHSLSSLLLLTTSTTLEEEETTTSLLLLLLLLSHHHHHHHHHHHHHTLLSLTTSLSLLLTTLLLSLLLLSLLHHHHHTTSLHHHHHHHHHHHHHHHHHHHHHHHTEEEEELSSLEEEELLHHHHHHHHLTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTLLLLSSLHHHHHHHH...
324
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5dka_A-Q96EQ8
MGSVLSTDSGKSAPASATARALERRRDPELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSCIATSLKNNKWTCPYCRAYLPSEGVPATDVAKRMKSEYKNCAECDTLVCLSEMRAHIRTCQKYIDKYGPLQELEETAARCVCPFCQRELYEDSLLDHCITHHRSERRPVFCPLCRLIPDENPSSFSGSLIRHLQVSHTLFYDDFIDFNIIEEALIRRVLDRSLLEYVNHSNTT
DDDDDDDDDDDDDDDDDDDDDPPVDPDPLPPPPDCAAPQVRHREDQWFAFPVGDIHHLQRLVVCVVVDVQADPPPRDHTPDSHGGPVVSVVVLQVDWDQDPFPRDIDRSNCVLVCLQVPPRNCVPPNHDDDPPCPQPWFAQFPPRDIDRLVCNLVCCVVPPVPPQDQDFDRCVVVDPPDDRDRDNDDPNVVCVPPPPPPCVVVPPVVVVVVVVVVVVVVVVVVVVVVVVVVD
LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLBLTTTSSBLSSEEELTTSLEEEHHHHHHHHHHSSSBLTTTLLBLSSSLEELHHHHHHTTSLEEELTTTLLEEETTTHHHHHTTLHHHHHHHLSLLLLLLLLLEEELTTTLLEEEGGGHHHHHHHHLTTLLLLLLLTTGGGSTTLLLLLLSSLHHHHHHHHTLTTLTTSLLHHHHHHHHHHHHHHHHHHHHHHHHTTL
130,270
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[58, 58, 58, 58, 58, 58, 58, 58, 58, 58, 58, 58, 58, 58, 58, 58, 58, 58, 58, 269, 213, 213, 213, 213, 466, 466, 466, 238, 466, 466, 466, 452, 466, 437, 144, 71, 420, 275, 194, 275, 275, 144, 369, 144, 369, 341, 341, 341, 319, 493, 257, 257, 362, 158, 319, 275, 57, 341, 402, 334, 367, 505, 56, 460, 510, 146, 456, 332, 4...
[569, 569, 569, 569, 569, 569, 569, 569, 569, 569, 569, 569, 569, 569, 569, 569, 569, 569, 569, 36, 473, 473, 473, 948, 948, 108, 108, 108, 108, 108, 19, 930, 948, 765, 33, 2, 837, 344, 196, 93, 344, 2, 237, 33, 196, 485, 2, 2, 875, 185, 1005, 1005, 440, 87, 376, 2, 873, 485, 369, 312, 60, 583, 213, 784, 14, 966, 628, ...
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[1462, 2125, 3535, 3535, 3535, 3535, 3535, 3535, 3535, 3535, 3535, 3535, 3535, 3535, 3535, 3535, 3535, 3535, 3535, 1348, 3482, 3891, 644, 3891, 3392, 3074, 3074, 3074, 3074, 3074, 1056, 3540, 3233, 3474, 3990, 285, 2794, 2025, 1479, 2214, 2025, 285, 657, 1686, 383, 2064, 714, 714, 1481, 831, 2295, 3732, 2751, 2375, 148...
2yvp_A-Q5SJY9
MSPWERILLEEILSEPVRLVKERVRTHTGRELTYVYRPGPVAASFVLPVTERGTALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETLIPLPSFHPQPSFTAVVFHPFLALKARVVTPPTLEEGELLESLELPLTEVYALLAKGEIQDASTALTLFYAEPHLKRLGLL
DDQKAWPDKDFPDDPPATKIWTWIQHNVRDIDIAIAREDDWEKEFEFAAAPLLKTKWKQWQDVVVRGTAIGTQMDTQDDVGDSVNRNQVSCCAQPQKGAPDKDWFDKDDPCPSHYPYIYIYIYGYNIDRDDDHHDDDPIDMDIDMDHLVVVVVCLVVCRRVDPSRNVSNVRCVVVCVVVVSD
LLSSEEEEEEEEELSSSLEEEEEEELTTSLEEEEEEBLSSLEEEEEEEELTTSEEEEEEEEEGGGTEEEEELLEEELLTTLLHHHHHHHHHHHHSLEELSEEEELLLBLSLTTTBLLEEEEEEEESLEELSLLLLLTTLLEEEEEEEHHHHHHHHHHTLLLLHHHHHHHHHHHHHHHHHTLL
86
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3dwf_A-Q6QLL4
NEKFRPEMLQGKKVIVTGASKGIGREIAYHLAKMGAHVVVTARSKEALQKVVARCLELGAASAHYIAGSMEDMTFAEEFVAEAGNLMGGLDMLILNHVLYNRLTFFHGEIDNVRKSMEVNFHSFVVLSVAAMPMLMQSQGSIAVVSSVAGKITYPLIAPYSASKFALDGFFSTLRSEFLVNKVNVSITLCILGLIDTETAIKATSGIYLGPASPKEECALEIIKGTALRQDEMYYVGSRWVPYLLGNPGRKIMEFLSAAEYNWDNVLSNEKLYGRW
FPDDDLLLLAQAQEEFEPCLFFLNLLLLLSSLLSQHAYEYEDADPVSQVVSQVNSVVNHHVHYHYDYDALLDLVCLLVVLVVSCVVSVFHAEYELDDFDQDAQDADDPPVVLLVSRQSRLPVSVVSNCVSRQVRCLVNLHEYEREAEVLLQDPDHRQVSNSVNRVNCCVVQVVVQVVCVLVVRSYFYEYEYEAAAPIPSSCVRPVPNPDDDHDYSNVSSVQSVRCGSSSPNYGYDHPDPCVCVVRVPPVVVVVVVVCVVVDPSVCVVPDCVNVDPN
LLLLLGGGGTTLEEEEETTTSHHHHHHHHHHHHTTLEEEEEESLHHHHHHHHHHHHHTTLSEEEEEELLTTLHHHHHHHHHHHHHHHTSLSEEEELLLLLLLLLLLSLLHHHHHHHHIIIIIHHHHHHHHHHHHHHHHTLEEEEELLGGGTSLLTTLHHHHHHHHHHHHHHHHHHHHHHHTTLLLEEEEEEELLBLLHHHHHHHTTTLLLLLBLHHHHHHHHHHHHHTTLSEEEESSLSSHHHHHSLHHHHHHHHHHGGGSLHHHHHHLGGGLLTT
457
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[195, 195, 354, 1697, 1635, 1635, 682, 682, 682, 682, 682, 682, 682, 1906, 1906, 1906, 682, 682, 639, 639, 1900, 1900, 364, 46, 458, 1708, 1418, 787, 987, 1750, 1545, 1651, 509, 1579, 1579, 476, 1417, 910, 1996, 1423, 1670, 1606, 633, 1928, 432, 1687, 1838, 1549, 261, 1489, 367, 1845, 383, 1135, 367, 1845, 116, 442, 44...
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5o32_D-P05156
KVTYTSQEDLVEKKCLAKKYTHLSCDKVFCQPWQRCIEGTCVCKLPYQCPKNGTAVCATNRRSFPTYCQQKSLECLHPGTKFLNNGTCTAEGKFSVSLKHGNTDSEGIVEVKLVDQDKTMFICKSSWSMREANVACLDLGFQQGADTQRRFKLSDLSINSTECLHVHCRGLETSLAECTFTKRRTMGYQDFADVVCYTQKADSPMDDFFQCVNGKYISQMKACDGINDCGDQSDELCCKACQGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVGCAGFASVTQEETEILTADMDAERRRIKSLLPKLSCGVKNRMHIRRK...
PPPPVPLLPFFDPVVVVVQDFQQQQLFWFAFLQWFDDPRGTAGHALVPFDQPAFWFAWPVQDIDSHPSSQVSVCSVPVRGATQATHHGDPQFDWDWAAPPDPDRQKHFIWIDHRPDPDIFFAFPVQDDQLLQQLSLLLSPQPQGFDPPDDDDRDDDPPPDQWHWRWDDPSLGNHSNQIWTWTDGDPDDTDTDITGRDDPPPDDDDPAWDQHSVRDIDGSLPQQQQDPNRSRQSSFQRGPHHDDQWDQALLSGTHDNVQQCPPDQGGPLSPSNPPPVPDDDPDDDDIHTPGDNNVVVSVVSLVPPQFAFFQDADDPPDPDD...
LLLLLLGGGSBLHHHHTTLLLTTBTTTSLLLTTEEEETTEEEELLGGGSLSLSLLEEETTSLEESSHHHHHHHHHHSTTLLEEEESSLLSSLLLEEEEESLSSTTEEEEEEELTTLSSLEEBBGGGLLHHHHHHHHHHTTLTTLBLSSLLLLLLSLLLLLSLLEEEELLSLLSSGGGSEEEELLLSSLLLBLEEEBLLTTSLSLLSSEEELTTSLEEEGGGTTSSSLLSSSSGGGSSBSSLSTTLEELTTSLEELGGGTTSSSLLSTTLGGGSLLTTLLLLLLLLLEELSLLHHHHHHHHHHTSLLLLLSLLLLLLLLLL...
448
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[1812, 1697, 1697, 1697, 1221, 1906, 1906, 1906, 1906, 1459, 230, 230, 645, 645, 1565, 1565, 1836, 1836, 1836, 1836, 1836, 993, 993, 993, 1637, 1338, 964, 590, 237, 272, 1822, 1517, 1486, 3, 592, 1408, 1628, 296, 945, 81, 867, 81, 1988, 1882, 55, 1523, 589, 729, 1666, 1601, 1601, 811, 867, 811, 329, 140, 1327, 919, 867...
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2y1o_A-P14900
MADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVASPGIALAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDDECELYVLELSSFQLETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVVNADDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSK...
DDDPPPFAEEEEAQDLQSVLVQVVQVVVVHAYEYEYLAPDGPRPVVDDPPHHYDYNHDDLVSLCRGQEYEYELPDACPPPSNVVSVVVVRQYAYLVQVLLVQDPAAEEEEAEPDLQVVLQVLLVQLCVLLVAQEDGEEPNPNRSSVSDDPSHHYYYYYDALSNLVRHQRNLHLEYFHLAFDDDPCVSVVVPRVSRLVSRLSRCRNHQAYEYEPVHPSRAHPVGDDPRYFYEYDPDTQWYWDDDPNWIFTHHNRDTQGTCVLALDDAPSVSSSLSSSLVSCVSSVRDSVSSVVSRNPDNTDAQCQDFLDDDQQETETRVLV...
LLLLTTLLEEEELLSHHHHHHHHHHHTTTLLLEEEESSSSLTTGGGSLTTSLEEESSLLHHHHHTLSEEEELTTSLTTSHHHHHHHHTTLEEELHHHHHHHHLLSLEEEEELSSSHHHHHHHHHHHHHHTTLLEEEEETTSSLGGGGLLTTLLEEEEELLHHHHTTLSLLLLSEEEELLLLLLLTTTLTTLHHHHHHHHHGGGTTLSEEEEETTLGGGSLTTLLLTTEEEEESSSSSEEEEEETTEEEEEETTEEEEEGGGSSLLSHHHHHHHHHHHHHHHHTTLLHHHHHHHHHHLLLLTTSSEEEEEETTEEEEELTT...
432
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3rcd_A-P04626
RILKETELRKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVSRLLGICLTSTVQLVTQLMPYGCLLDHVRENRGRLGSQDLLNWCMQIAKGMSYLEDVRLVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVPIKWMALESILRRRFTHQSDVWSYGVTVWELMTFGAKPYDGIPAREIPDLLEKGERLPQPPICTIDVYMIMVKCWMIDSECRPRFRELVSEFSRMARDPQRFVVIQNEDLGPASPLDSTFYRSLLEDDDMGDLVDAEEYLVPQQ
DADEPVQKAFDAWPDADDFATWTFIWGHPDPDPATATKIKGWGDDDPDPVVVVLQVSLLSNQRRDDDQQAWHFNYWYDDSTIITITFDQQQAFQLVNLQLCVLADDLLLLLLVLLSVLVQLLSCVVQQKFQQDQASNQWGHNDSNGIHGHNSSVIDHAPPSDQWDADDDDFHDLLLFALCCVPVVTTHSLRVLSSSLVRSVCSLQSNDDRPPPDASVCVNVCLVVVHGDDDRPFFDPVSVVLSVQSSDNDSVSHDGSVVSSVVSVVCSVVSCVGGPDPNNPRDDDDLCRRPSNVVVVPDPPPPRHDGPVNSVDDDP
LEELGGGEEEEEEEEELSSEEEEEEEELLTTLLLBEEEEEEEELLLLLHHHHHHHHHHHHHHHSLLLTTBLLEEEEEESSSEEEEEELLTTLBHHHHHHHTTTSLLHHHHHHHHHHHHHHHHHHHHTTBLLSLLSGGGEEEEETTEEEELLGGGLLBLLTTLSLEELLSLLLLGGGSLHHHHHHLEELHHHHHHHHHHHHHHHHTTSLLTTTTSLGGGHHHHHHTTLLLLLLTTBLHHHHHHHHHHTLSSSTTSLLHHHHHHHHHHHTTSHHHHBLLTTTTSLLLLGGGLHHHHHHHLLTTLSSBLLHHHHHSLLT
14,465
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3cio_A-P38134
GVEAPEQLEEHGISVYATIPMSEWLDKRTRLRKKNLFSNQQRHRTKNIPFLAVDNPADSAVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGFDVITRGQVPPNPSELLMRDRMRQLLEWANDHYDLVIVDTPPMLAVSDAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKRASTAYSYGYNYYGYSYSEKE
FDADPVLLVVVVFDALFEAAAFPVQCVVFWDDDPDVPDPDTDTDLAPRAQCCQVPVLTSRLVRLLSSLVSVVVVCVPFPFQEEEFAELAPPLCSVNSLLSNLLSVLVVVFAEEEEALALPDFRVCRHLVHDQQDFLVCQLVVNDDPVVQWDDSVSSNYIYGGSHHRDPDSQVSLLDVSVLVVRVVCRVVGNHYYYYHYHQVVDCSCLSSQVSGREYEYRGERSPHHSVSSSVSVVSSVVSVGHYPGYYYPHNDDGSSSCSPPVDDPPSPDPPPDD
SLLSTHHHHTTTLLEEEEEELLHHHHHHHBLLLLLTTLLLLLBLLSSLLLHHHHLTTSHHHHHHHHHHHHHHHHTTTSSSSEEEEEESSTTSLHHHHHHHHHHHHHTTTLLEEEEELLTTTLLHHHHHTLLLSSSHHHHHHTSSLHHHHEEEETTTTEEEELLLSLLSLHHHHHTSHHHHHHHHHHHHHLSEEEEELLLTTTLTHHHHHHTTLSEEEEEEETTTSLHHHHHHHHHHHHHTTLLEEEEEEEEELLLHHHHHHHLLLLLLLLLLLLL
14
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3vmq_A-Q99T05
QPVGKPPKKKKSKRILLKILLTILIIIALFIGIMYFLSTRDNVDELRKIENKSSFVSADNMPEYVKGAFISMEDERFYNHHGFDLKGTTRALFSTISDRDVQGGSTITQQVVKNYFYDNDRSFTRKVKELFVAHRVEKQYNKNEILSFYLNNIYFGDNQYTLEGAANHYFGTTVNKNSTTMSHITVLQSAILASKVNAPSVYNINNMSENFTQRVSTNLEKMKQQNYINETQYQQAMSQLNR
DPDDDPPPPDPDVVVVVVVVVVVVVVVVVLLVVLLVVLVVDDLVCLCVLVVDPLQDFLVQFQLLLLLLQCLQQPVCLQPDQQADPVVLVVLVVVVVVPDDNHDRGHLLLVLCCQPPPVPDDDPSNSSSSSSVSNVNSVPDHSRSSSSSSQSAFDQAPPRGHVQSNCCVLPVAGRRNPDPPTHHDASLNSNLSSLCSVPNPPADPVDGDPVSLVSSLVSLVSSCVSVSDDPVSSVVSNVVSVD
LLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHTTSLGGGGGGGGGSTTLLLGGGSLHHHHHHHHHHHLTTGGGSSSLLHHHHHHHHHHHHTTSLLLLLLLHHHHHHHHHHLTTLLLHHHHHHHHHHHHHHHHHSLHHHHHHHHHTSSLLSTTLLSHHHHHHHHHSLBSLTTLSSSLBLLHHHHHHHHHHTTSTTTLLSSSLLHHHHHHHHHHHHHHHHTTSSLHHHHHHHHHHHTL
103,461
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[470, 470, 470, 470, 470, 817, 817, 822, 209, 569, 569, 569, 569, 746, 746, 746, 746, 746, 746, 746, 746, 746, 746, 746, 746, 746, 209, 209, 209, 240, 817, 817, 817, 490, 490, 490, 490, 622, 898, 287, 989, 989, 989, 322, 182, 182, 182, 182, 182, 182, 182, 182, 182, 182, 182, 182, 1011, 142, 182, 809, 435, 142, 142, 142...
[740, 740, 740, 740, 740, 204, 204, 1623, 1623, 209, 209, 1787, 1787, 209, 209, 209, 209, 209, 209, 209, 209, 209, 209, 209, 209, 209, 209, 722, 420, 931, 204, 204, 204, 77, 77, 77, 77, 777, 1342, 1178, 230, 1459, 363, 363, 1906, 1906, 1906, 1906, 1906, 1906, 1906, 1906, 1906, 1906, 1906, 1906, 385, 278, 1906, 1885, 27...
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1j0e_A-Q7M523
SGVAKFAKYPLTFGPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYTHLVSIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIEDGFDIGMRKSFANALQELEDAGHKPYPIPAGCSEHKYGGLGFVGFADEVINQEVELGIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEKTKEQTLRIANNTAKLIGVEHEFKDFTLDTRFAYPCYGVPNEGTIEAIRTCAEQEGVLTDPVYEGKSMQGLIALIKEDYFKPGANVLY...
DDLVVAQFADAFPPQFDKAFLVLLCVVLPVQATEIERPQQCGHPQQSGFDLVLLVRRVVVVVVVDPAAEEEEEDAQQDPNLLSVLSVCLVVVHAYEYEHEHADPQDPVLVVPSNDAFSNVSSVVSPHRYDYYHDYDDLDDDPVQVVVCVVCVVVVGGYDRQYRSSQPPLSRQSSLLVVLVSLVVVCVVVVHDAQAEFFEFDNASNLLSVLLNCLVVPCSQRYAYEYQALPVVVRFVSNLVSNQSVNVVGVNPDRDPGYHYHDPQNPPHAPAADPLLLVLQVSCCVRPVDGDARGTRSSSSSVVSVCSNVSVDHGHGYYYY...
LLGGGSLLLLLSSSSLLEEELHHHHHHTTSSSEEEEEEGGGSLSSTTLLHHHHHHTTTHHHHHHTTLLEEEEEEETTLHHHHHHHHHHHHHTLEEEEEEELLSLLLGGGTTTTTTSSHHHHHHHTTLEEEELLLLLLSSLLHHHHHHHHHHHHTTLLEEEELGGGTTSTTTTHHHHHHHHHHHHHHHHHTLLLSEEEEEESSSHHHHHHHHHHGGGTLGGGEEEEELSSLHHHHHHHHHHHHHHHHHHHTLLLLLLLLEEELTTLLSBTTBLLHHHHHHHHHHHHHHSLLLLTTTHHHHHHHHHHHHHTTLSLTTLEEEE...
249
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[998, 514, 146, 505, 571, 577, 851, 776, 127, 483, 873, 376, 928, 482, 427, 600, 713, 921, 649, 305, 564, 199, 468, 140, 259, 797, 528, 140, 528, 884, 76, 143, 485, 830, 717, 247, 97, 656, 656, 93, 512, 956, 93, 496, 876, 413, 584, 876, 806, 876, 544, 544, 876, 902, 544, 876, 259, 876, 881, 648, 725, 791, 249, 168, 494...
[656, 286, 392, 1162, 1667, 1198, 1979, 1692, 262, 766, 1528, 327, 186, 197, 152, 1859, 1831, 1719, 760, 326, 534, 1364, 1928, 1025, 1692, 690, 1777, 426, 1634, 529, 1909, 1909, 621, 621, 684, 451, 338, 1671, 1977, 81, 126, 1363, 331, 1055, 348, 861, 1367, 296, 1195, 875, 1400, 1779, 296, 960, 833, 1692, 1779, 348, 257...
[1307, 1886, 2974, 337, 2646, 253, 3671, 3784, 2210, 1479, 2711, 3983, 1749, 601, 2198, 1076, 2184, 3224, 277, 2312, 1385, 3114, 2940, 1820, 3114, 1886, 1557, 95, 2031, 3391, 963, 2882, 3288, 3288, 2837, 3630, 3122, 2235, 1606, 3006, 1863, 3645, 3655, 399, 2110, 2855, 525, 1391, 1967, 212, 2341, 596, 1391, 186, 446, 19...
1ci9_A-Q9KX40
MTAASLDPTAFSLDAASLAARLDAVFDQALRERRLVGAVAIVARHGEILYRRAQGLADREAGRPMREDTLFRLASVTKPIVALAVLRLVARGELALDAPVTRWLPEFRPRLADGSEPLVTIHHLLTHTSGLGYWLLEGAGSVYDRLGISDGIDLRDFDLDENLRRLASAPLSFAPGSGWQYSLALDVLGAVVERATGQPLAAAVDALVAQPLGMRDCGFVSAEPERFAVPYHDGQPEPVRMRDGIEVPLPEGHGAAVRFAPSRVFEPGAYPSGGAGMYGSADDVLRALEAIRANPGFLPETLADAARRDQAGVGAETRGP...
DQLDADDLVPDDDDLVLLAVLLVVLLVVCVVLQVFQKWWKWKDFLNRTSDTDIDHALDVVVRHGGDLQFKDQFFQLLQLLLLLLVQLCVLVVLFDQADFLCVQVVLLFAAAPVRHTAGDGNVLLLQQQALAAACQAAPPPDLCNVLVADPLQADDPDELVSNSNSRSDDHRNDHRLPAHYDHLSQQSSLSSQCSSVVDASQVSSCVLPCVVLVFDFKTQADPCPVSHRFAWEADPSHTDTDAAQDWDQDDPPPHGTDRHHPCSNHDPPRGRRSRGRMMGRPVSSVSSLLCLQPVPVSHDVVSSVQQLDFPNDQVNCVVHG...
LLLLLLLTTTLLLLHHHHHHHHHHHHHHHHHTTSLSEEEEEEEETTEEEEEEEEEEEETTTTEELLTTLBEELGGGHHHHHHHHHHHHHHTTSSLTTSBGGGTLTTLLLLBTTSLLLLLBHHHHHTTLSSLLLHHHHLTTSHHHHTTLLLSSSLLSSLHHHHHHHHHHSLBSSLTTSLLLLLTHHHHHHHHHHHHHTSLHHHHHIIIIIHHHTLLSEESSLSLGGGBLLLEELLSSSLEELLTTEEEELLTTSLSEEEELGGGGGLTTSLLLTTTLLEELHHHHHHHHHHHHHLSSSSLHHHHHHHTSLSSLGGGLTTST...
114
[6, 4, 4, 8, 8, 4, 0, 13, 13, 15, 15, 6, 0, 13, 0, 9, 9, 4, 9, 16, 16, 16, 16, 16, 16, 9, 3, 16, 9, 0, 3, 9, 0, 0, 8, 7, 7, 7, 12, 1, 12, 1, 18, 18, 8, 0, 18, 12, 18, 18, 12, 14, 12, 7, 7, 7, 7, 8, 7, 0, 0, 6, 6, 7, 7, 7, 14, 7, 7, 8, 18, 18, 18, 8, 8, 8, 4, 4, 10, 10, 10, 10, 10, 10, 10, 10, 10, 10, 9, 9, 9, 3, 16, 9,...
[69, 9, 13, 13, 13, 13, 94, 94, 94, 98, 69, 69, 94, 94, 36, 40, 112, 124, 124, 73, 18, 39, 1, 73, 73, 14, 70, 35, 112, 118, 72, 108, 88, 118, 4, 19, 19, 16, 0, 54, 54, 80, 66, 55, 13, 82, 120, 66, 53, 53, 66, 115, 103, 120, 120, 19, 19, 116, 19, 71, 110, 2, 104, 19, 19, 64, 62, 19, 19, 79, 16, 79, 79, 79, 79, 79, 27, 4...
[160, 382, 382, 300, 317, 317, 447, 487, 487, 203, 108, 160, 140, 140, 178, 219, 345, 191, 345, 322, 455, 322, 322, 127, 127, 274, 248, 471, 502, 375, 207, 244, 478, 37, 341, 420, 161, 383, 6, 6, 497, 234, 172, 340, 401, 237, 126, 172, 172, 237, 307, 220, 307, 93, 412, 161, 420, 420, 420, 375, 284, 437, 473, 420, 161, ...
[139, 842, 842, 926, 151, 151, 86, 938, 938, 764, 359, 359, 505, 800, 268, 867, 936, 700, 700, 1011, 242, 461, 941, 61, 537, 468, 595, 23, 7, 856, 5, 670, 553, 993, 2, 623, 319, 755, 977, 696, 122, 164, 897, 684, 799, 361, 684, 897, 560, 694, 641, 758, 502, 704, 35, 35, 396, 267, 837, 675, 675, 1015, 593, 396, 319, 755...
[1968, 1025, 1748, 1330, 697, 306, 1283, 655, 655, 478, 1076, 751, 1283, 1162, 1474, 1408, 1372, 1229, 1372, 385, 1739, 1495, 1862, 896, 1756, 491, 1498, 1811, 1656, 1814, 640, 337, 1919, 1465, 1622, 1671, 1988, 1142, 1315, 159, 1713, 159, 1717, 705, 769, 1440, 705, 1043, 1163, 1163, 677, 1710, 677, 1255, 1182, 1063, 8...
[1445, 387, 719, 1397, 959, 665, 2663, 2663, 2623, 1236, 428, 3735, 2623, 337, 2168, 3330, 2976, 2744, 1540, 3501, 149, 841, 2315, 2846, 2916, 1074, 2613, 930, 1978, 2801, 913, 1162, 3243, 1831, 3466, 2235, 1695, 2228, 23, 23, 523, 3697, 3697, 1046, 3072, 3056, 2219, 3697, 640, 1321, 291, 3626, 3089, 1996, 1996, 485, 4...
1lv7_A-P0AAI3
MLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMG
KDALVRLPQAVVLQFQQVVLCVLCVVLLVCLQPVPVCVVVVHQDAQEAEEEEAPQLCLVSSLSNSCNSSSFMEIEDELLVLQDPDACSSLSNLVNVLVVPLVRPLYEYEYEAVCSLFFDDDPDPDVSVRRSVSNVVSNVCSLQPDPRSSNYHYYYYDHCPPGGDCSQCDGSHNVHYRYSYAGWLVRQLVLLVSLCVVFAADPQDDSSQLSLQDPPDHSRNSNQLSVQQVVVCVVVVHRHRYPVSSVQSSCCVPFN
EELGGGLLLLGGGLLSLHHHHHHHHHHHHHHHLHHHHHHTTLLLLSEEEEELLTTSSHHHHHHHHHHHHTLLEEEEEGGGGLLSSTTHHHHHHHHHHHHHHHTLSEEEEEELTHHHHBLLLLLLLTTHHHHHHHHHHHHHHHHTLLGGGLEEEEEEESLGGGBLGGGGSTTSSLEEEELLLLLHHHHHHHHHHHHTTSLBLTTLLHHHHHHTLTTLLHHHHHHHHHHHHHHHHHTTLSSBLHHHHHHHHHHHHHL
308
[11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 3, 3, 13, 13, 13, 13, 19, 2, 2, 19, 19, 13, 13, 3, 11, 0, 9, 11, 11, 4, 10, 16, 4, 4, 8, 7, 2, 2, 2, 2, 2, 19, 15, 12, 2, 12, 12, 12, 7, 7, 7, 14, 7, 7, 2, 2, 2, 19, 6, 6, 13, 13, 13, 3, 3, 9, 3, 11, 16, 4, 3, 16, 9, 17, 17, 5, 5, 5, 5...
[12, 12, 12, 12, 12, 12, 90, 90, 90, 90, 90, 90, 90, 90, 90, 90, 90, 68, 90, 30, 30, 30, 114, 121, 121, 121, 98, 42, 15, 15, 52, 113, 57, 57, 114, 70, 78, 17, 127, 70, 46, 34, 17, 85, 118, 4, 102, 91, 91, 92, 91, 15, 11, 25, 66, 91, 91, 91, 29, 19, 58, 61, 115, 64, 64, 91, 91, 77, 15, 42, 41, 98, 121, 121, 125, 72, 112...
[432, 432, 432, 432, 432, 432, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 212, 281, 386, 149, 149, 474, 466, 466, 466, 213, 117, 131, 353, 353, 132, 446, 298, 171, 321, 268, 502, 338, 91, 424, 8, 197, 333, 148, 121, 395, 498, 88, 200, 36, 353, 353, 243, 307, 312, 88, 88, 111, 484, 493, 139, 69, 493, 93, 498, 434, 434,...
[731, 731, 731, 133, 133, 133, 182, 182, 182, 182, 182, 182, 182, 182, 182, 182, 182, 828, 322, 989, 281, 287, 898, 19, 19, 108, 632, 399, 787, 838, 657, 429, 594, 568, 687, 703, 807, 257, 976, 441, 937, 528, 606, 578, 423, 794, 492, 161, 521, 220, 220, 838, 657, 343, 502, 634, 364, 364, 1009, 35, 185, 1005, 243, 450, ...
[195, 195, 1221, 1221, 1221, 1221, 1906, 1906, 1906, 1906, 1906, 1906, 1906, 1906, 1906, 1906, 1906, 767, 1459, 289, 1178, 757, 1565, 993, 993, 1215, 1251, 1179, 894, 894, 162, 118, 1030, 328, 1607, 1249, 1247, 720, 2000, 1256, 1928, 1520, 513, 238, 1592, 1626, 213, 212, 1119, 1297, 1119, 894, 162, 1007, 33, 1119, 887,...
[778, 778, 4, 4, 4, 4, 2029, 2029, 1435, 1435, 1435, 1435, 1435, 1435, 1435, 1435, 1435, 4005, 3776, 1084, 1084, 31, 671, 2432, 1056, 3074, 2656, 854, 2472, 3423, 1584, 707, 3217, 2458, 1592, 2126, 495, 3189, 2075, 2861, 2649, 3652, 1118, 1496, 3307, 1686, 2794, 476, 693, 3185, 2200, 1059, 1438, 1159, 423, 452, 1515, 1...
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EC Dataset with AlphaFold2 Structural Sequence

  • Description: The Enzyme Commission number (EC number) is a numerical classification scheme for enzymes, based on the chemical reactions they catalyze.
  • Number of labels: 585
  • Problem Type: multi_label_classification
  • Columns:
    • aa_seq: protein amino acid sequence
    • foldseek_seq: foldseek 20 3di structural sequence
    • ss8_seq: DSSP 8 secondary structure sequence

Github

Simple, Efficient and Scalable Structure-aware Adapter Boosts Protein Language Models

https://github.com/tyang816/SES-Adapter

VenusFactory: A Unified Platform for Protein Engineering Data Retrieval and Language Model Fine-Tuning

https://github.com/ai4protein/VenusFactory

Citation

Please cite our work if you use our dataset.

@article{tan2024ses-adapter,
  title={Simple, Efficient, and Scalable Structure-Aware Adapter Boosts Protein Language Models},
  author={Tan, Yang and Li, Mingchen and Zhou, Bingxin and Zhong, Bozitao and Zheng, Lirong and Tan, Pan and Zhou, Ziyi and Yu, Huiqun and Fan, Guisheng and Hong, Liang},
  journal={Journal of Chemical Information and Modeling},
  year={2024},
  publisher={ACS Publications}
}

@article{tan2025venusfactory,
  title={VenusFactory: A Unified Platform for Protein Engineering Data Retrieval and Language Model Fine-Tuning},
  author={Tan, Yang and Liu, Chen and Gao, Jingyuan and Wu, Banghao and Li, Mingchen and Wang, Ruilin and Zhang, Lingrong and Yu, Huiqun and Fan, Guisheng and Hong, Liang and Zhou, Bingxin},
  journal={arXiv preprint arXiv:2503.15438},
  year={2025}
}
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