LLM4Cell: A Survey of Large Language and Agentic Models for Single-Cell Biology
Paper • 2510.07793 • Published • 3
single cell multiomic multimodal foundation models
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TEDDY: A Family Of Foundation Models For Understanding Single Cell Biology
Paper • 2503.03485 • Published -
ChromFound: Towards A Universal Foundation Model for Single-Cell Chromatin Accessibility Data
Paper • 2505.12638 • Published • 1 -
CellForge: Agentic Design of Virtual Cell Models
Paper • 2508.02276 • Published • 39 -
BMFM-RNA: An Open Framework for Building and Evaluating Transcriptomic Foundation Models
Paper • 2506.14861 • Published -
GRNFormer: A Biologically-Guided Framework for Integrating Gene Regulatory Networks into RNA Foundation Models
Paper • 2503.01682 • Published • 1 -
Cell-o1: Training LLMs to Solve Single-Cell Reasoning Puzzles with Reinforcement Learning
Paper • 2506.02911 • Published -
scE^2TM: Toward Interpretable Single-Cell Embedding via Topic Modeling
Paper • 2507.08355 • Published -
BioReason: Incentivizing Multimodal Biological Reasoning within a DNA-LLM Model
Paper • 2505.23579 • Published • 2 -
A Multi-Modal AI Copilot for Single-Cell Analysis with Instruction Following
Paper • 2501.08187 • Published • 27