Update pipeline tag and add paper/code links

#1
by nielsr HF Staff - opened
Files changed (1) hide show
  1. README.md +11 -9
README.md CHANGED
@@ -1,25 +1,27 @@
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  ---
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  library_name: tedbench
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- tags:
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- - protein
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- - structure
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- - fold-classification
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- - tedbench
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- pipeline_tag: other
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  license: bsd-3-clause
 
 
 
 
 
 
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  ---
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  # TEDBench — Fine-tuned from pretrained MiAE (structure only)
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  **Variant:** `miae_b`  |  **Parameters:** 102M  |  **Layers:** 12  |  **Hidden dim:** 768  |  **Attn heads:** 12
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- This **MiAEClassifier** was initialised from a pretrained MiAE and fine-tuned on TEDBench for fold classification.
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  Part of the [TEDBench](https://github.com/BorgwardtLab/TEDBench) benchmark for
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  protein fold classification (ICML 2026). MiAE is an SE(3)-invariant masked
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  autoencoder that masks up to 90% of backbone frames and reconstructs the full
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  structure with a lightweight decoder.
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  ## Architecture sizes
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  | Variant | Params | Layers | Hidden dim | Attn heads |
@@ -55,8 +57,8 @@ model.eval()
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  ```bibtex
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  @inproceedings{chen2026tedbench,
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  title={Protein Fold Classification at Scale: Benchmarking and Pretraining},
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- author={Chen, Dexiong and Manolache, Andrei and Niepert, Mathias and Borgwardt, Karsten},
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  booktitle={Proceedings of the 43rd International Conference on Machine Learning},
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  year={2026}
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  }
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- ```
 
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  ---
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  library_name: tedbench
 
 
 
 
 
 
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  license: bsd-3-clause
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+ pipeline_tag: graph-ml
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+ tags:
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+ - protein
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+ - structure
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+ - fold-classification
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+ - tedbench
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  ---
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  # TEDBench — Fine-tuned from pretrained MiAE (structure only)
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  **Variant:** `miae_b`  |  **Parameters:** 102M  |  **Layers:** 12  |  **Hidden dim:** 768  |  **Attn heads:** 12
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+ This **MiAEClassifier** was initialised from a pretrained MiAE and fine-tuned on TEDBench for fold classification. This model was presented in the paper [Protein Fold Classification at Scale: Benchmarking and Pretraining](https://huggingface.co/papers/2605.18552).
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  Part of the [TEDBench](https://github.com/BorgwardtLab/TEDBench) benchmark for
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  protein fold classification (ICML 2026). MiAE is an SE(3)-invariant masked
20
  autoencoder that masks up to 90% of backbone frames and reconstructs the full
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  structure with a lightweight decoder.
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+ Official Code: [https://github.com/BorgwardtLab/TEDBench](https://github.com/BorgwardtLab/TEDBench)
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+
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  ## Architecture sizes
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  | Variant | Params | Layers | Hidden dim | Attn heads |
 
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  ```bibtex
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  @inproceedings{chen2026tedbench,
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  title={Protein Fold Classification at Scale: Benchmarking and Pretraining},
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+ author={Chen, Dexiong house, Andrei Manolache, Mathias Niepert, Karsten Borgwardt},
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  booktitle={Proceedings of the 43rd International Conference on Machine Learning},
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  year={2026}
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  }
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+ ```