Upload 70 files

small_vit/H&E_AC_BCE/model_instance_1/config.json

@@ -0,0 +1 @@
+{"experiment_name": "1031_AC_BCE_experiment", "experiments_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/models/rotation", "norm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/images", "norm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/annotations", "unnorm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/images", "unnorm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/annotations", "labels_path": ["/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/image_rotations_HE.json"], "selection_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/assigned_split.json", "mapping_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/patient_mapping.json", "seed": 1, "iterations": 750000, "iterations_per_update": 20, "iterations_per_checkpoint": 5000, "save_all_checkpoints": false, "label_type": "class_prob", "gaussian_stdev": 2.5, "augmentation": {"oversample_small_angles": true, "small_angle_prob": 0.25, "small_angle_range": 30, "brightness": 0.2, "contrast": 0.2, "saturation": 0.2, "hue": 0.05}, "learning_rate": 0.0002, "weight_decay": 0.01, "lr_patience": 5, "lr_factor": 0.5, "loss_function": "BCE", "model_name": "ViT", "apply_masking": true, "model": {"patch_shape": 16, "input_dim": 3, "embed_dim": 128, "n_classes": 360, "depth": 8, "n_heads": 4, "mlp_ratio": 4, "use_pos_embed": true, "pytorch_attn_imp": false, "init_values": 1e-05, "max_tiles": 15000, "tile_dropout_prob": 0.0}, "pretrained_weights_path": null, "num_workers": 4, "pin_memory": false}

small_vit/H&E_AC_BCE/model_instance_1/model_state_dict.tar

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:a50b0224d8c9df859242f11bd9ffdfeb36f4b5bf100d0e35369a8a5912fb8553
+size 7025722

small_vit/H&E_AC_BCE/model_instance_2/config.json

@@ -0,0 +1 @@
+{"experiment_name": "1032_AC_BCE_experiment", "experiments_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/models/rotation", "norm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/images", "norm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/annotations", "unnorm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/images", "unnorm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/annotations", "labels_path": ["/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/image_rotations_HE.json"], "selection_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/assigned_split.json", "mapping_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/patient_mapping.json", "seed": 2, "iterations": 750000, "iterations_per_update": 20, "iterations_per_checkpoint": 5000, "save_all_checkpoints": false, "label_type": "class_prob", "gaussian_stdev": 2.5, "augmentation": {"oversample_small_angles": true, "small_angle_prob": 0.25, "small_angle_range": 30, "brightness": 0.2, "contrast": 0.2, "saturation": 0.2, "hue": 0.05}, "learning_rate": 0.0002, "weight_decay": 0.01, "lr_patience": 5, "lr_factor": 0.5, "loss_function": "BCE", "model_name": "ViT", "apply_masking": true, "model": {"patch_shape": 16, "input_dim": 3, "embed_dim": 128, "n_classes": 360, "depth": 8, "n_heads": 4, "mlp_ratio": 4, "use_pos_embed": true, "pytorch_attn_imp": false, "init_values": 1e-05, "max_tiles": 15000, "tile_dropout_prob": 0.0}, "pretrained_weights_path": null, "num_workers": 4, "pin_memory": false}

small_vit/H&E_AC_BCE/model_instance_2/model_state_dict.tar

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:d05de85a25af0054441ff6a83e6b852ef5774bf07487810a1b4255e7cee26692
+size 7025722

small_vit/H&E_AC_BCE/model_instance_3/config.json

@@ -0,0 +1 @@
+{"experiment_name": "1033_AC_BCE_experiment", "experiments_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/models/rotation", "norm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/images", "norm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/annotations", "unnorm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/images", "unnorm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/annotations", "labels_path": ["/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/image_rotations_HE.json"], "selection_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/assigned_split.json", "mapping_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/patient_mapping.json", "seed": 3, "iterations": 750000, "iterations_per_update": 20, "iterations_per_checkpoint": 5000, "save_all_checkpoints": false, "label_type": "class_prob", "gaussian_stdev": 2.5, "augmentation": {"oversample_small_angles": true, "small_angle_prob": 0.25, "small_angle_range": 30, "brightness": 0.2, "contrast": 0.2, "saturation": 0.2, "hue": 0.05}, "learning_rate": 0.0002, "weight_decay": 0.01, "lr_patience": 5, "lr_factor": 0.5, "loss_function": "BCE", "model_name": "ViT", "apply_masking": true, "model": {"patch_shape": 16, "input_dim": 3, "embed_dim": 128, "n_classes": 360, "depth": 8, "n_heads": 4, "mlp_ratio": 4, "use_pos_embed": true, "pytorch_attn_imp": false, "init_values": 1e-05, "max_tiles": 15000, "tile_dropout_prob": 0.0}, "pretrained_weights_path": null, "num_workers": 4, "pin_memory": false}

small_vit/H&E_AC_BCE/model_instance_3/model_state_dict.tar

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:aff5031c6f5208628fd1b8f1dfaaa96959add4145729b5cbd2a1c25193c20f54
+size 7025722

small_vit/H&E_AC_BCE/model_instance_4/config.json

@@ -0,0 +1 @@
+{"experiment_name": "1034_AC_BCE_experiment", "experiments_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/models/rotation", "norm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/images", "norm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/annotations", "unnorm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/images", "unnorm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/annotations", "labels_path": ["/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/image_rotations_HE.json"], "selection_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/assigned_split.json", "mapping_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/patient_mapping.json", "seed": 4, "iterations": 750000, "iterations_per_update": 20, "iterations_per_checkpoint": 5000, "save_all_checkpoints": false, "label_type": "class_prob", "gaussian_stdev": 2.5, "augmentation": {"oversample_small_angles": true, "small_angle_prob": 0.25, "small_angle_range": 30, "brightness": 0.2, "contrast": 0.2, "saturation": 0.2, "hue": 0.05}, "learning_rate": 0.0002, "weight_decay": 0.01, "lr_patience": 5, "lr_factor": 0.5, "loss_function": "BCE", "model_name": "ViT", "apply_masking": true, "model": {"patch_shape": 16, "input_dim": 3, "embed_dim": 128, "n_classes": 360, "depth": 8, "n_heads": 4, "mlp_ratio": 4, "use_pos_embed": true, "pytorch_attn_imp": false, "init_values": 1e-05, "max_tiles": 15000, "tile_dropout_prob": 0.0}, "pretrained_weights_path": null, "num_workers": 4, "pin_memory": false}

small_vit/H&E_AC_BCE/model_instance_4/model_state_dict.tar

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:45975c5988f178d6028d58b7bd7d9ee5836da340b8e622c4a9ba1b04a21e5b37
+size 7025722

small_vit/H&E_AC_BCE/model_instance_5/config.json

@@ -0,0 +1 @@
+{"experiment_name": "1035_AC_BCE_experiment", "experiments_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/models/rotation", "norm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/images", "norm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/annotations", "unnorm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/images", "unnorm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/annotations", "labels_path": ["/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/image_rotations_HE.json"], "selection_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/assigned_split.json", "mapping_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/patient_mapping.json", "seed": 5, "iterations": 750000, "iterations_per_update": 20, "iterations_per_checkpoint": 5000, "save_all_checkpoints": false, "label_type": "class_prob", "gaussian_stdev": 2.5, "augmentation": {"oversample_small_angles": true, "small_angle_prob": 0.25, "small_angle_range": 30, "brightness": 0.2, "contrast": 0.2, "saturation": 0.2, "hue": 0.05}, "learning_rate": 0.0002, "weight_decay": 0.01, "lr_patience": 5, "lr_factor": 0.5, "loss_function": "BCE", "model_name": "ViT", "apply_masking": true, "model": {"patch_shape": 16, "input_dim": 3, "embed_dim": 128, "n_classes": 360, "depth": 8, "n_heads": 4, "mlp_ratio": 4, "use_pos_embed": true, "pytorch_attn_imp": false, "init_values": 1e-05, "max_tiles": 15000, "tile_dropout_prob": 0.0}, "pretrained_weights_path": null, "num_workers": 4, "pin_memory": false}

small_vit/H&E_AC_BCE/model_instance_5/model_state_dict.tar

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:a59caa84a05dceb072af236d38daa90df2ede085a8d45ea9ae1adc1ec1aeb9da
+size 7025722

small_vit/H&E_AC_CCE/model_instance_1/config.json

@@ -0,0 +1,53 @@
+{
+    "experiment_name": "10001_AC_CCE_experiment",
+    "experiments_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/models/rotation",
+    "norm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/images",
+    "norm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/annotations",
+    "unnorm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/images",
+    "unnorm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/annotations",
+    "labels_path": [
+        "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/image_rotations_HE.json"
+    ],
+    "selection_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/assigned_split.json",
+    "mapping_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/patient_mapping.json",
+    "seed": 1,
+    "iterations": 750000,
+    "iterations_per_update": 20,
+    "iterations_per_checkpoint": 5000,
+    "save_all_checkpoints": false,
+    "label_type": "class_prob",
+    "gaussian_stdev": 2.5,
+    "augmentation": {
+        "oversample_small_angles": true,
+        "small_angle_prob": 0.25,
+        "small_angle_range": 30,
+        "brightness": 0.2,
+        "contrast": 0.2,
+        "saturation": 0.2,
+        "hue": 0.05
+    },
+    "learning_rate": 0.0002,
+    "weight_decay": 0.01,
+    "lr_patience": 5,
+    "lr_factor": 0.5,
+    "loss_function": "CCE",
+    "model_name": "ViT",
+    "apply_masking": true,
+    "model": {
+        "patch_shape": 16,
+        "input_dim": 3,
+        "embed_dim": 128,
+        "n_classes": 360,
+        "depth": 8,
+        "n_heads": 4,
+        "mlp_ratio": 4,
+        "use_pos_embed": true,
+        "pytorch_attn_imp": false,
+        "init_values": 1e-05,
+        "max_tiles": 15000,
+        "tile_dropout_prob": 0.0
+    },
+    "pretrained_weights_path": null,
+    "num_workers": 4,
+    "pin_memory": false
+}

small_vit/H&E_AC_CCE/model_instance_1/model_state_dict.tar

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:d18e39d24c300603681b71b287e28db9df37ab9e4e23215ff46190a1e0b59556
+size 7025722

small_vit/H&E_AC_CCE/model_instance_2/config.json

@@ -0,0 +1 @@
+{"experiment_name": "10002_AC_CCE_experiment", "experiments_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/models/rotation", "norm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/images", "norm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/annotations", "unnorm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/images", "unnorm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/annotations", "labels_path": ["/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/image_rotations_HE.json"], "selection_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/assigned_split.json", "mapping_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/patient_mapping.json", "seed": 2, "iterations": 750000, "iterations_per_update": 20, "iterations_per_checkpoint": 5000, "save_all_checkpoints": false, "label_type": "class_prob", "gaussian_stdev": 2.5, "augmentation": {"oversample_small_angles": true, "small_angle_prob": 0.25, "small_angle_range": 30, "brightness": 0.2, "contrast": 0.2, "saturation": 0.2, "hue": 0.05}, "learning_rate": 0.0002, "weight_decay": 0.01, "lr_patience": 5, "lr_factor": 0.5, "loss_function": "CCE", "model_name": "ViT", "apply_masking": true, "model": {"patch_shape": 16, "input_dim": 3, "embed_dim": 128, "n_classes": 360, "depth": 8, "n_heads": 4, "mlp_ratio": 4, "use_pos_embed": true, "pytorch_attn_imp": false, "init_values": 1e-05, "max_tiles": 15000, "tile_dropout_prob": 0.0}, "pretrained_weights_path": null, "num_workers": 4, "pin_memory": false}

small_vit/H&E_AC_CCE/model_instance_2/model_state_dict.tar

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:d26f5bbefecc43702ddcaaf3cd4419e7dc4405391795fb7ab975796be78296fc
+size 7025722

small_vit/H&E_AC_CCE/model_instance_3/config.json

@@ -0,0 +1 @@
+{"experiment_name": "10003_AC_CCE_experiment", "experiments_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/models/rotation", "norm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/images", "norm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/annotations", "unnorm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/images", "unnorm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/annotations", "labels_path": ["/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/image_rotations_HE.json"], "selection_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/assigned_split.json", "mapping_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/patient_mapping.json", "seed": 3, "iterations": 750000, "iterations_per_update": 20, "iterations_per_checkpoint": 5000, "save_all_checkpoints": false, "label_type": "class_prob", "gaussian_stdev": 2.5, "augmentation": {"oversample_small_angles": true, "small_angle_prob": 0.25, "small_angle_range": 30, "brightness": 0.2, "contrast": 0.2, "saturation": 0.2, "hue": 0.05}, "learning_rate": 0.0002, "weight_decay": 0.01, "lr_patience": 5, "lr_factor": 0.5, "loss_function": "CCE", "model_name": "ViT", "apply_masking": true, "model": {"patch_shape": 16, "input_dim": 3, "embed_dim": 128, "n_classes": 360, "depth": 8, "n_heads": 4, "mlp_ratio": 4, "use_pos_embed": true, "pytorch_attn_imp": false, "init_values": 1e-05, "max_tiles": 15000, "tile_dropout_prob": 0.0}, "pretrained_weights_path": null, "num_workers": 4, "pin_memory": false}

small_vit/H&E_AC_CCE/model_instance_3/model_state_dict.tar

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:35b5fcc2b75cd92027dbf4db0d525407bed739cea47340c52252c7f71b1291e7
+size 7025722

small_vit/H&E_AC_CCE/model_instance_4/config.json

@@ -0,0 +1 @@
+{"experiment_name": "10004_AC_CCE_experiment", "experiments_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/models/rotation", "norm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/images", "norm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/annotations", "unnorm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/images", "unnorm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/annotations", "labels_path": ["/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/image_rotations_HE.json"], "selection_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/assigned_split.json", "mapping_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/patient_mapping.json", "seed": 4, "iterations": 750000, "iterations_per_update": 20, "iterations_per_checkpoint": 5000, "save_all_checkpoints": false, "label_type": "class_prob", "gaussian_stdev": 2.5, "augmentation": {"oversample_small_angles": true, "small_angle_prob": 0.25, "small_angle_range": 30, "brightness": 0.2, "contrast": 0.2, "saturation": 0.2, "hue": 0.05}, "learning_rate": 0.0002, "weight_decay": 0.01, "lr_patience": 5, "lr_factor": 0.5, "loss_function": "CCE", "model_name": "ViT", "apply_masking": true, "model": {"patch_shape": 16, "input_dim": 3, "embed_dim": 128, "n_classes": 360, "depth": 8, "n_heads": 4, "mlp_ratio": 4, "use_pos_embed": true, "pytorch_attn_imp": false, "init_values": 1e-05, "max_tiles": 15000, "tile_dropout_prob": 0.0}, "pretrained_weights_path": null, "num_workers": 4, "pin_memory": false}

small_vit/H&E_AC_CCE/model_instance_4/model_state_dict.tar

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:3850fb63b0626b403cc390ca2993a940128be01a7d93161e11150619f21f7a10
+size 7025722

small_vit/H&E_AC_CCE/model_instance_5/config.json

@@ -0,0 +1 @@
+{"experiment_name": "10005_AC_CCE_experiment", "experiments_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/models/rotation", "norm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/images", "norm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/annotations", "unnorm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/images", "unnorm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/annotations", "labels_path": ["/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/image_rotations_HE.json"], "selection_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/assigned_split.json", "mapping_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/patient_mapping.json", "seed": 5, "iterations": 750000, "iterations_per_update": 20, "iterations_per_checkpoint": 5000, "save_all_checkpoints": false, "label_type": "class_prob", "gaussian_stdev": 2.5, "augmentation": {"oversample_small_angles": true, "small_angle_prob": 0.25, "small_angle_range": 30, "brightness": 0.2, "contrast": 0.2, "saturation": 0.2, "hue": 0.05}, "learning_rate": 0.0002, "weight_decay": 0.01, "lr_patience": 5, "lr_factor": 0.5, "loss_function": "CCE", "model_name": "ViT", "apply_masking": true, "model": {"patch_shape": 16, "input_dim": 3, "embed_dim": 128, "n_classes": 360, "depth": 8, "n_heads": 4, "mlp_ratio": 4, "use_pos_embed": true, "pytorch_attn_imp": false, "init_values": 1e-05, "max_tiles": 15000, "tile_dropout_prob": 0.0}, "pretrained_weights_path": null, "num_workers": 4, "pin_memory": false}

small_vit/H&E_AC_CCE/model_instance_5/model_state_dict.tar

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:7b93c4f17acb7e5a78e84060dd55572117d9e537df8fc9528389aa127c9c12fa
+size 7025722

small_vit/H&E_AR_CS/model_instance_1/config.json

@@ -0,0 +1,53 @@
+{
+    "experiment_name": "1016_AR_CS_experiment",
+    "experiments_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/models/rotation",
+    "norm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/images",
+    "norm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/annotations",
+    "unnorm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/images",
+    "unnorm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/annotations",
+    "labels_path": [
+        "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/image_rotations_HE.json"
+    ],
+    "selection_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/assigned_split.json",
+    "mapping_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/patient_mapping.json",
+    "seed": 1,
+    "iterations": 500000,
+    "iterations_per_update": 20,
+    "iterations_per_checkpoint": 5000,
+    "save_all_checkpoints": false,
+    "label_type": "radians",
+    "gaussian_stdev": 2.5,
+    "augmentation": {
+        "oversample_small_angles": true,
+        "small_angle_prob": 0.25,
+        "small_angle_range": 30,
+        "brightness": 0.2,
+        "contrast": 0.2,
+        "saturation": 0.2,
+        "hue": 0.05
+    },
+    "learning_rate": 0.0002,
+    "weight_decay": 0.01,
+    "lr_patience": 5,
+    "lr_factor": 0.5,
+    "loss_function": "CS",
+    "model_name": "ViT",
+    "apply_masking": true,
+    "model": {
+        "patch_shape": 16,
+        "input_dim": 3,
+        "embed_dim": 128,
+        "n_classes": 1,
+        "depth": 8,
+        "n_heads": 4,
+        "mlp_ratio": 4,
+        "use_pos_embed": true,
+        "pytorch_attn_imp": false,
+        "init_values": 1e-05,
+        "max_tiles": 15000,
+        "tile_dropout_prob": 0.0
+    },
+    "pretrained_weights_path": null,
+    "num_workers": 4,
+    "pin_memory": false
+}

small_vit/H&E_AR_CS/model_instance_1/model_state_dict.tar

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:46664bda79dac254c27a102c8e876df53eadbaa59ead52180d57a668148ea7fa
+size 6932410

small_vit/H&E_AR_CS/model_instance_2/config.json

@@ -0,0 +1 @@
+{"experiment_name": "1017_AR_CS_experiment", "experiments_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/models/rotation", "norm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/images", "norm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/annotations", "unnorm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/images", "unnorm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/annotations", "labels_path": ["/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/image_rotations_HE.json"], "selection_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/assigned_split.json", "mapping_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/patient_mapping.json", "seed": 2, "iterations": 500000, "iterations_per_update": 20, "iterations_per_checkpoint": 5000, "save_all_checkpoints": false, "label_type": "radians", "gaussian_stdev": 2.5, "augmentation": {"oversample_small_angles": true, "small_angle_prob": 0.25, "small_angle_range": 30, "brightness": 0.2, "contrast": 0.2, "saturation": 0.2, "hue": 0.05}, "learning_rate": 0.0002, "weight_decay": 0.01, "lr_patience": 5, "lr_factor": 0.5, "loss_function": "CS", "model_name": "ViT", "apply_masking": true, "model": {"patch_shape": 16, "input_dim": 3, "embed_dim": 128, "n_classes": 1, "depth": 8, "n_heads": 4, "mlp_ratio": 4, "use_pos_embed": true, "pytorch_attn_imp": false, "init_values": 1e-05, "max_tiles": 15000, "tile_dropout_prob": 0.0}, "pretrained_weights_path": null, "num_workers": 4, "pin_memory": false}

small_vit/H&E_AR_CS/model_instance_2/model_state_dict.tar

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:c1aa68a2061451cf80822bb09766af8924d5e413ec3d1a57abbed812423d9380
+size 6932410

small_vit/H&E_AR_CS/model_instance_3/config.json

@@ -0,0 +1 @@
+{"experiment_name": "1018_AR_CS_experiment", "experiments_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/models/rotation", "norm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/images", "norm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/annotations", "unnorm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/images", "unnorm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/annotations", "labels_path": ["/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/image_rotations_HE.json"], "selection_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/assigned_split.json", "mapping_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/patient_mapping.json", "seed": 3, "iterations": 500000, "iterations_per_update": 20, "iterations_per_checkpoint": 5000, "save_all_checkpoints": false, "label_type": "radians", "gaussian_stdev": 2.5, "augmentation": {"oversample_small_angles": true, "small_angle_prob": 0.25, "small_angle_range": 30, "brightness": 0.2, "contrast": 0.2, "saturation": 0.2, "hue": 0.05}, "learning_rate": 0.0002, "weight_decay": 0.01, "lr_patience": 5, "lr_factor": 0.5, "loss_function": "CS", "model_name": "ViT", "apply_masking": true, "model": {"patch_shape": 16, "input_dim": 3, "embed_dim": 128, "n_classes": 1, "depth": 8, "n_heads": 4, "mlp_ratio": 4, "use_pos_embed": true, "pytorch_attn_imp": false, "init_values": 1e-05, "max_tiles": 15000, "tile_dropout_prob": 0.0}, "pretrained_weights_path": null, "num_workers": 4, "pin_memory": false}

small_vit/H&E_AR_CS/model_instance_3/model_state_dict.tar

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:a3aabf5589c7ff44dcb3056ff232f8c3dc67a75c39096e46a316084ed1620397
+size 6932410

small_vit/H&E_AR_CS/model_instance_4/config.json

@@ -0,0 +1 @@
+{"experiment_name": "1019_AR_CS_experiment", "experiments_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/models/rotation", "norm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/images", "norm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/annotations", "unnorm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/images", "unnorm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/annotations", "labels_path": ["/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/image_rotations_HE.json"], "selection_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/assigned_split.json", "mapping_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/patient_mapping.json", "seed": 4, "iterations": 500000, "iterations_per_update": 20, "iterations_per_checkpoint": 5000, "save_all_checkpoints": false, "label_type": "radians", "gaussian_stdev": 2.5, "augmentation": {"oversample_small_angles": true, "small_angle_prob": 0.25, "small_angle_range": 30, "brightness": 0.2, "contrast": 0.2, "saturation": 0.2, "hue": 0.05}, "learning_rate": 0.0002, "weight_decay": 0.01, "lr_patience": 5, "lr_factor": 0.5, "loss_function": "CS", "model_name": "ViT", "apply_masking": true, "model": {"patch_shape": 16, "input_dim": 3, "embed_dim": 128, "n_classes": 1, "depth": 8, "n_heads": 4, "mlp_ratio": 4, "use_pos_embed": true, "pytorch_attn_imp": false, "init_values": 1e-05, "max_tiles": 15000, "tile_dropout_prob": 0.0}, "pretrained_weights_path": null, "num_workers": 4, "pin_memory": false}

small_vit/H&E_AR_CS/model_instance_4/model_state_dict.tar

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:083d89d74db2fd4f5402cd43440e96fce7d9927046ab774b60388e317a4f5827
+size 6932410

small_vit/H&E_AR_CS/model_instance_5/config.json

@@ -0,0 +1 @@
+{"experiment_name": "1020_AR_CS_experiment", "experiments_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/models/rotation", "norm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/images", "norm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/annotations", "unnorm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/images", "unnorm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/annotations", "labels_path": ["/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/image_rotations_HE.json"], "selection_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/assigned_split.json", "mapping_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/patient_mapping.json", "seed": 5, "iterations": 500000, "iterations_per_update": 20, "iterations_per_checkpoint": 5000, "save_all_checkpoints": false, "label_type": "radians", "gaussian_stdev": 2.5, "augmentation": {"oversample_small_angles": true, "small_angle_prob": 0.25, "small_angle_range": 30, "brightness": 0.2, "contrast": 0.2, "saturation": 0.2, "hue": 0.05}, "learning_rate": 0.0002, "weight_decay": 0.01, "lr_patience": 5, "lr_factor": 0.5, "loss_function": "CS", "model_name": "ViT", "apply_masking": true, "model": {"patch_shape": 16, "input_dim": 3, "embed_dim": 128, "n_classes": 1, "depth": 8, "n_heads": 4, "mlp_ratio": 4, "use_pos_embed": true, "pytorch_attn_imp": false, "init_values": 1e-05, "max_tiles": 15000, "tile_dropout_prob": 0.0}, "pretrained_weights_path": null, "num_workers": 4, "pin_memory": false}

small_vit/H&E_AR_CS/model_instance_5/model_state_dict.tar

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:cd48e9a6b0b41bcc15c3a97db2b6a4e72809b8d7e0d84693e32e68fe446002b1
+size 6932410

small_vit/H&E_CR_CS/model_instance_1/config.json

@@ -0,0 +1,53 @@
+{
+    "experiment_name": "1021_CR_CS_experiment",
+    "experiments_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/models/rotation",
+    "norm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/images",
+    "norm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/annotations",
+    "unnorm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/images",
+    "unnorm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/annotations",
+    "labels_path": [
+        "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/image_rotations_HE.json"
+    ],
+    "selection_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/assigned_split.json",
+    "mapping_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/patient_mapping.json",
+    "seed": 1,
+    "iterations": 500000,
+    "iterations_per_update": 20,
+    "iterations_per_checkpoint": 5000,
+    "save_all_checkpoints": false,
+    "label_type": "coordinate",
+    "gaussian_stdev": 2.5,
+    "augmentation": {
+        "oversample_small_angles": true,
+        "small_angle_prob": 0.25,
+        "small_angle_range": 30,
+        "brightness": 0.2,
+        "contrast": 0.2,
+        "saturation": 0.2,
+        "hue": 0.05
+    },
+    "learning_rate": 0.0002,
+    "weight_decay": 0.01,
+    "lr_patience": 5,
+    "lr_factor": 0.5,
+    "loss_function": "CS2",
+    "model_name": "ViT",
+    "apply_masking": true,
+    "model": {
+        "patch_shape": 16,
+        "input_dim": 3,
+        "embed_dim": 128,
+        "n_classes": 2,
+        "depth": 8,
+        "n_heads": 4,
+        "mlp_ratio": 4,
+        "use_pos_embed": true,
+        "pytorch_attn_imp": false,
+        "init_values": 1e-05,
+        "max_tiles": 15000,
+        "tile_dropout_prob": 0.0
+    },
+    "pretrained_weights_path": null,
+    "num_workers": 4,
+    "pin_memory": false
+}

small_vit/H&E_CR_CS/model_instance_1/model_state_dict.tar

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:83f4fb0585a99363afc1d7c8a45a88f41c6f98789725f0d138101d204967105d
+size 6932666

small_vit/H&E_CR_CS/model_instance_2/config.json

@@ -0,0 +1 @@
+{"experiment_name": "1022_CR_CS_experiment", "experiments_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/models/rotation", "norm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/images", "norm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/annotations", "unnorm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/images", "unnorm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/annotations", "labels_path": ["/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/image_rotations_HE.json"], "selection_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/assigned_split.json", "mapping_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/patient_mapping.json", "seed": 2, "iterations": 500000, "iterations_per_update": 20, "iterations_per_checkpoint": 5000, "save_all_checkpoints": false, "label_type": "coordinate", "gaussian_stdev": 2.5, "augmentation": {"oversample_small_angles": true, "small_angle_prob": 0.25, "small_angle_range": 30, "brightness": 0.2, "contrast": 0.2, "saturation": 0.2, "hue": 0.05}, "learning_rate": 0.0002, "weight_decay": 0.01, "lr_patience": 5, "lr_factor": 0.5, "loss_function": "CS2", "model_name": "ViT", "apply_masking": true, "model": {"patch_shape": 16, "input_dim": 3, "embed_dim": 128, "n_classes": 2, "depth": 8, "n_heads": 4, "mlp_ratio": 4, "use_pos_embed": true, "pytorch_attn_imp": false, "init_values": 1e-05, "max_tiles": 15000, "tile_dropout_prob": 0.0}, "pretrained_weights_path": null, "num_workers": 4, "pin_memory": false}

small_vit/H&E_CR_CS/model_instance_2/model_state_dict.tar

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:3c4fa8ecd3a7ec8c0d90ba421e01e1afa2088cf333345ef634e0fa1ec36313b8
+size 6932666

small_vit/H&E_CR_CS/model_instance_3/config.json

@@ -0,0 +1 @@
+{"experiment_name": "1023_CR_CS_experiment", "experiments_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/models/rotation", "norm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/images", "norm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/annotations", "unnorm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/images", "unnorm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/annotations", "labels_path": ["/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/image_rotations_HE.json"], "selection_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/assigned_split.json", "mapping_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/patient_mapping.json", "seed": 3, "iterations": 500000, "iterations_per_update": 20, "iterations_per_checkpoint": 5000, "save_all_checkpoints": false, "label_type": "coordinate", "gaussian_stdev": 2.5, "augmentation": {"oversample_small_angles": true, "small_angle_prob": 0.25, "small_angle_range": 30, "brightness": 0.2, "contrast": 0.2, "saturation": 0.2, "hue": 0.05}, "learning_rate": 0.0002, "weight_decay": 0.01, "lr_patience": 5, "lr_factor": 0.5, "loss_function": "CS2", "model_name": "ViT", "apply_masking": true, "model": {"patch_shape": 16, "input_dim": 3, "embed_dim": 128, "n_classes": 2, "depth": 8, "n_heads": 4, "mlp_ratio": 4, "use_pos_embed": true, "pytorch_attn_imp": false, "init_values": 1e-05, "max_tiles": 15000, "tile_dropout_prob": 0.0}, "pretrained_weights_path": null, "num_workers": 4, "pin_memory": false}

small_vit/H&E_CR_CS/model_instance_3/model_state_dict.tar

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:37404ba1039ce4ec21a0633f8260e197998d556dc6470c44d37ce4d1cfe11539
+size 6932666

small_vit/H&E_CR_CS/model_instance_4/config.json

@@ -0,0 +1 @@
+{"experiment_name": "1024_CR_CS_experiment", "experiments_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/models/rotation", "norm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/images", "norm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/annotations", "unnorm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/images", "unnorm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/annotations", "labels_path": ["/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/image_rotations_HE.json"], "selection_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/assigned_split.json", "mapping_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/patient_mapping.json", "seed": 4, "iterations": 500000, "iterations_per_update": 20, "iterations_per_checkpoint": 5000, "save_all_checkpoints": false, "label_type": "coordinate", "gaussian_stdev": 2.5, "augmentation": {"oversample_small_angles": true, "small_angle_prob": 0.25, "small_angle_range": 30, "brightness": 0.2, "contrast": 0.2, "saturation": 0.2, "hue": 0.05}, "learning_rate": 0.0002, "weight_decay": 0.01, "lr_patience": 5, "lr_factor": 0.5, "loss_function": "CS2", "model_name": "ViT", "apply_masking": true, "model": {"patch_shape": 16, "input_dim": 3, "embed_dim": 128, "n_classes": 2, "depth": 8, "n_heads": 4, "mlp_ratio": 4, "use_pos_embed": true, "pytorch_attn_imp": false, "init_values": 1e-05, "max_tiles": 15000, "tile_dropout_prob": 0.0}, "pretrained_weights_path": null, "num_workers": 4, "pin_memory": false}

small_vit/H&E_CR_CS/model_instance_4/model_state_dict.tar

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:103971d64456ec77f28859cae4daf0662e9e409486d17d4af0fdf0fd690cdc5e
+size 6932666

small_vit/H&E_CR_CS/model_instance_5/config.json

@@ -0,0 +1 @@
+{"experiment_name": "1025_CR_CS_experiment", "experiments_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/models/rotation", "norm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/images", "norm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/annotations", "unnorm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/images", "unnorm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/annotations", "labels_path": ["/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/image_rotations_HE.json"], "selection_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/assigned_split.json", "mapping_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/patient_mapping.json", "seed": 5, "iterations": 500000, "iterations_per_update": 20, "iterations_per_checkpoint": 5000, "save_all_checkpoints": false, "label_type": "coordinate", "gaussian_stdev": 2.5, "augmentation": {"oversample_small_angles": true, "small_angle_prob": 0.25, "small_angle_range": 30, "brightness": 0.2, "contrast": 0.2, "saturation": 0.2, "hue": 0.05}, "learning_rate": 0.0002, "weight_decay": 0.01, "lr_patience": 5, "lr_factor": 0.5, "loss_function": "CS2", "model_name": "ViT", "apply_masking": true, "model": {"patch_shape": 16, "input_dim": 3, "embed_dim": 128, "n_classes": 2, "depth": 8, "n_heads": 4, "mlp_ratio": 4, "use_pos_embed": true, "pytorch_attn_imp": false, "init_values": 1e-05, "max_tiles": 15000, "tile_dropout_prob": 0.0}, "pretrained_weights_path": null, "num_workers": 4, "pin_memory": false}

small_vit/H&E_CR_CS/model_instance_5/model_state_dict.tar

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:ff07c5c29755286ebcc7a8c6622dc0430d0fda8702cd662c449a56f9a9ecc09c
+size 6932666

small_vit/H&E_CR_MAE/model_instance_1/config.json

@@ -0,0 +1 @@
+{"experiment_name": "1011_CR_MAE_experiment", "experiments_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/models/rotation", "norm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/images", "norm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/annotations", "unnorm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/images", "unnorm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/annotations", "labels_path": ["/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/image_rotations_HE.json"], "selection_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/assigned_split.json", "mapping_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/patient_mapping.json", "seed": 1, "iterations": 500000, "iterations_per_update": 20, "iterations_per_checkpoint": 5000, "save_all_checkpoints": false, "label_type": "coordinate", "gaussian_stdev": 2.5, "augmentation": {"oversample_small_angles": true, "small_angle_prob": 0.25, "small_angle_range": 30, "brightness": 0.2, "contrast": 0.2, "saturation": 0.2, "hue": 0.05}, "learning_rate": 0.0002, "weight_decay": 0.01, "lr_patience": 5, "lr_factor": 0.5, "loss_function": "MAE", "model_name": "ViT", "apply_masking": true, "model": {"patch_shape": 16, "input_dim": 3, "embed_dim": 128, "n_classes": 2, "depth": 8, "n_heads": 4, "mlp_ratio": 4, "use_pos_embed": true, "pytorch_attn_imp": false, "init_values": 1e-05, "max_tiles": 15000, "tile_dropout_prob": 0.0}, "pretrained_weights_path": null, "num_workers": 4, "pin_memory": false}

small_vit/H&E_CR_MAE/model_instance_1/model_state_dict.tar

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:8d2d2cc74a1ecce53218ccf630ede3c2da0be3412c24fc895b3a543f4c5fa857
+size 6932666

small_vit/H&E_CR_MAE/model_instance_2/config.json

@@ -0,0 +1 @@
+{"experiment_name": "1012_CR_MAE_experiment", "experiments_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/models/rotation", "norm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/images", "norm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/annotations", "unnorm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/images", "unnorm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/annotations", "labels_path": ["/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/image_rotations_HE.json"], "selection_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/assigned_split.json", "mapping_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/patient_mapping.json", "seed": 2, "iterations": 500000, "iterations_per_update": 20, "iterations_per_checkpoint": 5000, "save_all_checkpoints": false, "label_type": "coordinate", "gaussian_stdev": 2.5, "augmentation": {"oversample_small_angles": true, "small_angle_prob": 0.25, "small_angle_range": 30, "brightness": 0.2, "contrast": 0.2, "saturation": 0.2, "hue": 0.05}, "learning_rate": 0.0002, "weight_decay": 0.01, "lr_patience": 5, "lr_factor": 0.5, "loss_function": "MAE", "model_name": "ViT", "apply_masking": true, "model": {"patch_shape": 16, "input_dim": 3, "embed_dim": 128, "n_classes": 2, "depth": 8, "n_heads": 4, "mlp_ratio": 4, "use_pos_embed": true, "pytorch_attn_imp": false, "init_values": 1e-05, "max_tiles": 15000, "tile_dropout_prob": 0.0}, "pretrained_weights_path": null, "num_workers": 4, "pin_memory": false}

small_vit/H&E_CR_MAE/model_instance_2/model_state_dict.tar

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:76662fe3acfc7c450491f3b7c4ce2378f213391baf6f592661bb21b5ae91d0b4
+size 6932666

small_vit/H&E_CR_MAE/model_instance_3/config.json

@@ -0,0 +1 @@
+{"experiment_name": "1013_CR_MAE_experiment", "experiments_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/models/rotation", "norm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/images", "norm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/annotations", "unnorm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/images", "unnorm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/annotations", "labels_path": ["/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/image_rotations_HE.json"], "selection_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/assigned_split.json", "mapping_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/patient_mapping.json", "seed": 3, "iterations": 500000, "iterations_per_update": 20, "iterations_per_checkpoint": 5000, "save_all_checkpoints": false, "label_type": "coordinate", "gaussian_stdev": 2.5, "augmentation": {"oversample_small_angles": true, "small_angle_prob": 0.25, "small_angle_range": 30, "brightness": 0.2, "contrast": 0.2, "saturation": 0.2, "hue": 0.05}, "learning_rate": 0.0002, "weight_decay": 0.01, "lr_patience": 5, "lr_factor": 0.5, "loss_function": "MAE", "model_name": "ViT", "apply_masking": true, "model": {"patch_shape": 16, "input_dim": 3, "embed_dim": 128, "n_classes": 2, "depth": 8, "n_heads": 4, "mlp_ratio": 4, "use_pos_embed": true, "pytorch_attn_imp": false, "init_values": 1e-05, "max_tiles": 15000, "tile_dropout_prob": 0.0}, "pretrained_weights_path": null, "num_workers": 4, "pin_memory": false}

small_vit/H&E_CR_MAE/model_instance_3/model_state_dict.tar

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:dced447fa8109e9a6fab9cb0e9ee681a60da9c428c1268093f74a31e33631dfe
+size 6932666

small_vit/H&E_CR_MAE/model_instance_4/config.json

@@ -0,0 +1 @@
+{"experiment_name": "1014_CR_MAE_experiment", "experiments_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/models/rotation", "norm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/images", "norm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/annotations", "unnorm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/images", "unnorm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/annotations", "labels_path": ["/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/image_rotations_HE.json"], "selection_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/assigned_split.json", "mapping_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/patient_mapping.json", "seed": 4, "iterations": 500000, "iterations_per_update": 20, "iterations_per_checkpoint": 5000, "save_all_checkpoints": false, "label_type": "coordinate", "gaussian_stdev": 2.5, "augmentation": {"oversample_small_angles": true, "small_angle_prob": 0.25, "small_angle_range": 30, "brightness": 0.2, "contrast": 0.2, "saturation": 0.2, "hue": 0.05}, "learning_rate": 0.0002, "weight_decay": 0.01, "lr_patience": 5, "lr_factor": 0.5, "loss_function": "MAE", "model_name": "ViT", "apply_masking": true, "model": {"patch_shape": 16, "input_dim": 3, "embed_dim": 128, "n_classes": 2, "depth": 8, "n_heads": 4, "mlp_ratio": 4, "use_pos_embed": true, "pytorch_attn_imp": false, "init_values": 1e-05, "max_tiles": 15000, "tile_dropout_prob": 0.0}, "pretrained_weights_path": null, "num_workers": 4, "pin_memory": false}

small_vit/H&E_CR_MAE/model_instance_4/model_state_dict.tar

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:fde5e5f5902e9b3eb46ab39f93ff9c8f61bda5f36ecc1164f567b7b298ad59c7
+size 6932666

small_vit/H&E_CR_MAE/model_instance_5/config.json

@@ -0,0 +1 @@
+{"experiment_name": "1015_CR_MAE_experiment", "experiments_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/models/rotation", "norm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/images", "norm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/annotations", "unnorm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/images", "unnorm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/annotations", "labels_path": ["/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/image_rotations_HE.json"], "selection_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/assigned_split.json", "mapping_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/patient_mapping.json", "seed": 5, "iterations": 500000, "iterations_per_update": 20, "iterations_per_checkpoint": 5000, "save_all_checkpoints": false, "label_type": "coordinate", "gaussian_stdev": 2.5, "augmentation": {"oversample_small_angles": true, "small_angle_prob": 0.25, "small_angle_range": 30, "brightness": 0.2, "contrast": 0.2, "saturation": 0.2, "hue": 0.05}, "learning_rate": 0.0002, "weight_decay": 0.01, "lr_patience": 5, "lr_factor": 0.5, "loss_function": "MAE", "model_name": "ViT", "apply_masking": true, "model": {"patch_shape": 16, "input_dim": 3, "embed_dim": 128, "n_classes": 2, "depth": 8, "n_heads": 4, "mlp_ratio": 4, "use_pos_embed": true, "pytorch_attn_imp": false, "init_values": 1e-05, "max_tiles": 15000, "tile_dropout_prob": 0.0}, "pretrained_weights_path": null, "num_workers": 4, "pin_memory": false}

small_vit/H&E_CR_MAE/model_instance_5/model_state_dict.tar

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:f127ce58f615f9f13979b14da51d3469e2d929ac26477554eb7f7a933b557779
+size 6932666