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Browse files- ablation_experiment/no_masking/H&E_AC_CCE/model_instance_1/config.json +53 -0
- ablation_experiment/no_masking/H&E_AC_CCE/model_instance_1/model_state_dict.tar +3 -0
- ablation_experiment/no_masking/H&E_AC_CCE/model_instance_2/config.json +1 -0
- ablation_experiment/no_masking/H&E_AC_CCE/model_instance_2/model_state_dict.tar +3 -0
- ablation_experiment/no_masking/H&E_AC_CCE/model_instance_3/config.json +1 -0
- ablation_experiment/no_masking/H&E_AC_CCE/model_instance_3/model_state_dict.tar +3 -0
- ablation_experiment/no_masking/H&E_AC_CCE/model_instance_4/config.json +1 -0
- ablation_experiment/no_masking/H&E_AC_CCE/model_instance_4/model_state_dict.tar +3 -0
- ablation_experiment/no_masking/H&E_AC_CCE/model_instance_5/config.json +1 -0
- ablation_experiment/no_masking/H&E_AC_CCE/model_instance_5/model_state_dict.tar +3 -0
- ablation_experiment/no_pos_enc/H&E_AC_CCE/model_instance_1/config.json +1 -0
- ablation_experiment/no_pos_enc/H&E_AC_CCE/model_instance_1/model_state_dict.tar +3 -0
- ablation_experiment/no_pos_enc/H&E_AC_CCE/model_instance_2/config.json +1 -0
- ablation_experiment/no_pos_enc/H&E_AC_CCE/model_instance_2/model_state_dict.tar +3 -0
- ablation_experiment/no_pos_enc/H&E_AC_CCE/model_instance_3/config.json +1 -0
- ablation_experiment/no_pos_enc/H&E_AC_CCE/model_instance_3/model_state_dict.tar +3 -0
- ablation_experiment/no_pos_enc/H&E_AC_CCE/model_instance_4/config.json +1 -0
- ablation_experiment/no_pos_enc/H&E_AC_CCE/model_instance_4/model_state_dict.tar +3 -0
- ablation_experiment/no_pos_enc/H&E_AC_CCE/model_instance_5/config.json +1 -0
- ablation_experiment/no_pos_enc/H&E_AC_CCE/model_instance_5/model_state_dict.tar +3 -0
- ablation_experiment/no_pos_enc_no_masking/H&E_AC_CCE/7006_AC_CCE_experiment/config.json +1 -0
- ablation_experiment/no_pos_enc_no_masking/H&E_AC_CCE/7006_AC_CCE_experiment/model_state_dict.tar +3 -0
- ablation_experiment/no_pos_enc_no_masking/H&E_AC_CCE/7007_AC_CCE_experiment/config.json +1 -0
- ablation_experiment/no_pos_enc_no_masking/H&E_AC_CCE/7007_AC_CCE_experiment/model_state_dict.tar +3 -0
- ablation_experiment/no_pos_enc_no_masking/H&E_AC_CCE/7008_AC_CCE_experiment/config.json +1 -0
- ablation_experiment/no_pos_enc_no_masking/H&E_AC_CCE/7008_AC_CCE_experiment/model_state_dict.tar +3 -0
- ablation_experiment/no_pos_enc_no_masking/H&E_AC_CCE/7009_AC_CCE_experiment/config.json +1 -0
- ablation_experiment/no_pos_enc_no_masking/H&E_AC_CCE/7009_AC_CCE_experiment/model_state_dict.tar +3 -0
- ablation_experiment/no_pos_enc_no_masking/H&E_AC_CCE/7010_AC_CCE_experiment/config.json +1 -0
- ablation_experiment/no_pos_enc_no_masking/H&E_AC_CCE/7010_AC_CCE_experiment/model_state_dict.tar +3 -0
ablation_experiment/no_masking/H&E_AC_CCE/model_instance_1/config.json
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{
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"experiment_name": "7001_AC_CCE_experiment",
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"experiments_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/models/rotation",
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"norm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unmasked_normalized/images",
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"norm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unmasked_normalized/annotations",
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"unnorm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unmasked_unnormalized/images",
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"unnorm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unmasked_unnormalized/annotations",
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"labels_path": [
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"/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/image_rotations_HE.json"
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],
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"selection_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/assigned_split.json",
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"mapping_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/patient_mapping.json",
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"seed": 1,
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"iterations": 750000,
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"iterations_per_update": 20,
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"iterations_per_checkpoint": 5000,
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"save_all_checkpoints": false,
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"label_type": "class_prob",
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"gaussian_stdev": 2.5,
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"augmentation": {
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"oversample_small_angles": true,
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"small_angle_prob": 0.25,
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"small_angle_range": 30,
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"brightness": 0.2,
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"contrast": 0.2,
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"saturation": 0.2,
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"hue": 0.05
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},
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"learning_rate": 2e-05,
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"weight_decay": 0.01,
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"lr_patience": 5,
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"lr_factor": 0.5,
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"loss_function": "CCE",
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"model_name": "ViT",
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"apply_masking": false,
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"model": {
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"patch_shape": 16,
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"input_dim": 3,
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"embed_dim": 256,
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"n_classes": 360,
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"depth": 14,
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"n_heads": 4,
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"mlp_ratio": 5,
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"use_pos_embed": true,
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"pytorch_attn_imp": false,
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"init_values": 1e-05,
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"max_tiles": 15000,
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"tile_dropout_prob": 0.0
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},
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"pretrained_weights_path": "/hpc/dlab_skin_ai/repositories/tissue_matching/rotation/vit_wee_patch16_reg1_gap_256.sbb_in1k.pth",
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"num_workers": 4,
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"pin_memory": false
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}
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ablation_experiment/no_masking/H&E_AC_CCE/model_instance_1/model_state_dict.tar
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ablation_experiment/no_masking/H&E_AC_CCE/model_instance_2/config.json
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{"experiment_name": "7002_AC_CCE_experiment", "experiments_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/models/rotation", "norm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unmasked_normalized/images", "norm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unmasked_normalized/annotations", "unnorm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unmasked_unnormalized/images", "unnorm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unmasked_unnormalized/annotations", "labels_path": ["/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/image_rotations_HE.json"], "selection_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/assigned_split.json", "mapping_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/patient_mapping.json", "seed": 2, "iterations": 750000, "iterations_per_update": 20, "iterations_per_checkpoint": 5000, "save_all_checkpoints": false, "label_type": "class_prob", "gaussian_stdev": 2.5, "augmentation": {"oversample_small_angles": true, "small_angle_prob": 0.25, "small_angle_range": 30, "brightness": 0.2, "contrast": 0.2, "saturation": 0.2, "hue": 0.05}, "learning_rate": 2e-05, "weight_decay": 0.01, "lr_patience": 5, "lr_factor": 0.5, "loss_function": "CCE", "model_name": "ViT", "apply_masking": false, "model": {"patch_shape": 16, "input_dim": 3, "embed_dim": 256, "n_classes": 360, "depth": 14, "n_heads": 4, "mlp_ratio": 5, "use_pos_embed": true, "pytorch_attn_imp": false, "init_values": 1e-05, "max_tiles": 15000, "tile_dropout_prob": 0.0}, "pretrained_weights_path": "/hpc/dlab_skin_ai/repositories/tissue_matching/rotation/vit_wee_patch16_reg1_gap_256.sbb_in1k.pth", "num_workers": 4, "pin_memory": false}
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ablation_experiment/no_masking/H&E_AC_CCE/model_instance_2/model_state_dict.tar
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ablation_experiment/no_masking/H&E_AC_CCE/model_instance_3/config.json
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{"experiment_name": "7003_AC_CCE_experiment", "experiments_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/models/rotation", "norm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unmasked_normalized/images", "norm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unmasked_normalized/annotations", "unnorm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unmasked_unnormalized/images", "unnorm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unmasked_unnormalized/annotations", "labels_path": ["/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/image_rotations_HE.json"], "selection_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/assigned_split.json", "mapping_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/patient_mapping.json", "seed": 3, "iterations": 750000, "iterations_per_update": 20, "iterations_per_checkpoint": 5000, "save_all_checkpoints": false, "label_type": "class_prob", "gaussian_stdev": 2.5, "augmentation": {"oversample_small_angles": true, "small_angle_prob": 0.25, "small_angle_range": 30, "brightness": 0.2, "contrast": 0.2, "saturation": 0.2, "hue": 0.05}, "learning_rate": 2e-05, "weight_decay": 0.01, "lr_patience": 5, "lr_factor": 0.5, "loss_function": "CCE", "model_name": "ViT", "apply_masking": false, "model": {"patch_shape": 16, "input_dim": 3, "embed_dim": 256, "n_classes": 360, "depth": 14, "n_heads": 4, "mlp_ratio": 5, "use_pos_embed": true, "pytorch_attn_imp": false, "init_values": 1e-05, "max_tiles": 15000, "tile_dropout_prob": 0.0}, "pretrained_weights_path": "/hpc/dlab_skin_ai/repositories/tissue_matching/rotation/vit_wee_patch16_reg1_gap_256.sbb_in1k.pth", "num_workers": 4, "pin_memory": false}
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ablation_experiment/no_masking/H&E_AC_CCE/model_instance_3/model_state_dict.tar
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ablation_experiment/no_masking/H&E_AC_CCE/model_instance_4/config.json
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{"experiment_name": "7004_AC_CCE_experiment", "experiments_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/models/rotation", "norm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unmasked_normalized/images", "norm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unmasked_normalized/annotations", "unnorm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unmasked_unnormalized/images", "unnorm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unmasked_unnormalized/annotations", "labels_path": ["/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/image_rotations_HE.json"], "selection_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/assigned_split.json", "mapping_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/patient_mapping.json", "seed": 4, "iterations": 750000, "iterations_per_update": 20, "iterations_per_checkpoint": 5000, "save_all_checkpoints": false, "label_type": "class_prob", "gaussian_stdev": 2.5, "augmentation": {"oversample_small_angles": true, "small_angle_prob": 0.25, "small_angle_range": 30, "brightness": 0.2, "contrast": 0.2, "saturation": 0.2, "hue": 0.05}, "learning_rate": 2e-05, "weight_decay": 0.01, "lr_patience": 5, "lr_factor": 0.5, "loss_function": "CCE", "model_name": "ViT", "apply_masking": false, "model": {"patch_shape": 16, "input_dim": 3, "embed_dim": 256, "n_classes": 360, "depth": 14, "n_heads": 4, "mlp_ratio": 5, "use_pos_embed": true, "pytorch_attn_imp": false, "init_values": 1e-05, "max_tiles": 15000, "tile_dropout_prob": 0.0}, "pretrained_weights_path": "/hpc/dlab_skin_ai/repositories/tissue_matching/rotation/vit_wee_patch16_reg1_gap_256.sbb_in1k.pth", "num_workers": 4, "pin_memory": false}
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ablation_experiment/no_masking/H&E_AC_CCE/model_instance_4/model_state_dict.tar
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ablation_experiment/no_masking/H&E_AC_CCE/model_instance_5/config.json
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{"experiment_name": "7005_AC_CCE_experiment", "experiments_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/models/rotation", "norm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unmasked_normalized/images", "norm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unmasked_normalized/annotations", "unnorm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unmasked_unnormalized/images", "unnorm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unmasked_unnormalized/annotations", "labels_path": ["/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/image_rotations_HE.json"], "selection_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/assigned_split.json", "mapping_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/patient_mapping.json", "seed": 5, "iterations": 750000, "iterations_per_update": 20, "iterations_per_checkpoint": 5000, "save_all_checkpoints": false, "label_type": "class_prob", "gaussian_stdev": 2.5, "augmentation": {"oversample_small_angles": true, "small_angle_prob": 0.25, "small_angle_range": 30, "brightness": 0.2, "contrast": 0.2, "saturation": 0.2, "hue": 0.05}, "learning_rate": 2e-05, "weight_decay": 0.01, "lr_patience": 5, "lr_factor": 0.5, "loss_function": "CCE", "model_name": "ViT", "apply_masking": false, "model": {"patch_shape": 16, "input_dim": 3, "embed_dim": 256, "n_classes": 360, "depth": 14, "n_heads": 4, "mlp_ratio": 5, "use_pos_embed": true, "pytorch_attn_imp": false, "init_values": 1e-05, "max_tiles": 15000, "tile_dropout_prob": 0.0}, "pretrained_weights_path": "/hpc/dlab_skin_ai/repositories/tissue_matching/rotation/vit_wee_patch16_reg1_gap_256.sbb_in1k.pth", "num_workers": 4, "pin_memory": false}
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ablation_experiment/no_masking/H&E_AC_CCE/model_instance_5/model_state_dict.tar
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ablation_experiment/no_pos_enc/H&E_AC_CCE/model_instance_1/config.json
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{"experiment_name": "1001_AC_CCE_experiment", "experiments_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/models/rotation", "norm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/images", "norm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/annotations", "unnorm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/images", "unnorm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/annotations", "labels_path": ["/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/image_rotations_HE.json"], "selection_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/assigned_split.json", "mapping_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/patient_mapping.json", "seed": 1, "iterations": 750000, "iterations_per_update": 20, "iterations_per_checkpoint": 5000, "save_all_checkpoints": false, "label_type": "class_prob", "gaussian_stdev": 2.5, "augmentation": {"oversample_small_angles": true, "small_angle_prob": 0.25, "small_angle_range": 30, "brightness": 0.2, "contrast": 0.2, "saturation": 0.2, "hue": 0.05}, "learning_rate": 2e-05, "weight_decay": 0.01, "lr_patience": 5, "lr_factor": 0.5, "loss_function": "CCE", "model_name": "ViT", "model": {"patch_shape": 16, "input_dim": 3, "embed_dim": 256, "n_classes": 360, "depth": 14, "n_heads": 4, "mlp_ratio": 5, "use_pos_embed": false, "pytorch_attn_imp": false, "init_values": 1e-05, "max_tiles": 15000, "tile_dropout_prob": 0.0}, "pretrained_weights_path": "/hpc/dlab_skin_ai/repositories/tissue_matching/rotation/vit_wee_patch16_reg1_gap_256.sbb_in1k.pth", "num_workers": 4, "pin_memory": false}
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ablation_experiment/no_pos_enc/H&E_AC_CCE/model_instance_1/model_state_dict.tar
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ablation_experiment/no_pos_enc/H&E_AC_CCE/model_instance_2/config.json
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{"experiment_name": "1004_AC_CCE_experiment", "experiments_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/models/rotation", "norm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/images", "norm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/normalized/annotations", "unnorm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/images", "unnorm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unnormalized/annotations", "labels_path": ["/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/image_rotations_HE.json"], "selection_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/assigned_split.json", "mapping_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/patient_mapping.json", "seed": 4, "iterations": 750000, "iterations_per_update": 20, "iterations_per_checkpoint": 5000, "save_all_checkpoints": false, "label_type": "class_prob", "gaussian_stdev": 2.5, "augmentation": {"oversample_small_angles": true, "small_angle_prob": 0.25, "small_angle_range": 30, "brightness": 0.2, "contrast": 0.2, "saturation": 0.2, "hue": 0.05}, "learning_rate": 2e-05, "weight_decay": 0.01, "lr_patience": 5, "lr_factor": 0.5, "loss_function": "CCE", "model_name": "ViT", "model": {"patch_shape": 16, "input_dim": 3, "embed_dim": 256, "n_classes": 360, "depth": 14, "n_heads": 4, "mlp_ratio": 5, "use_pos_embed": false, "pytorch_attn_imp": false, "init_values": 1e-05, "max_tiles": 15000, "tile_dropout_prob": 0.0}, "pretrained_weights_path": "/hpc/dlab_skin_ai/repositories/tissue_matching/rotation/vit_wee_patch16_reg1_gap_256.sbb_in1k.pth", "num_workers": 4, "pin_memory": false}
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{"experiment_name": "7010_AC_CCE_experiment", "experiments_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/models/rotation", "norm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unmasked_normalized/images", "norm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unmasked_normalized/annotations", "unnorm_image_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unmasked_unnormalized/images", "unnorm_segmentation_folder": "/hpc/dlab_skin_ai/projects/tissue_matching/data/unmasked_unnormalized/annotations", "labels_path": ["/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/image_rotations_HE.json"], "selection_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/assigned_split.json", "mapping_path": "/hpc/dlab_skin_ai/projects/tissue_matching/data/sheets/patient_mapping.json", "seed": 5, "iterations": 750000, "iterations_per_update": 20, "iterations_per_checkpoint": 5000, "save_all_checkpoints": false, "label_type": "class_prob", "gaussian_stdev": 2.5, "augmentation": {"oversample_small_angles": true, "small_angle_prob": 0.25, "small_angle_range": 30, "brightness": 0.2, "contrast": 0.2, "saturation": 0.2, "hue": 0.05}, "learning_rate": 2e-05, "weight_decay": 0.01, "lr_patience": 5, "lr_factor": 0.5, "loss_function": "CCE", "model_name": "ViT", "apply_masking": false, "model": {"patch_shape": 16, "input_dim": 3, "embed_dim": 256, "n_classes": 360, "depth": 14, "n_heads": 4, "mlp_ratio": 5, "use_pos_embed": false, "pytorch_attn_imp": false, "init_values": 1e-05, "max_tiles": 15000, "tile_dropout_prob": 0.0}, "pretrained_weights_path": "/hpc/dlab_skin_ai/repositories/tissue_matching/rotation/vit_wee_patch16_reg1_gap_256.sbb_in1k.pth", "num_workers": 4, "pin_memory": false}
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ablation_experiment/no_pos_enc_no_masking/H&E_AC_CCE/7010_AC_CCE_experiment/model_state_dict.tar
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