Add michiyasunaga-BioLinkBERT-base-E2-S1-Mpairwise-FullDataTrue--BasicV2
Browse filesUpload fine-tuned rerankers for BioASQ 14B
Co-authored-by: André Ribeiro <andrepedro2004@hotmail.com>
Co-authored-by: Rúben Garrido <rubengarrido@ua.pt>
- michiyasunaga-BioLinkBERT-base-E2-S1-Mpairwise-FullDataTrue--BasicV2/config.json +36 -0
- michiyasunaga-BioLinkBERT-base-E2-S1-Mpairwise-FullDataTrue--BasicV2/model.safetensors +3 -0
- michiyasunaga-BioLinkBERT-base-E2-S1-Mpairwise-FullDataTrue--BasicV2/ranx_results.json +49 -0
- michiyasunaga-BioLinkBERT-base-E2-S1-Mpairwise-FullDataTrue--BasicV2/tokenizer.json +0 -0
- michiyasunaga-BioLinkBERT-base-E2-S1-Mpairwise-FullDataTrue--BasicV2/tokenizer_config.json +16 -0
- michiyasunaga-BioLinkBERT-base-E2-S1-Mpairwise-FullDataTrue--BasicV2/trainer_state.json +673 -0
- michiyasunaga-BioLinkBERT-base-E2-S1-Mpairwise-FullDataTrue--BasicV2/training_args.bin +3 -0
michiyasunaga-BioLinkBERT-base-E2-S1-Mpairwise-FullDataTrue--BasicV2/config.json
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{
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"add_cross_attention": false,
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"architectures": [
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"BertForSequenceClassification"
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],
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| 6 |
+
"attention_probs_dropout_prob": 0.1,
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| 7 |
+
"bos_token_id": null,
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| 8 |
+
"classifier_dropout": null,
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| 9 |
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"dtype": "bfloat16",
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| 10 |
+
"eos_token_id": null,
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| 11 |
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"gradient_checkpointing": false,
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| 12 |
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"hidden_act": "gelu",
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| 13 |
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"hidden_dropout_prob": 0.1,
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| 14 |
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"hidden_size": 768,
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| 15 |
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"id2label": {
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"0": "LABEL_0"
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},
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"initializer_range": 0.02,
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"intermediate_size": 3072,
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"is_decoder": false,
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"label2id": {
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"LABEL_0": 0
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},
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"layer_norm_eps": 1e-12,
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"max_position_embeddings": 512,
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| 26 |
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"model_type": "bert",
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| 27 |
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"num_attention_heads": 12,
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| 28 |
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"num_hidden_layers": 12,
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| 29 |
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"pad_token_id": 0,
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"position_embedding_type": "absolute",
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"tie_word_embeddings": true,
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| 32 |
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"transformers_version": "5.2.0",
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| 33 |
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"type_vocab_size": 2,
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| 34 |
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"use_cache": false,
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| 35 |
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"vocab_size": 28895
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| 36 |
+
}
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michiyasunaga-BioLinkBERT-base-E2-S1-Mpairwise-FullDataTrue--BasicV2/model.safetensors
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version https://git-lfs.github.com/spec/v1
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oid sha256:1b1c25a8b6d49afe855422e4f9869282476d0a4072fe2825850212856c213589
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size 216490538
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michiyasunaga-BioLinkBERT-base-E2-S1-Mpairwise-FullDataTrue--BasicV2/ranx_results.json
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@@ -0,0 +1,49 @@
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{
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"model": "michiyasunaga-BioLinkBERT-base",
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"val_files": [
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"../../data/val_data/13B3_golden.json",
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"../../data/val_data/13B1_golden.json",
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"../../data/val_data/13B2_golden.json",
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"../../data/val_data/13B4_golden.json"
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],
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"total": {
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"ndcg@5": 0.663855352864405,
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| 11 |
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"mrr": 0.7980180738139214,
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| 12 |
+
"recall@10": 0.39539287113715,
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| 13 |
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"recall@100": 0.9229770570319331,
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| 14 |
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"map@10": 0.33325408788107264,
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| 15 |
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"map-bioasq@10": 0.5338579667978302
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| 16 |
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},
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| 17 |
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"13B3_golden.json": {
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| 18 |
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"ndcg@5": 0.6428975676988439,
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| 19 |
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"mrr": 0.7923430049381605,
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| 20 |
+
"recall@10": 0.3878865970702242,
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| 21 |
+
"recall@100": 0.9380060986901311,
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| 22 |
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"map@10": 0.3220723290944863,
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| 23 |
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"map-bioasq@10": 0.5076967527751841
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| 24 |
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},
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| 25 |
+
"13B1_golden.json": {
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| 26 |
+
"ndcg@5": 0.6336304600230596,
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| 27 |
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"mrr": 0.7506913674560733,
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| 28 |
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"recall@10": 0.45244742786881165,
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| 29 |
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"recall@100": 0.9402919459045872,
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| 30 |
+
"map@10": 0.3858208752079049,
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| 31 |
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"map-bioasq@10": 0.5188041938997822
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| 32 |
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},
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| 33 |
+
"13B2_golden.json": {
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| 34 |
+
"ndcg@5": 0.7612666665851945,
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| 35 |
+
"mrr": 0.8854901960784314,
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| 36 |
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"recall@10": 0.5054636621871458,
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| 37 |
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"recall@100": 0.9321894742820395,
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| 38 |
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"map@10": 0.44477588455249445,
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| 39 |
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"map-bioasq@10": 0.6616366472514932
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| 40 |
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},
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| 41 |
+
"13B4_golden.json": {
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| 42 |
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"ndcg@5": 0.6176267171505222,
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| 43 |
+
"mrr": 0.7635477267830207,
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| 44 |
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"recall@10": 0.23577379742241844,
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| 45 |
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"recall@100": 0.881420709250975,
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| 46 |
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"map@10": 0.18034726266940493,
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| 47 |
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"map-bioasq@10": 0.4472942732648614
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| 48 |
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}
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| 49 |
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}
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michiyasunaga-BioLinkBERT-base-E2-S1-Mpairwise-FullDataTrue--BasicV2/tokenizer.json
ADDED
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The diff for this file is too large to render.
See raw diff
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michiyasunaga-BioLinkBERT-base-E2-S1-Mpairwise-FullDataTrue--BasicV2/tokenizer_config.json
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@@ -0,0 +1,16 @@
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{
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"backend": "tokenizers",
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"cls_token": "[CLS]",
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"do_basic_tokenize": true,
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| 5 |
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"do_lower_case": true,
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| 6 |
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"is_local": false,
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| 7 |
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"mask_token": "[MASK]",
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| 8 |
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"model_max_length": 1000000000000000019884624838656,
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| 9 |
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"never_split": null,
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| 10 |
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"pad_token": "[PAD]",
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| 11 |
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"sep_token": "[SEP]",
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| 12 |
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"strip_accents": null,
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| 13 |
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"tokenize_chinese_chars": true,
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| 14 |
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"tokenizer_class": "BertTokenizer",
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| 15 |
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"unk_token": "[UNK]"
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| 16 |
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}
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michiyasunaga-BioLinkBERT-base-E2-S1-Mpairwise-FullDataTrue--BasicV2/trainer_state.json
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@@ -0,0 +1,673 @@
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|
| 659 |
+
"args": {
|
| 660 |
+
"should_epoch_stop": false,
|
| 661 |
+
"should_evaluate": false,
|
| 662 |
+
"should_log": false,
|
| 663 |
+
"should_save": true,
|
| 664 |
+
"should_training_stop": true
|
| 665 |
+
},
|
| 666 |
+
"attributes": {}
|
| 667 |
+
}
|
| 668 |
+
},
|
| 669 |
+
"total_flos": 0.0,
|
| 670 |
+
"train_batch_size": 16,
|
| 671 |
+
"trial_name": null,
|
| 672 |
+
"trial_params": null
|
| 673 |
+
}
|
michiyasunaga-BioLinkBERT-base-E2-S1-Mpairwise-FullDataTrue--BasicV2/training_args.bin
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:40e4be1180dbb96b83aab69caef1928b3cb848ba39c3fd52fc494150cd65314b
|
| 3 |
+
size 5393
|