Add michiyasunaga-BioLinkBERT-base-E2-S1-Mpairwise-FullDataTrue
Browse filesUpload fine-tuned rerankers for BioASQ 14B
Co-authored-by: André Ribeiro <andrepedro2004@hotmail.com>
Co-authored-by: Rúben Garrido <rubengarrido@ua.pt>
- michiyasunaga-BioLinkBERT-base-E2-S1-Mpairwise-FullDataTrue/config.json +36 -0
- michiyasunaga-BioLinkBERT-base-E2-S1-Mpairwise-FullDataTrue/model.safetensors +3 -0
- michiyasunaga-BioLinkBERT-base-E2-S1-Mpairwise-FullDataTrue/ranx_results.json +49 -0
- michiyasunaga-BioLinkBERT-base-E2-S1-Mpairwise-FullDataTrue/tokenizer.json +0 -0
- michiyasunaga-BioLinkBERT-base-E2-S1-Mpairwise-FullDataTrue/tokenizer_config.json +16 -0
- michiyasunaga-BioLinkBERT-base-E2-S1-Mpairwise-FullDataTrue/trainer_state.json +673 -0
- michiyasunaga-BioLinkBERT-base-E2-S1-Mpairwise-FullDataTrue/training_args.bin +3 -0
michiyasunaga-BioLinkBERT-base-E2-S1-Mpairwise-FullDataTrue/config.json
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{
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"add_cross_attention": false,
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"architectures": [
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"BertForSequenceClassification"
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],
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| 6 |
+
"attention_probs_dropout_prob": 0.1,
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| 7 |
+
"bos_token_id": null,
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| 8 |
+
"classifier_dropout": null,
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| 9 |
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"dtype": "bfloat16",
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| 10 |
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"eos_token_id": null,
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| 11 |
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"gradient_checkpointing": false,
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| 12 |
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"hidden_act": "gelu",
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| 13 |
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"hidden_dropout_prob": 0.1,
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| 14 |
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"hidden_size": 768,
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| 15 |
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"id2label": {
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"0": "LABEL_0"
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},
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| 18 |
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"initializer_range": 0.02,
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| 19 |
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"intermediate_size": 3072,
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"is_decoder": false,
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| 21 |
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"label2id": {
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| 22 |
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"LABEL_0": 0
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},
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| 24 |
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"layer_norm_eps": 1e-12,
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| 25 |
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"max_position_embeddings": 512,
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| 26 |
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"model_type": "bert",
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| 27 |
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"num_attention_heads": 12,
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| 28 |
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"num_hidden_layers": 12,
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| 29 |
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"pad_token_id": 0,
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"position_embedding_type": "absolute",
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| 31 |
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"tie_word_embeddings": true,
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| 32 |
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"transformers_version": "5.2.0",
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| 33 |
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"type_vocab_size": 2,
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| 34 |
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"use_cache": false,
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| 35 |
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"vocab_size": 28895
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| 36 |
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}
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michiyasunaga-BioLinkBERT-base-E2-S1-Mpairwise-FullDataTrue/model.safetensors
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version https://git-lfs.github.com/spec/v1
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oid sha256:958140688375dbe944fdf1d453deeb37a00984412f60faa2857698815629a427
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size 216490538
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michiyasunaga-BioLinkBERT-base-E2-S1-Mpairwise-FullDataTrue/ranx_results.json
ADDED
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@@ -0,0 +1,49 @@
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{
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"model": "michiyasunaga-BioLinkBERT-base",
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"val_files": [
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"../../data/val_data/13B3_golden.json",
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"../../data/val_data/13B1_golden.json",
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"../../data/val_data/13B2_golden.json",
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"../../data/val_data/13B4_golden.json"
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],
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"total": {
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"ndcg@5": 0.7384974971689443,
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| 11 |
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"mrr": 0.8649721789168157,
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| 12 |
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"recall@10": 0.4204076299516288,
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| 13 |
+
"recall@100": 0.9439605312999382,
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| 14 |
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"map@10": 0.3701348754227979,
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| 15 |
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"map-bioasq@10": 0.6177740725919998
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| 16 |
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},
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| 17 |
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"13B3_golden.json": {
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| 18 |
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"ndcg@5": 0.7211996178003487,
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| 19 |
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"mrr": 0.8522664359861591,
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| 20 |
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"recall@10": 0.41905592944033854,
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| 21 |
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"recall@100": 0.9540319210731729,
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| 22 |
+
"map@10": 0.36248905021663314,
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| 23 |
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"map-bioasq@10": 0.5892355016080506
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| 24 |
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},
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| 25 |
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"13B1_golden.json": {
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| 26 |
+
"ndcg@5": 0.693046597671189,
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| 27 |
+
"mrr": 0.8283613445378151,
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| 28 |
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"recall@10": 0.47484952720386514,
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| 29 |
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"recall@100": 0.959815928505439,
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| 30 |
+
"map@10": 0.4111226966289124,
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| 31 |
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"map-bioasq@10": 0.5691604419545596
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| 32 |
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},
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| 33 |
+
"13B2_golden.json": {
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| 34 |
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"ndcg@5": 0.8179597039672204,
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| 35 |
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"mrr": 0.9193363499245852,
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| 36 |
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"recall@10": 0.5179654888905825,
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| 37 |
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"recall@100": 0.9556919200378866,
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| 38 |
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"map@10": 0.47853196414531535,
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| 39 |
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"map-bioasq@10": 0.7337554355075363
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| 40 |
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},
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| 41 |
+
"13B4_golden.json": {
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| 42 |
+
"ndcg@5": 0.7217840692370191,
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| 43 |
+
"mrr": 0.8599245852187027,
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| 44 |
+
"recall@10": 0.26975957427172886,
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| 45 |
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"recall@100": 0.9063023555832547,
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| 46 |
+
"map@10": 0.2283957907003307,
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| 47 |
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"map-bioasq@10": 0.5789449112978524
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| 48 |
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}
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| 49 |
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}
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michiyasunaga-BioLinkBERT-base-E2-S1-Mpairwise-FullDataTrue/tokenizer.json
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The diff for this file is too large to render.
See raw diff
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michiyasunaga-BioLinkBERT-base-E2-S1-Mpairwise-FullDataTrue/tokenizer_config.json
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@@ -0,0 +1,16 @@
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{
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"backend": "tokenizers",
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"cls_token": "[CLS]",
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"do_basic_tokenize": true,
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| 5 |
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"do_lower_case": true,
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| 6 |
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"is_local": false,
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| 7 |
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"mask_token": "[MASK]",
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| 8 |
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"model_max_length": 1000000000000000019884624838656,
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| 9 |
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"never_split": null,
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| 10 |
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"pad_token": "[PAD]",
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| 11 |
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"sep_token": "[SEP]",
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| 12 |
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"strip_accents": null,
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| 13 |
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"tokenize_chinese_chars": true,
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| 14 |
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"tokenizer_class": "BertTokenizer",
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| 15 |
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"unk_token": "[UNK]"
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| 16 |
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}
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michiyasunaga-BioLinkBERT-base-E2-S1-Mpairwise-FullDataTrue/trainer_state.json
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@@ -0,0 +1,673 @@
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"should_log": false,
|
| 663 |
+
"should_save": true,
|
| 664 |
+
"should_training_stop": true
|
| 665 |
+
},
|
| 666 |
+
"attributes": {}
|
| 667 |
+
}
|
| 668 |
+
},
|
| 669 |
+
"total_flos": 0.0,
|
| 670 |
+
"train_batch_size": 16,
|
| 671 |
+
"trial_name": null,
|
| 672 |
+
"trial_params": null
|
| 673 |
+
}
|
michiyasunaga-BioLinkBERT-base-E2-S1-Mpairwise-FullDataTrue/training_args.bin
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:7bc0a5375ddab13208be0e14b9959c9dd2cc241b653825c13dfc55fd82f45cd0
|
| 3 |
+
size 5329
|